BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100324.1| Oryza sativa (japonica cultivar-group) cDNA... 502 e-139
dbj|AK060764.1| Oryza sativa (japonica cultivar-group) cDNA... 492 e-136
gb|CB667082.1|CB667082 OSJNEd14E05.f OSJNEd Oryza sativa (j... 436 e-120
dbj|AK102736.1| Oryza sativa (japonica cultivar-group) cDNA... 416 e-114
gb|AU174059.1|AU174059 AU174059 Rice green shoot Oryza sati... 200 8e-049
dbj|AP005318.1| Oryza sativa (japonica cultivar-group) chro... 196 1e-047
dbj|AP005418.1| Oryza sativa (japonica cultivar-group) chro... 196 1e-047
dbj|AP006849.2| Oryza sativa (japonica cultivar-group) geno... 196 1e-047
dbj|AP005891.3| Oryza sativa (japonica cultivar-group) geno... 196 1e-047
gb|AACV01020175.1| Oryza sativa (japonica cultivar-group) c... 196 1e-047
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 196 1e-047
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 196 1e-047
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 196 1e-047
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 196 1e-047
gb|C98897.1|C98897 C98897 Rice panicle at flowering stage O... 54 1e-004
gb|AU174337.1|AU174337 AU174337 Rice shoot Oryza sativa (ja... 54 1e-004
gb|CB652236.1|CB652236 OSJNEc01O14.f OSJNEc Oryza sativa (j... 54 1e-004
dbj|AK073265.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
ref|XM_473876.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 54 1e-004
emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromoso... 54 1e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AU064484.1|AU064484 AU064484 Rice panicle shorter than 3... 44 0.12
gb|CB649152.1|CB649152 OSJNEb12O24.f OSJNEb Oryza sativa (j... 44 0.12
gb|CB656545.1|CB656545 OSJNEc11A09.f OSJNEc Oryza sativa (j... 44 0.12
gb|CB680857.1|CB680857 OSJNEf06F05.f OSJNEf Oryza sativa (j... 44 0.12
dbj|AK069875.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK106189.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK110652.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
gb|AC137621.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AACV01010859.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01023154.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AC124151.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 44 0.12
gb|AC105262.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AU163501.1|AU163501 AU163501 Rice cDNA from young root O... 42 0.46
dbj|AK102412.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.46
dbj|AP003250.3| Oryza sativa (japonica cultivar-group) geno... 42 0.46
gb|AACV01000148.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
gb|AACV01002985.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
gb|AACV01003045.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.46
ref|NM_190019.1| Oryza sativa (japonica cultivar-group), p... 42 0.46
ref|NM_190020.1| Oryza sativa (japonica cultivar-group), p... 42 0.46
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 42 0.46
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 42 0.46
dbj|AP003272.3| Oryza sativa (japonica cultivar-group) geno... 42 0.46
dbj|AP003735.4| Oryza sativa (japonica cultivar-group) geno... 42 0.46
dbj|AP004330.3| Oryza sativa (japonica cultivar-group) geno... 42 0.46
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.46
gb|AF104864.1| Oryza sativa class I low molecular mass heat... 42 0.46
gb|D46551.1|D46551 RICS11303A Rice green shoot Oryza sativa... 40 1.8
gb|AU067998.1|AU067998 AU067998 Rice callus Oryza sativa (j... 40 1.8
gb|CA755568.1|CA755568 BR030023000_PLATE_H02_16_026.ab1 OA ... 40 1.8
gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, comple... 40 1.8
dbj|AK062166.1| Oryza sativa (japonica cultivar-group) cDNA... 40 1.8
dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA... 40 1.8
dbj|AK068240.1| Oryza sativa (japonica cultivar-group) cDNA... 40 1.8
dbj|AK098913.1| Oryza sativa (japonica cultivar-group) cDNA... 40 1.8
gb|AF161269.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC025905.3| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC139168.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC135209.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC129225.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC129224.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC145775.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AC137596.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 40 1.8
ref|NT_107135.1| Oryza sativa (japonica cultivar-group) 40 1.8
dbj|AP004754.3| Oryza sativa (japonica cultivar-group) geno... 40 1.8
gb|AACV01001126.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
gb|AACV01006290.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
gb|AACV01008167.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
gb|AACV01013257.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
gb|AACV01020521.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
gb|AACV01021711.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
gb|AACV01023674.1| Oryza sativa (japonica cultivar-group) c... 40 1.8
ref|NM_196814.1| Oryza sativa (japonica cultivar-group) put... 40 1.8
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 40 1.8
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 40 1.8
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 40 1.8
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 40 1.8
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 40 1.8
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 40 1.8
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 40 1.8
gb|AQ362363.2|AQ362363 nbxb0049L13r CUGI Rice BAC Library O... 38 7.2
gb|C72550.1|C72550 C72550 Rice panicle at flowering stage O... 38 7.2
gb|CA756471.1|CA756471 BR030043000_PLATE_C02_11_008.ab1 OA ... 38 7.2
gb|CB655597.1|CB655597 OSJNEc09C21.f OSJNEc Oryza sativa (j... 38 7.2
gb|AC105261.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
dbj|AK058655.1| Oryza sativa (japonica cultivar-group) cDNA... 38 7.2
dbj|AK061224.1| Oryza sativa (japonica cultivar-group) cDNA... 38 7.2
dbj|AK069762.1| Oryza sativa (japonica cultivar-group) cDNA... 38 7.2
dbj|AK071011.1| Oryza sativa (japonica cultivar-group) cDNA... 38 7.2
dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA... 38 7.2
emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC O... 38 7.2
dbj|AP005870.3| Oryza sativa (japonica cultivar-group) geno... 38 7.2
gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 ... 38 7.2
gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbar... 38 7.2
gb|AC144453.2| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
dbj|AP005321.2| Oryza sativa (japonica cultivar-group) geno... 38 7.2
dbj|AP005421.3| Oryza sativa (japonica cultivar-group) geno... 38 7.2
gb|AC104275.2| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
dbj|AP004572.5| Oryza sativa (japonica cultivar-group) geno... 38 7.2
dbj|AP005516.5| Oryza sativa (japonica cultivar-group) geno... 38 7.2
gb|AC137610.2| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107208.1| Oryza sativa (japonica cultivar-group) 38 7.2
dbj|AP005322.2| Oryza sativa (japonica cultivar-group) geno... 38 7.2
dbj|AP005903.3| Oryza sativa (japonica cultivar-group) geno... 38 7.2
gb|AACV01000262.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01004332.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01006822.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01007841.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01007912.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01011203.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01011895.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01015484.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01017591.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01019918.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01025440.1| Oryza sativa (japonica cultivar-group) c... 38 7.2
gb|AACV01025882.1| Oryza sativa (japonica cultivar-group) C... 38 7.2
gb|AACV01026085.1| Oryza sativa (japonica cultivar-group) C... 38 7.2
gb|AACV01032326.1| Oryza sativa (japonica cultivar-group) C... 38 7.2
gb|AC136221.2| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
dbj|AP003339.4| Oryza sativa (japonica cultivar-group) geno... 38 7.2
ref|NM_184553.1| Oryza sativa (japonica cultivar-group), p... 38 7.2
ref|NM_184607.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
ref|NM_187487.1| Oryza sativa (japonica cultivar-group), p... 38 7.2
ref|NM_195123.1| Oryza sativa (japonica cultivar-group) hyp... 38 7.2
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 38 7.2
ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107226.1| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 38 7.2
ref|XM_550270.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 38 7.2
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 38 7.2
gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 ... 38 7.2
