BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA... 581 e-163
gb|CV731236.1|CV731236 FLO--05-C22.b1 Rice flower lambda ph... 539 e-151
gb|AU108626.1|AU108626 AU108626 Rice callus Oryza sativa (j... 490 e-136
dbj|AK119405.1| Oryza sativa (japonica cultivar-group) cDNA... 432 e-118
gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) c... 357 7e-096
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 357 7e-096
dbj|AP005567.3| Oryza sativa (japonica cultivar-group) geno... 357 7e-096
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 357 7e-096
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 357 7e-096
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 357 7e-096
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 357 7e-096
gb|CV731237.1|CV731237 FLO--05-C22.g1 Rice flower lambda ph... 272 3e-070
dbj|AK068531.1| Oryza sativa (japonica cultivar-group) cDNA... 244 7e-062
gb|C96916.1|C96916 C96916 Rice callus Oryza sativa (japonic... 240 1e-060
gb|CB678468.1|CB678468 OSJNEe16I08.r OSJNEe Oryza sativa (j... 198 4e-048
gb|CF306744.1|CF306744 HDA1--04-L18.g1 OsHDAC1-overexpressi... 186 2e-044
gb|C97574.1|C97574 C97574 Rice callus Oryza sativa (japonic... 155 5e-035
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 147 1e-032
gb|AACV01014905.1| Oryza sativa (japonica cultivar-group) c... 147 1e-032
dbj|AP004329.3| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chro... 82 6e-013
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 82 6e-013
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 82 6e-013
gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) c... 82 6e-013
dbj|AK059380.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hyp... 68 1e-008
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L0... 66 4e-008
gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 66 4e-008
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AK066204.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (j... 52 6e-004
dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chro... 52 6e-004
dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
dbj|AP005630.3| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AACV01004388.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA 52 6e-004
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 52 6e-004
ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-... 52 6e-004
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|C73265.1|C73265 C73265 Rice panicle at flowering stage O... 48 0.009
gb|AU161988.1|AU161988 AU161988 Rice callus Oryza sativa (j... 48 0.009
dbj|AK100228.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
gb|AACV01006898.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_468666.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|AC120529.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.035
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.14
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.14
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.14
>dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149G11, full
insert sequence
Length = 2482
Score = 581 bits (293), Expect = e-163
Identities = 432/483 (89%)
Strand = Plus / Plus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 1681 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 1740
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 1741 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 1800
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 1801 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 1860
Query: 268 gatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttggaag 327
||||| ||||||||||||||||| ||||||| |||||||||||| |||| |||||||||
Sbjct: 1861 gatatcactgggatctaccacaagtggcaaagcatgaatgaagaccgggttctttggaag 1920
Query: 328 cttgggacacttccgcctggcctcttgaccttctataagttgacgcacccactggacaag 387
|||||||| ||||| ||||||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 1921 cttgggacgcttccacctggcctcttaaccttctacaagttgacgcatccccttgacaag 1980
Query: 388 tcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagacaat 447
|| |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 1981 tcgtggcatgtccttggattaggatacaacccaagcattgatcgctcagagatagataat 2040
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaag 507
|||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct: 2041 gctgctgttgttcattacaacggtaacatgaagccatggctggagttagcaatgaccaag 2100
Query: 508 taccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgcaac 567
||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct: 2101 tacagaccatattggacaaggtatataaagtatgatcacccttacatccgtggatgcaac 2160
Query: 568 ttg 570
|||
Sbjct: 2161 ttg 2163
>gb|CV731236.1|CV731236 FLO--05-C22.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-C22,
mRNA sequence
Length = 500
Score = 539 bits (272), Expect = e-151
Identities = 356/384 (92%)
Strand = Plus / Plus
Query: 187 attgctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgat 246
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 22 attgctcggaactttgatccaaatgcatgtggctgggcttatggaatgaacatctttgat 81
Query: 247 ctgagggagtggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaat 306
|||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct: 82 ctgaaggagtggaagaagaaagatatcactgggatctaccacaagtggcaaagcatgaat 141
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 142 gaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttctacaag 201
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 202 ttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaagcatt 261
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
|| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 262 gatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagccatgg 321
Query: 487 ctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatcac 546
|||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||||||
Sbjct: 322 ctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatgatcac 381
Query: 547 ccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||
Sbjct: 382 ccttacatccgtggatgcaacttg 405
>gb|AU108626.1|AU108626 AU108626 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12757, mRNA sequence
Length = 717
Score = 490 bits (247), Expect = e-136
Identities = 360/394 (91%), Gaps = 4/394 (1%)
Strand = Plus / Plus
Query: 181 ccacacattgctcggaac--tttgatccaaatgc-atgtggctgggcttatgggatgaac 237
||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct: 22 ccacatattgctcggaaacttttgatccaaatgccatgtggctgggcttatggaatgaac 81
Query: 238 atctttgatctgag-ggagtggaagaagaaagatattactgggatctaccacaaatggca 296
||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 82 atctttgatctgaaaggagtggaagaagaaagatatcactgggatctaccacaagtggca 141
Query: 297 aaatatgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgac 356
|| |||||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 142 aagcatgaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaac 201
Query: 357 cttctataagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaa 416
|||||| ||||||||||| || || |||||||| |||||||| |||||||||||||||||
Sbjct: 202 cttctacaagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaa 261
Query: 417 cccaagcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacat 476
|||||||||||| || ||||||||||| ||||||||||| ||||||||||| || |||||
Sbjct: 262 cccaagcattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacat 321
Query: 477 gaagccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||
Sbjct: 322 gaagccatggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaa 381
Query: 537 gtatgatcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||||||||
Sbjct: 382 gtatgatcacccttacatccgtggatgcaacttg 415
>dbj|AK119405.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-E10, full
insert sequence
Length = 2494
Score = 432 bits (218), Expect = e-118
Identities = 338/379 (89%)
Strand = Plus / Plus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 1681 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 1740
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 1741 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 1800
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatgaag 310
|||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||