dbj|AP003282.2| Oryza sativa (japonica cultivar-group) geno... 38 7.2
gb|CH401407.1| Oryza sativa (japonica cultivar-group) scaff... 38 7.2
gb|CH401352.1| Oryza sativa (japonica cultivar-group) scaff... 38 7.2
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 38 7.2
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 38 7.2
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 38 7.2
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 38 7.2
gb|AC084295.10| Oryza sativa (japonica cultivar-group) chro... 38 7.2
gb|AC135956.6| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 38 7.2
>dbj|AK100324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079I03, full
insert sequence
Length = 2626
Score = 502 bits (253), Expect = e-139
Identities = 520/609 (85%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 298 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 357
Query: 259 catcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttga 318
|||||||||||||||||| |||||| ||||| || |||| |||||||||| || |||||
Sbjct: 358 catcgggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttga 417
Query: 319 tttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatt 378
|||||| || |||||||||||||||| ||| ||||||||||||| ||||||| || ||
Sbjct: 418 tttctctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtt 477
Query: 379 tcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcaga 438
||| |||||||||| | ||||| | | || ||| |||| ||||||||| ||||||||
Sbjct: 478 tcatggagatcttaaagttccaagtgctatgtttattaaacgtgatgttactaatgcagg 537
Query: 439 taatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgcat 498
| ||||| ||||| |||| || ||||| | ||||| |||||||||||| |||||
Sbjct: 538 tgatctttctgctgcctttggaaaacatgtggacacatatggtggactagatatttgcat 597
Query: 499 caactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaactag 558
||| |||||||||||||| | || ||||||||||||||||||| |||||||||||||||
Sbjct: 598 caattgtgctggaattgccatcaagacactagtttatgatgatagatctgatggaactag 657
Query: 559 aacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattgc 618
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 658 cacatggaggcatgctgtaaatgtgaaccttgttgctgttattgatggtactcgcattgc 717
Query: 619 aagtcaaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcggc 678
||||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 718 aagtcaaattatgcgatctgggaagaagcctggtgtcataataaatattggttcagccgc 777
Query: 679 aggtctttatcctatgttcctcgatcccgtatatagtgcggcaaaagggggtgtggttat 738
||| |||||||||||| | | |||||| ||||||||| |||||| || || |||||
Sbjct: 778 aggcctttatcctatgaactttgatcccatatatagtggaacaaaagctggcgttgttat 837
Query: 739 gtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctctgccc 798
|||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 838 gtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactctgccc 897
Query: 799 agagtttgt 807
||||||||
Sbjct: 898 tgagtttgt 906
>dbj|AK060764.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A07, full
insert sequence
Length = 2305
Score = 492 bits (248), Expect = e-136
Identities = 512/600 (85%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 129 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 188
Query: 259 catcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttga 318
|||||||||||||||||| |||||| |||| || |||| |||||||||| || |||||
Sbjct: 189 catcgggaaagcactttgcattgctcttgcgcagaagggtctatttgtgacagttgttga 248
Query: 319 tttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatt 378
|||||| || |||||||||||||||| ||| ||||||||||||| ||||||| || ||
Sbjct: 249 tttctctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtt 308
Query: 379 tcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcaga 438
||| |||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 309 tcatggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcagg 368
Query: 439 taatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgcat 498
| ||||| ||||| |||| || ||||| | ||||| |||||||||||| |||||
Sbjct: 369 tgatctttctgctgcctttggaaaacatgtggacacatatggtggactagatatttgcat 428
Query: 499 caactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaactag 558
||| |||||||||||||| | || ||||||||||||||||||| |||||||||||||||
Sbjct: 429 caattgtgctggaattgccatcaagacactagtttatgatgatagatctgatggaactag 488
Query: 559 aacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattgc 618
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 cacatggaggcatgctgtaaatgtgaaccttgttgctgttattgatggtactcgcattgc 548
Query: 619 aagtcaaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcggc 678
||||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 549 aagtcaaattatgcgatctgggaagaagcctggtgtcataataaatattggttcagccgc 608
Query: 679 aggtctttatcctatgttcctcgatcccgtatatagtgcggcaaaagggggtgtggttat 738
||| |||||||||||| | | |||||| ||||||||| |||||| || || |||||
Sbjct: 609 aggcctttatcctatgaactttgatcccatatatagtggaacaaaagctggcgttgttat 668
Query: 739 gtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctctgccc 798
|||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 669 gtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactctgccc 728
>gb|CB667082.1|CB667082 OSJNEd14E05.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14E05 5', mRNA sequence
Length = 824
Score = 436 bits (220), Expect = e-120
Identities = 463/544 (85%)
Strand = Plus / Plus
Query: 264 ggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttct 323
||||||||||||| |||||| ||||| || |||| |||||||||| || ||||||||||
Sbjct: 1 ggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttct 60
Query: 324 cagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcacg 383
| || |||||||||||||||| ||| ||||||||||||| ||||||| || ||||| |
Sbjct: 61 ctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcatg 120
Query: 384 gagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcagataatc 443
||||||||| | ||||| | | || ||| |||| |||||||||| |||||||| | |||
Sbjct: 121 gagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcaggtgatc 180
Query: 444 ttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgcatcaact 503
|| ||||| |||| || ||||| | ||||| |||||||||||| |||||||| |
Sbjct: 181 tttctgctgcctttggaaaacatgtggacacatatggtggactagatatttgcatcaatt 240
Query: 504 gtgctggaattgctaataaaacactagtttatgatgatacatctgatggaactagaacat 563
||||||||||||| | || ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 241 gtgctggaattgccatcaagacactagtttatgatgatagatctgatggaactagcacat 300
Query: 564 ggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattgcaagtc 623
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 301 ggaggcatgctgtaaatgtgaaccttgttgctgttattgatggtactcgcattgcaagtc 360
Query: 624 aaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcggcaggtc 683
|||| |||||| |||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct: 361 aaattatgcgatctgggaagaagcctggtgtcataataaatattggttcagccgcaggcc 420
Query: 684 tttatcctatgttcctcgatcccgtatatagtgcggcaaaagggggtgtggttatgttta 743
||||||||||| | | |||||| ||||||||| |||||| || || ||||||||||
Sbjct: 421 tttatcctatgaactttgatcccatatatagtggaacaaaagctggcgttgttatgttta 480
Query: 744 caagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctctgcccagagt 803
||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| ||||
Sbjct: 481 caagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactctgccctgagt 540
Query: 804 ttgt 807
||||
Sbjct: 541 ttgt 544
>dbj|AK102736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C13, full
insert sequence
Length = 3347
Score = 416 bits (210), Expect = e-114
Identities = 441/518 (85%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| | |||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 124 cgccgccgggatggagctgaggcccgggatgtcggccctcgtcacgggcggcggctccgg 183
Query: 259 catcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttga 318
|||||||||||||||||| |||||| ||||| || |||| |||||||||| || |||||
Sbjct: 184 catcgggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttga 243
Query: 319 tttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatt 378
|||||| || |||||||||||||||| ||| ||||||||||||| ||||||| || ||
Sbjct: 244 tttctctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtt 303
Query: 379 tcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcaga 438
||| |||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 304 tcatggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcagg 363
Query: 439 taatcttgctgcttgttttgagaagcatgtacagacatacaatggactagatatctgcat 498
| ||||| ||||| |||| || ||||| | ||||| |||||||||||| |||||
Sbjct: 364 tgatctttctgctgcctttggaaaacatgtggacacatatggtggactagatatttgcat 423
Query: 499 caactgtgctggaattgctaataaaacactagtttatgatgatacatctgatggaactag 558
||| |||||||||||||| | || ||||||||||||||||||| |||||||||||||||
Sbjct: 424 caattgtgctggaattgccatcaagacactagtttatgatgatagatctgatggaactag 483
Query: 559 aacatggaggcatgctgttaatgtgaaccttgttgctgtcattgatggtactcgcattgc 618
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 484 cacatggaggcatgctgtaaatgtgaaccttgttgctgttattgatggtactcgcattgc 543
Query: 619 aagtcaaataatgcgaaaccaaaagaagcccggtgtcataataaacattggttcagcggc 678
||||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 544 aagtcaaattatgcgatctgggaagaagcctggtgtcataataaatattggttcagccgc 603
Query: 679 aggtctttatcctatgttcctcgatcccgtatatagtg 716
||| |||||||||||| | | |||||| |||||||||
Sbjct: 604 aggcctttatcctatgaactttgatcccatatatagtg 641
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 949 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 1008
Query: 794 tgccc 798
|||||
Sbjct: 1009 tgccc 1013
>gb|AU174059.1|AU174059 AU174059 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14990, mRNA sequence
Length = 467
Score = 200 bits (101), Expect = 8e-049
Identities = 215/253 (84%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 162 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 221
Query: 259 catcgggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttga 318
|||||||||||||||||| |||||| ||||| || |||| |||||||||| || |||||
Sbjct: 222 catcgggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttga 281
Query: 319 tttctcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatt 378
|||||| || |||||||||||||||| ||| ||||||||||||| ||||||| || ||
Sbjct: 282 tttctctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtt 341
Query: 379 tcacggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcaga 438
||| |||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 342 tcatggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcagg 401
Query: 439 taatcttgctgct 451
| ||||| |||||
Sbjct: 402 tgatctttctgct 414
>dbj|AP005318.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0614G07, ***
SEQUENCING IN PROGRESS ***
Length = 114567
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Minus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 70740 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 70681
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 70680 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 70621
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 70620 tgatggtactcgcattgca 70602
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Minus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 71803 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 71744
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 71743 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 71684
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 71683 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 71629
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 69762 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 69703
Query: 794 tgccc 798
|||||
Sbjct: 69702 tgccc 69698
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 70145 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 70086
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 70085 gatcccatatatagtg 70070
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 72824 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 72765
Query: 259 catcgg 264
||||||
Sbjct: 72764 catcgg 72759
>dbj|AP005418.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0011A05,
*** SEQUENCING IN PROGRESS ***
Length = 82771
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Minus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 1703 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 1644
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1643 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 1584
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 1583 tgatggtactcgcattgca 1565
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Minus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 2766 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 2707
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 2706 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 2647
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 2646 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 2592
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 725 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 666
Query: 794 tgccc 798
|||||
Sbjct: 665 tgccc 661
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 1108 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 1049
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 1048 gatcccatatatagtg 1033
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 3787 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 3728
Query: 259 catcgg 264
||||||
Sbjct: 3727 catcgg 3722
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0054F02
Length = 180651
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 48651 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 48710
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 48711 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 48770
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 48771 tgatggtactcgcattgca 48789
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 47588 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 47647
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 47648 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 47707
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 47708 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 47762
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 49629 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 49688
Query: 794 tgccc 798
|||||
Sbjct: 49689 tgccc 49693
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 49246 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 49305
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 49306 gatcccatatatagtg 49321
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 46567 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 46626
Query: 259 catcgg 264
||||||
Sbjct: 46627 catcgg 46632
>dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1045B05
Length = 140992
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 111610 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 111669
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 111670 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 111729
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 111730 tgatggtactcgcattgca 111748
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 110547 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 110606
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 110607 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 110666
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 110667 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 110721
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 112588 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 112647
Query: 794 tgccc 798
|||||
Sbjct: 112648 tgccc 112652
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 112205 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 112264
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 112265 gatcccatatatagtg 112280
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 109526 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 109585
Query: 259 catcgg 264
||||||
Sbjct: 109586 catcgg 109591
>gb|AACV01020175.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020175, whole
genome shotgun sequence
Length = 30101
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 5178 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 5237
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 5238 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 5297
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 5298 tgatggtactcgcattgca 5316
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 4115 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 4174
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 4175 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 4234
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 4235 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 4289
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 6156 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 6215
Query: 794 tgccc 798
|||||
Sbjct: 6216 tgccc 6220
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 5773 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 5832
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 5833 gatcccatatatagtg 5848
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 3094 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 3153
Query: 259 catcgg 264
||||||
Sbjct: 3154 catcgg 3159
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 3016541 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 3016600
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 3016601 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 3016660
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 3016661 tgatggtactcgcattgca 3016679
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 3015478 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 3015537