Sbjct: 1801 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaacatgaacgaag 1860
Query: 311 acagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataagttga 370
|| |||| ||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 1861 accgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaagttga 1920
Query: 371 cgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcattgacc 430
|||| || || |||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 1921 cgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcattgacc 1980
Query: 431 gttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggctgg 490
| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||||||
Sbjct: 1981 gctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatggctgg 2040
Query: 491 agctagcaatgaccaagta 509
|| | ||||||||||||||
Sbjct: 2041 agttggcaatgaccaagta 2059
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 2059 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 2118
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 2119 ggatgcaacttg 2130
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 1638 tgggatgttgatcttaatgggaaggtca 1665
>gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020445, whole
genome shotgun sequence
Length = 25627
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 17564 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 17623
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 17624 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 17683
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 17684 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 17743
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 17744 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 17803
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 17804 tcacccttacatccgtggatgcaacttg 17831
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Plus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 17246 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 17305
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 17306 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 17365
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 17366 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 17425
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 17426 gatatcactgggatctaccacaagtggcaaa 17456
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Plus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 23193 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 23252
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 23253 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 23312
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 23313 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 23372
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 23373 ctggagttggcaatgaccaagta 23395
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Plus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 22914 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 22973
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 22974 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 23033
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 23034 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 23082
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 23395 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 23454
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 23455 ggatgcaacttg 23466
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 22871 tgggatgttgatcttaatgggaaggtca 22898
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0515E01
Length = 140063
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 27579 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 27520
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 27519 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 27460
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 27459 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 27400
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 27399 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 27340
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 27339 tcacccttacatccgtggatgcaacttg 27312
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 27897 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 27838
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 27837 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 27778
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 27777 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 27718
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 27717 gatatcactgggatctaccacaagtggcaaa 27687
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Minus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 21950 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 21891
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 21890 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 21831
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 21830 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 21771
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 21770 ctggagttggcaatgaccaagta 21748
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 22229 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 22170
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 22169 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 22110
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 22109 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 22061
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 21748 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 21689
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 21688 ggatgcaacttg 21677
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 22272 tgggatgttgatcttaatgggaaggtca 22245
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1254_E07
Length = 124028
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 79568 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 79509
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 79508 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 79449
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 79448 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 79389
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 79388 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 79329
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 79328 tcacccttacatccgtggatgcaacttg 79301
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 79886 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 79827
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 79826 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 79767
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 79766 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 79707
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 79706 gatatcactgggatctaccacaagtggcaaa 79676
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Minus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 73939 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 73880
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 73879 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 73820
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 73819 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 73760
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 73759 ctggagttggcaatgaccaagta 73737
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 74218 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 74159
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 74158 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 74099
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 74098 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 74050
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 73737 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 73678
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 73677 ggatgcaacttg 73666
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 74261 tgggatgttgatcttaatgggaaggtca 74234