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 3015538 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 3015597
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 3015598 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 3015652
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 3017519 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 3017578
Query: 794 tgccc 798
|||||
Sbjct: 3017579 tgccc 3017583
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 3017136 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 3017195
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 3017196 gatcccatatatagtg 3017211
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 3014457 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 3014516
Query: 259 catcgg 264
||||||
Sbjct: 3014517 catcgg 3014522
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 6650199 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 6650258
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 6650259 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 6650318
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 6650319 tgatggtactcgcattgca 6650337
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 6649136 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 6649195
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 6649196 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 6649255
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 6649256 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 6649310
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 6651177 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 6651236
Query: 794 tgccc 798
|||||
Sbjct: 6651237 tgccc 6651241
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 6650794 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 6650853
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 6650854 gatcccatatatagtg 6650869
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 6648115 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 6648174
Query: 259 catcgg 264
||||||
Sbjct: 6648175 catcgg 6648180
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 11077293 ctccgaggcctcgtctccttcccc 11077316
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 3310782 tcgtcaccggcggcgcctc 3310764
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 16124010 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 16124069
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 16124070 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 16124129
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 16124130 tgatggtactcgcattgca 16124148
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 16122947 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 16123006
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 16123007 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 16123066
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 16123067 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 16123121
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 16124988 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 16125047
Query: 794 tgccc 798
|||||
Sbjct: 16125048 tgccc 16125052
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 16124605 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 16124664
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 16124665 gatcccatatatagtg 16124680
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 16121926 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 16121985
Query: 259 catcgg 264
||||||
Sbjct: 16121986 catcgg 16121991
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 20551104 ctccgaggcctcgtctccttcccc 20551127
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 12784593 tcgtcaccggcggcgcctc 12784575
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 196 bits (99), Expect = 1e-047
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 481 tggactagatatctgcatcaactgtgctggaattgctaataaaacactagtttatgatga 540
|||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||
Sbjct: 17324738 tggactagatatttgcatcaattgtgctggaattgccatcaagacactagtttatgatga 17324797
Query: 541 tacatctgatggaactagaacatggaggcatgctgttaatgtgaaccttgttgctgtcat 600
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 17324798 tagatctgatggaactagcacatggaggcatgctgtaaatgtgaaccttgttgctgttat 17324857
Query: 601 tgatggtactcgcattgca 619
|||||||||||||||||||
Sbjct: 17324858 tgatggtactcgcattgca 17324876
Score = 125 bits (63), Expect = 4e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 263 gggaaagcactttgtattgcttttgcaaggaggggtttatttgtgactgtcgttgatttc 322
|||||||||||||| |||||| ||||| || |||| |||||||||| || |||||||||
Sbjct: 17323675 gggaaagcactttgcattgctcttgcacagaagggtctatttgtgacagttgttgatttc 17323734
Query: 323 tcagaggaaaatggaagagaagttgctacattagttcaaaaagaaaatagcaaatttcac 382
|| || |||||||||||||||| ||| ||||||||||||| ||||||| || |||||
Sbjct: 17323735 tctgaagaaaatggaagagaagccgcttcattagttcaaaatgaaaataaaaagtttcat 17323794
Query: 383 ggagatcttagaattccatcttcaatatttgttaagtgtgatgttagtaatgcag 437
|||||||||| | ||||| | | || ||| |||| |||||||||| ||||||||
Sbjct: 17323795 ggagatcttaaagttccaagtgctatgtttattaaatgtgatgttactaatgcag 17323849
Score = 97.6 bits (49), Expect = 9e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 734 gttatgtttacaagatcactttctccattgaaacgccatggtgttcgtgtcaatgtgctc 793
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct: 17325716 gttatgtttacaagatcacttgctccattgaaacgccatggtatacgtgtcaatgtactc 17325775
Query: 794 tgccc 798
|||||
Sbjct: 17325776 tgccc 17325780
Score = 79.8 bits (40), Expect = 2e-012
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 641 aagaagcccggtgtcataataaacattggttcagcggcaggtctttatcctatgttcctc 700
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | |
Sbjct: 17325333 aagaagcctggtgtcataataaatattggttcagccgcaggcctttatcctatgaacttt 17325392
Query: 701 gatcccgtatatagtg 716
|||||| |||||||||
Sbjct: 17325393 gatcccatatatagtg 17325408
Score = 75.8 bits (38), Expect = 3e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctcaagcccggcatgtcggcgctcgtcaccggcggcgcctccgg 258
||||| || ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 17322654 cgccgccgggatggagctgaagcccgggatgtcggccctcgtcacgggcggcggctccgg 17322713
Query: 259 catcgg 264
||||||
Sbjct: 17322714 catcgg 17322719
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 21629729 ctccgaggcctcgtctccttcccc 21629752
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 13919516 tcgtcaccggcggcgcctc 13919498
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 4860654 ccgtggcatcgtctccttcccca 4860632
>gb|C98897.1|C98897 C98897 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3234_1A, mRNA sequence
Length = 386
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 269 cggcgctggtcaccggcggcggctccggcatcggg 303
>gb|AU174337.1|AU174337 AU174337 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4821, mRNA sequence
Length = 313
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 247 cggcgctggtcaccggcggcggctccggcatcggg 281
>gb|CB652236.1|CB652236 OSJNEc01O14.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc01O14 5', mRNA sequence
Length = 554
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 271 cggcgctggtcaccggcggcggctccggcatcggg 305
>dbj|AK073265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025B16, full
insert sequence
Length = 1364
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 290 cggcgctggtcaccggcggcggctccggcatcggg 324
>ref|XM_473876.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 900
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 47 cggcgctggtcaccggcggcggctccggcatcggg 81
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 1069929 cggcgctggtcaccggcggcggctccggcatcggg 1069963
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
complete sequence
Length = 160484
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 155398 cggcgctggtcaccggcggcggctccggcatcggg 155432
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
||||||| ||||||||||||| |||||||||||||
Sbjct: 31173317 cggcgctggtcaccggcggcggctccggcatcggg 31173351
>gb|AU064484.1|AU064484 AU064484 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31523_1A, mRNA sequence
Length = 394
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 240 gctcgtcaccggcgcctcctccggcatcgg 269
>gb|CB649152.1|CB649152 OSJNEb12O24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12O24 5', mRNA sequence
Length = 718
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 253 gctcgtcaccggcgcctcctccggcatcgg 282
>gb|CB656545.1|CB656545 OSJNEc11A09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11A09 5', mRNA sequence
Length = 794
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 255 gctcgtcaccggcgcctcctccggcatcgg 284
>gb|CB680857.1|CB680857 OSJNEf06F05.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06F05 5', mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 240 gctcgtcaccggcgcctcctccggcatcgg 269
>dbj|AK069875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036D07, full
insert sequence
Length = 1472
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 403 gctcgtcaccggcgcctcctccggcatcgg 432
>dbj|AK106189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D12, full
insert sequence
Length = 1396
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 172 gctcgtcaccggcgcctcctccggcatcgg 201
>dbj|AK110652.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-E03, full
insert sequence
Length = 1376
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 354 ggcgatcgtgaccggcggcgactccggcatcggg 387
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111O13,
complete sequence
Length = 126332
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 118446 ggcgatcgtgaccggcggcgactccggcatcggg 118413
>gb|AACV01010859.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010859, whole
genome shotgun sequence
Length = 36641
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 14968 ggcgatcgtgaccggcggcgactccggcatcggg 15001
>gb|AACV01023154.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023154, whole
genome shotgun sequence
Length = 11252
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 2713 gctcgtcaccggcgcctcctccggcatcgg 2742
>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0019E05, complete sequence
Length = 129021
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 60611 gctcgtcaccggcgcctcctccggcatcgg 60640
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 1376402 ggcgatcgtgaccggcggcgactccggcatcggg 1376369
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03,
complete sequence
Length = 107870
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 13930 ggcgatcgtgaccggcggcgactccggcatcggg 13897
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 6095272 gctcgtcaccggcgcctcctccggcatcgg 6095301
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 2333100 ggcgatcgtgaccggcggcgactccggcatcggg 2333067
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gcctcgtctccttccccac 82
|||||||||||||||||||
Sbjct: 7532127 gcctcgtctccttccccac 7532145
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 13950316 gctcgtcaccggcgcctcctccggcatcgg 13950345
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 20750606 tccatcttcaatatttgtta 20750625
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 20750497 tccatcttcaatatttgtta 20750516
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 2333100 ggcgatcgtgaccggcggcgactccggcatcggg 2333067
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 16075793 gcctcctcccgcttcgcatctcg 16075771
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gcctcgtctccttccccac 82
|||||||||||||||||||
Sbjct: 7532127 gcctcgtctccttccccac 7532145
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 232 ggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| |||| |||||||||| |||||||||||||
Sbjct: 2286015 ggcgatcgtgaccggcggcgactccggcatcggg 2285982
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 16415677 gcctcctcccgcttcgcatctcg 16415655
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 12115442 ccgtggcatcgtctccttcccca 12115464
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 12104813 ccgtggcatcgtctccttcccca 12104835
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 11191029 ccgtggcatcgtctccttcccca 11191051
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 11183550 ccgtggcatcgtctccttcccca 11183572
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gcctcgtctccttccccac 82
|||||||||||||||||||
Sbjct: 7610041 gcctcgtctccttccccac 7610059
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 17186009 gctcgtcaccggcgcctcctccggcatcgg 17186038
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 25301987 cggcgctcgtcaccggcggc 25301968
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 25190822 cggcgctcgtcaccggcggc 25190803
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 23342214 tccatcttcaatatttgtta 23342233
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 23342105 tccatcttcaatatttgtta 23342124
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||| | |||||||||||||
Sbjct: 17281195 gctcgtcaccggcgcctcctccggcatcgg 17281224
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 25620657 cggcgctcgtcaccggcggc 25620638
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 25509480 cggcgctcgtcaccggcggc 25509461
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 23652124 tccatcttcaatatttgtta 23652143
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 23652015 tccatcttcaatatttgtta 23652034
>gb|AU163501.1|AU163501 AU163501 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10921, mRNA sequence
Length = 303
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 61 ccggcaagacggcgctcgtcaccggcggc 89
>dbj|AK102412.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093A04,
full insert sequence
Length = 1558
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 5 cctcgtctccttccccacttc 25
>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0443D08
Length = 146670
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 13193 attacagccttacaggagagt 13213
>gb|AACV01000148.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000148, whole
genome shotgun sequence
Length = 42841
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 17865 attacagccttacaggagagt 17845
>gb|AACV01002985.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002985, whole
genome shotgun sequence
Length = 37068
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 21992 ccggcaagacggcgctcgtcaccggcggc 21964
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 19203 ccggcaagacggcgctcgtcaccggcggc 19175
>gb|AACV01003045.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003045, whole
genome shotgun sequence
Length = 13907
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 12735 cctcgtctccttccccacttc 12715
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 41861557 cctcgtctccttccccacttc 41861537
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 40925092 ccggcaagacggcgctcgtcaccggcggc 40925120
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 40922304 ccggcaagacggcgctcgtcaccggcggc 40922332
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 1948417 attacagccttacaggagagt 1948437
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 3596248 tccacccacccctgcgccg 3596230
>ref|NM_190019.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 846
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 50 ccggcaagacggcgctcgtcaccggcggc 78
>ref|NM_190020.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 834
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 38 ccggcaagacggcgctcgtcaccggcggc 66
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 1489851 cctcgtctccttccccacttc 1489831
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 553386 ccggcaagacggcgctcgtcaccggcggc 553414
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 550598 ccggcaagacggcgctcgtcaccggcggc 550626
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 1948417 attacagccttacaggagagt 1948437
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 3596248 tccacccacccctgcgccg 3596230
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506E04
Length = 139934
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 56528 ccggcaagacggcgctcgtcaccggcggc 56556
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 53740 ccggcaagacggcgctcgtcaccggcggc 53768
>dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1147A04
Length = 150053
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 24263 cctcgtctccttccccacttc 24243
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0052O12
Length = 167881
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 147068 ccggcaagacggcgctcgtcaccggcggc 147096
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 144280 ccggcaagacggcgctcgtcaccggcggc 144308
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 15984462 cctcgtctccttccccacttc 15984442
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 15122980 ccggcaagacggcgctcgtcaccggcggc 15123008
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 15120191 ccggcaagacggcgctcgtcaccggcggc 15120219
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 2000035 attacagccttacaggagagt 2000055
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 3662446 tccacccacccctgcgccg 3662428
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 41186183 cctcgtctccttccccacttc 41186163
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 40324701 ccggcaagacggcgctcgtcaccggcggc 40324729
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 40321912 ccggcaagacggcgctcgtcaccggcggc 40321940
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 2000035 attacagccttacaggagagt 2000055
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 15329872 cggcgctcgtcaccggcggc 15329891
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 3662446 tccacccacccctgcgccg 3662428
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 cctcgtctccttccccacttc 85
|||||||||||||||||||||
Sbjct: 41780887 cctcgtctccttccccacttc 41780867
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 40844422 ccggcaagacggcgctcgtcaccggcggc 40844450
Score = 42.1 bits (21), Expect = 0.46
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 222 ccggcatgtcggcgctcgtcaccggcggc 250
|||||| | ||||||||||||||||||||
Sbjct: 40841634 ccggcaagacggcgctcgtcaccggcggc 40841662
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 1950615 attacagccttacaggagagt 1950635
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 3598446 tccacccacccctgcgccg 3598428
>gb|AF104864.1| Oryza sativa class I low molecular mass heat shock protein (hsp4.5-1)
and class I low molecular mass heat shock protein
(hsp4.5-2) pseudogenes, complete sequence
Length = 1618
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 1232 attacagccttacaggagagt 1212
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 822 attacagccttacaggagagt 842
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 457 attacagccttacaggagagt 477
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 attacagccttacaggagagt 37
|||||||||||||||||||||
Sbjct: 387 attacagccttacaggagagt 407
>gb|D46551.1|D46551 RICS11303A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 357
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 143 cggcgctcgtcaccggcggc 162
>gb|AU067998.1|AU067998 AU067998 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11458_7A, mRNA sequence
Length = 368
Score = 40.1 bits (20), Expect = 1.8
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||||| ||||||||| ||| |||||||||||||
Sbjct: 312 cggcgcnggtcaccggccgcggctccggcatcggg 346
>gb|CA755568.1|CA755568 BR030023000_PLATE_H02_16_026.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030023000_PLATE_H02_16_026.ab1 similar to NP_565259.1|
(NM_126196) NADC homolog [Arabidopsis thaliana], mRNA
sequence
Length = 640
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 81 ctccgaggcctcgtctccttcccc 104
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence
Length = 77605
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 37555 tccatcttcaatatttgtta 37536
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 37446 tccatcttcaatatttgtta 37427
>dbj|AK062166.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B08, full
insert sequence
Length = 1007
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 149 cggcgctcgtcaccggcggc 168
>dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118E15, full
insert sequence
Length = 1184
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 819 gcgctcgtcaccggcggctcccgcggcatcgg 788
>dbj|AK068240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149L15, full
insert sequence
Length = 1606
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 102 ctccgaggcctcgtctccttcccc 125
>dbj|AK098913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I11, full
insert sequence
Length = 937
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 82 cggcgctcgtcaccggcggc 101
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0034K24, complete sequence
Length = 142852
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 44870 tccatcttcaatatttgtta 44851
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 44761 tccatcttcaatatttgtta 44742
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
complete sequence
Length = 179157
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 28701 gcgctcgtcaccggcggctcccgcggcatcgg 28732
>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
complete sequence
Length = 126027
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 110925 cggcgctcgtcaccggcggc 110906
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 115155 cggccctcgtcaccggcggcacccgcggcatcggg 115121
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0071M09, complete sequence
Length = 143595
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 44898 cggcgctcgtcaccggcggc 44879
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 49128 cggccctcgtcaccggcggcacccgcggcatcggg 49094
>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0051D10, complete sequence
Length = 140272
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 43755 cggcgctcgtcaccggcggc 43774
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0029P13, complete sequence
Length = 158506
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 29000 cggcgctcgtcaccggcggc 28981
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
P0313E01, complete sequence
Length = 149215
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 66092 cggcgctcgtcaccggcggc 66073
>gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0031H05, complete sequence
Length = 141200
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 86355 ctccgaggcctcgtctccttcccc 86378
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 1999964 tccatcttcaatatttgtta 1999983
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 1999855 tccatcttcaatatttgtta 1999874
>ref|NT_107135.1| Oryza sativa (japonica cultivar-group)
Length = 983661
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 177269 cggcgctcgtcaccggcggc 177250
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 66092 cggcgctcgtcaccggcggc 66073
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0529B09
Length = 138188
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ataatcttgctgcttgtttt 457
||||||||||||||||||||
Sbjct: 38343 ataatcttgctgcttgtttt 38362
>gb|AACV01001126.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001126, whole
genome shotgun sequence
Length = 55492
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 22903 cggcgctcgtcaccggcggc 22922
>gb|AACV01006290.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006290, whole
genome shotgun sequence
Length = 23368
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 18929 cggcgctcgtcaccggcggc 18910
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 23157 cggccctcgtcaccggcggcacccgcggcatcggg 23123
>gb|AACV01008167.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008167, whole
genome shotgun sequence
Length = 14852
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 11604 cggcgctcgtcaccggcggc 11623
>gb|AACV01013257.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013257, whole
genome shotgun sequence
Length = 16516
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ataatcttgctgcttgtttt 457
||||||||||||||||||||
Sbjct: 4707 ataatcttgctgcttgtttt 4726
>gb|AACV01020521.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020521, whole
genome shotgun sequence
Length = 70466
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ctccgtggcctcgtctccttcccc 80
||||| ||||||||||||||||||
Sbjct: 27848 ctccgaggcctcgtctccttcccc 27871
>gb|AACV01021711.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021711, whole
genome shotgun sequence
Length = 23179
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 6087 gcgctcgtcaccggcggctcccgcggcatcgg 6056
>gb|AACV01023674.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023674, whole
genome shotgun sequence
Length = 5227
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 3871 tccatcttcaatatttgtta 3852
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 3762 tccatcttcaatatttgtta 3743
>ref|NM_196814.1| Oryza sativa (japonica cultivar-group) putative short-chain alcohol
dehydrogenase (OSJNBa0018F16.12), mRNA
Length = 786
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 46 gcgctcgtcaccggcggctcccgcggcatcgg 77
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 2881443 gcgctcgtcaccggcggctcccgcggcatcgg 2881474
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ataatcttgctgcttgtttt 457
||||||||||||||||||||
Sbjct: 1098989 ataatcttgctgcttgtttt 1099008
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 263688 cggcgctcgtcaccggcggc 263669
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 267918 cggccctcgtcaccggcggcacccgcggcatcggg 267884
>gb|CH401265.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000102 genomic
scaffold, whole genome shotgun sequence
Length = 1659275
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 1479116 tccatcttcaatatttgtta 1479135
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tccatcttcaatatttgtta 416
||||||||||||||||||||
Sbjct: 1479007 tccatcttcaatatttgtta 1479026
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 4083389 gcgctcgtcaccggcggctcccgcggcatcgg 4083420
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ataatcttgctgcttgtttt 457
||||||||||||||||||||
Sbjct: 5296787 ataatcttgctgcttgtttt 5296806
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 7659006 cggcgctcgtcaccggcggc 7659025
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 4160295 gtcaccggcggcgccggcggcatcggg 4160321
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 3123979 cgccggcgagatggagctc 3123961
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 8879377 cggcgctcgtcaccggcggc 8879358
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 8883605 cggccctcgtcaccggcggcacccgcggcatcggg 8883571
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 3713377 cggcgctcgtcaccggcggc 3713396
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 14949183 gcgctcgtcaccggcggctcccgcggcatcgg 14949214
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ataatcttgctgcttgtttt 457
||||||||||||||||||||
Sbjct: 5296787 ataatcttgctgcttgtttt 5296806
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 34925169 cggcgctcgtcaccggcggc 34925188
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 9071739 cggcgctcgtcaccggcggc 9071720
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 31426458 gtcaccggcggcgccggcggcatcggg 31426484
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 30390142 cgccggcgagatggagctc 30390124
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 16569633 gcctcctcccgcttcgcatctcg 16569611
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 9075967 cggccctcgtcaccggcggcacccgcggcatcggg 9075933
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 8917872 cggcgctcgtcaccggcggc 8917853
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 30587536 gtcaccggcggcgccggcggcatcggg 30587562
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 29459092 cgccggcgagatggagctc 29459074
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 16075118 gcctcctcccgcttcgcatctcg 16075096
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 8922102 cggccctcgtcaccggcggcacccgcggcatcggg 8922068
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 438 ataatcttgctgcttgtttt 457
||||||||||||||||||||
Sbjct: 5407409 ataatcttgctgcttgtttt 5407428
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 16149812 gcgctcgtcaccggcggctcccgcggcatcgg 16149843
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 4831973 ccgtggcatcgtctccttcccca 4831995
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggc 250
||||||||||||||||||||
Sbjct: 8920037 cggcgctcgtcaccggcggc 8920018
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 30496114 gtcaccggcggcgccggcggcatcggg 30496140
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 29367670 cgccggcgagatggagctc 29367652
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 16080585 gcctcctcccgcttcgcatctcg 16080563
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 8924267 cggccctcgtcaccggcggcacccgcggcatcggg 8924233
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 40.1 bits (20), Expect = 1.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 233 gcgctcgtcaccggcggcgcctccggcatcgg 264
|||||||||||||||||| || |||||||||
Sbjct: 16158053 gcgctcgtcaccggcggctcccgcggcatcgg 16158084
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 4832794 ccgtggcatcgtctccttcccca 4832816
>gb|AQ362363.2|AQ362363 nbxb0049L13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0049L13r, DNA sequence
Length = 845
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 328 ttagttcaaaaagaaaata 310
>gb|C72550.1|C72550 C72550 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1821_1A, mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 196 tccacccacccctgcgccg 214
>gb|CA756471.1|CA756471 BR030043000_PLATE_C02_11_008.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_C02_11_008.ab1 similar to No protein
aligment, mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 146 gctcgtcaccggcggcgcc 128
>gb|CB655597.1|CB655597 OSJNEc09C21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09C21 5', mRNA sequence
Length = 796
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 523 tccacccacccctgcgccg 541
>gb|AC105261.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_D12,
*** SEQUENCING IN PROGRESS ***, 9 ordered pieces
Length = 135997
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 80992 gcctcctcccgcttcgcatctcg 80970
>dbj|AK058655.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F07, full
insert sequence
Length = 1166
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 89 cggccctcgtcaccggcggcacccgcggcatcggg 123
>dbj|AK061224.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H01, full
insert sequence
Length = 1218
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 223 tccacccacccctgcgccg 241
>dbj|AK069762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027K22, full
insert sequence
Length = 1272
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 90 cggccctcgtcaccggcggcacccgcggcatcggg 124
>dbj|AK071011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080J16, full
insert sequence
Length = 1970
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 1322 cgccggcgagatggagctc 1340
>dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full
insert sequence
Length = 1022
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 153 gtcaccggcggcgccggcggcatcggg 179
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146686
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 98985 gctcgtcaccggcggcgcc 99003
>dbj|AP005870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:B1049E04
Length = 159216
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 17042 ccgtggcatcgtctccttcccca 17020
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
sequence
Length = 139872
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 27687 gtcaccggcggcgccggcggcatcggg 27713
>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0011A24, from chromosome 10, complete sequence
Length = 176832
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 137253 ccgtggcatcgtctccttcccca 137275
>gb|AC144453.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
OSJNBa0050A24, complete sequence
Length = 142574
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 69132 ccgtggcatcgtctccttcccca 69154
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 58503 ccgtggcatcgtctccttcccca 58525
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0650H04
Length = 134533
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 21990 tcgtcaccggcggcgcctc 21972
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0435D08
Length = 148912
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 73193 tcgtcaccggcggcgcctc 73175
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
complete sequence
Length = 138209
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gcctcgtctccttccccac 82
|||||||||||||||||||
Sbjct: 46436 gcctcgtctccttccccac 46454
>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0668C05
Length = 142081
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 136086 ttacagccttacaggtgagtagg 136108
>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0066H10
Length = 200968
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 38960 ttacagccttacaggtgagtagg 38982
>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
OSJNBa0018H09, complete sequence
Length = 155329
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 93283 ccgtggcatcgtctccttcccca 93305
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 85804 ccgtggcatcgtctccttcccca 85826
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 1179768 gctcgtcaccggcggcgcc 1179750
>ref|NT_107208.1| Oryza sativa (japonica cultivar-group)
Length = 292514
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 207030 gcctcctcccgcttcgcatctcg 207008
>dbj|AP005322.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0677G01
Length = 137031
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 68083 ttagttcaaaaagaaaata 68101
>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1012G11
Length = 167168
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 43186 ccgtggcatcgtctccttcccca 43164
>gb|AACV01000262.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000262, whole
genome shotgun sequence
Length = 36618
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 27406 tccacccacccctgcgccg 27424
>gb|AACV01004332.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004332, whole
genome shotgun sequence
Length = 14500
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 7926 ttagttcaaaaagaaaata 7944
>gb|AACV01006822.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006822,
whole genome shotgun sequence
Length = 2297
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 649 gcctcctcccgcttcgcatctcg 671
>gb|AACV01007841.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007841, whole
genome shotgun sequence
Length = 16585
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 9393 cgccggcgagatggagctc 9375
>gb|AACV01007912.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007912, whole
genome shotgun sequence
Length = 55114
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 46020 gtcaccggcggcgccggcggcatcggg 46046
>gb|AACV01011203.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011203, whole
genome shotgun sequence
Length = 23070
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gcctcgtctccttccccac 82
|||||||||||||||||||
Sbjct: 18034 gcctcgtctccttccccac 18052
>gb|AACV01011895.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011895, whole
genome shotgun sequence
Length = 11687
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 9323 gcctcctcccgcttcgcatctcg 9301
>gb|AACV01015484.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015484, whole
genome shotgun sequence
Length = 17961
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 12663 ttacagccttacaggtgagtagg 12685
>gb|AACV01017591.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017591, whole
genome shotgun sequence
Length = 6510
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 1627 ccgtggcatcgtctccttcccca 1605
>gb|AACV01019918.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019918, whole
genome shotgun sequence
Length = 12340
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 1999 tcgtcaccggcggcgcctc 2017
>gb|AACV01025440.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025440, whole
genome shotgun sequence
Length = 14665
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 1645 gctcgtcaccggcggcgcc 1627
>gb|AACV01025882.1| Oryza sativa (japonica cultivar-group) Ctg025882, whole genome
shotgun sequence
Length = 22652
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 8013 ccgtggcatcgtctccttcccca 8035
>gb|AACV01026085.1| Oryza sativa (japonica cultivar-group) Ctg026085, whole genome
shotgun sequence
Length = 10949
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 52 ccgtggcatcgtctccttcccca 30
>gb|AACV01032326.1| Oryza sativa (japonica cultivar-group) Ctg032326, whole genome
shotgun sequence
Length = 2758
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 242 accggcggcgcctccggcatcgg 264
|||||||||| ||||||||||||
Sbjct: 2104 accggcggcggctccggcatcgg 2126
>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0077J17, complete sequence
Length = 141598
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 56114 gcctcctcccgcttcgcatctcg 56092
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1276_B06
Length = 175174
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 166514 tccacccacccctgcgccg 166496
>ref|NM_184553.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2451
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 1657 tccacccacccctgcgccg 1675
>ref|NM_184607.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 375
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 139 gcctcctcccgcttcgcatctcg 117
>ref|NM_187487.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 927
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 231 cggcgctcgtcaccggcggcgcctccggcatcggg 265
|||| ||||||||||||||| || ||||||||||
Sbjct: 56 cggccctcgtcaccggcggcacccgcggcatcggg 90
>ref|NM_195123.1| Oryza sativa (japonica cultivar-group) hypothetical protein
(OSJNBa0011A24.29), mRNA
Length = 375
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 32 ccgtggcatcgtctccttcccca 54
>ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2697502
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 828800 ccgtggcatcgtctccttcccca 828822
>ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 804
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 49 gtcaccggcggcgccggcggcatcggg 75
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 2471860 gcctcctcccgcttcgcatctcg 2471838
>ref|NT_107079.1| Oryza sativa (japonica cultivar-group)
Length = 5472939
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 2056740 ccgtggcatcgtctccttcccca 2056718
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 237 tcgtcaccggcggcgcctc 255
|||||||||||||||||||
Sbjct: 367502 tcgtcaccggcggcgcctc 367484
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 3079014 ttagttcaaaaagaaaata 3079032
>ref|NT_107226.1| Oryza sativa (japonica cultivar-group)
Length = 1041917
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gcctcgtctccttccccac 82
|||||||||||||||||||
Sbjct: 348207 gcctcgtctccttccccac 348225
>ref|NT_107229.1| Oryza sativa (japonica cultivar-group)
Length = 1596128
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 1332369 ccgtggcatcgtctccttcccca 1332391
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 1321740 ccgtggcatcgtctccttcccca 1321762
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 407956 ccgtggcatcgtctccttcccca 407978
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 400477 ccgtggcatcgtctccttcccca 400499
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 239 gtcaccggcggcgcctccggcatcggg 265
||||||||||||||| ||||||||||
Sbjct: 3802617 gtcaccggcggcgccggcggcatcggg 3802643
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 2672835 cgccggcgagatggagctc 2672817
>ref|XM_550270.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2352
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 1558 tccacccacccctgcgccg 1576
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 6968343 ttacagccttacaggtgagtagg 6968365
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 6915309 ccgtggcatcgtctccttcccca 6915287
>gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 genomic sequence,
complete sequence
Length = 126163
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 5765 gcctcctcccgcttcgcatctcg 5743
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0583G08
Length = 135295
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185 tccacccacccctgcgccg 203
|||||||||||||||||||
Sbjct: 6926 tccacccacccctgcgccg 6908
>gb|CH401407.1| Oryza sativa (japonica cultivar-group) scaffold000315 genomic scaffold,
whole genome shotgun sequence
Length = 17755
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 15961 ccgtggcatcgtctccttcccca 15983
>gb|CH401352.1| Oryza sativa (japonica cultivar-group) scaffold000212 genomic
scaffold, whole genome shotgun sequence
Length = 24120
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 9481 ccgtggcatcgtctccttcccca 9503
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 2015971 gctcgtcaccggcggcgcc 2015953
>gb|CH401229.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000066 genomic
scaffold, whole genome shotgun sequence
Length = 2575203
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 1540216 ccgtggcatcgtctccttcccca 1540194
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058
genomic scaffold, whole genome shotgun sequence
Length = 3500188
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 846285 ttacagccttacaggtgagtagg 846307
>gb|CH401205.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000042 genomic
scaffold, whole genome shotgun sequence
Length = 2493951
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 1269531 gcctcctcccgcttcgcatctcg 1269509
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 2518926 gcctcctcccgcttcgcatctcg 2518904
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 3232008 ttagttcaaaaagaaaata 3232026
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 21199617 gctcgtcaccggcggcgcc 21199599
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 6566919 ccgtggcatcgtctccttcccca 6566897
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 6899910 ttacagccttacaggtgagtagg 6899932
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 16685072 ttagttcaaaaagaaaata 16685090
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 ttagttcaaaaagaaaata 371
|||||||||||||||||||
Sbjct: 17016827 ttagttcaaaaagaaaata 17016845
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18 ttacagccttacaggagagtagg 40
||||||||||||||| |||||||
Sbjct: 7012271 ttacagccttacaggtgagtagg 7012293
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 59 ccgtggcctcgtctccttcccca 81
||||||| |||||||||||||||
Sbjct: 7147783 ccgtggcatcgtctccttcccca 7147761
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 25008182 gctcgtcaccggcggcgcc 25008164
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0015K03, complete sequence
Length = 89172
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 115 gcctcgtcccgcttcgcatctcg 137
||||| |||||||||||||||||
Sbjct: 74803 gcctcctcccgcttcgcatctcg 74781
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005H20,
complete sequence
Length = 135560
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 199 cgccggcgagatggagctc 217
|||||||||||||||||||
Sbjct: 118300 cgccggcgagatggagctc 118318
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235 gctcgtcaccggcggcgcc 253
|||||||||||||||||||
Sbjct: 24936388 gctcgtcaccggcggcgcc 24936370
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,388,693
Number of Sequences: 438736
Number of extensions: 1388693
Number of successful extensions: 9533
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7858
Number of HSP's gapped (non-prelim): 1675
length of query: 808
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 787
effective length of database: 2,791,206,460
effective search space: 2196679484020
effective search space used: 2196679484020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)