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 455421 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 455362
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 455361 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 455302
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 455301 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 455242
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 455241 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 455182
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 455181 tcacccttacatccgtggatgcaacttg 455154
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 455739 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 455680
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 455679 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 455620
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 455619 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 455560
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 455559 gatatcactgggatctaccacaagtggcaaa 455529
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Minus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 449792 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 449733
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 449732 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 449673
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 449672 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 449613
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 449612 ctggagttggcaatgaccaagta 449590
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 450071 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 450012
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 450011 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 449952
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 449951 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 449903
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 449590 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 449531
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 449530 ggatgcaacttg 449519
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 450114 tgggatgttgatcttaatgggaaggtca 450087
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 10044207 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 10044148
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 10044147 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 10044088
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 10044087 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 10044028
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 10044027 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 10043968
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 10043967 tcacccttacatccgtggatgcaacttg 10043940
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 10044525 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 10044466
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 10044465 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 10044406
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 10044405 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 10044346
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 10044345 gatatcactgggatctaccacaagtggcaaa 10044315
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Minus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 10038578 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 10038519
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 10038518 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 10038459
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 10038458 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 10038399
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 10038398 ctggagttggcaatgaccaagta 10038376
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 10038857 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 10038798
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 10038797 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 10038738
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 10038737 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 10038689
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 10038376 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 10038317
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 10038316 ggatgcaacttg 10038305
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 10038900 tgggatgttgatcttaatgggaaggtca 10038873
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 19518018 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 19517959
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 19517958 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 19517899
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 19517898 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 19517839
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 19517838 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 19517779
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 19517778 tcacccttacatccgtggatgcaacttg 19517751
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 19518336 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 19518277
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 19518276 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 19518217
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 19518216 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 19518157
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 19518156 gatatcactgggatctaccacaagtggcaaa 19518126
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Minus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 19512389 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 19512330
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 19512329 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 19512270
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 19512269 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 19512210
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 19512209 ctggagttggcaatgaccaagta 19512187
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 19512668 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 19512609
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 19512608 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 19512549
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 19512548 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 19512500
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 19512187 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 19512128
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 19512127 ggatgcaacttg 19512116
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 19512711 tgggatgttgatcttaatgggaaggtca 19512684
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 357 bits (180), Expect = 7e-096
Identities = 246/268 (91%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 20561921 gaatgaagaccgggttctttggaagcttgggacgcttccacctggcctcttaaccttcta 20561862
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||||||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 20561861 caagttgacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaag 20561802
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
|||||| || ||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 20561801 cattgatcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagcc 20561742
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatga 542
|||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||
Sbjct: 20561741 atggctggagttagcaatgaccaagtacagaccatattggacaaggtatataaagtatga 20561682
Query: 543 tcacccttacatccgtggatgcaacttg 570
||||||||||||||||||||||||||||
Sbjct: 20561681 tcacccttacatccgtggatgcaacttg 20561654
Score = 232 bits (117), Expect = 3e-058
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
||||| |||||||||||||| |||||||||| | ||||||| ||||||
Sbjct: 20562239 tgggacgttgatcttaatgggaaggtcaatggtgcagtggagacctgtggggagagtttc 20562180
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 20562179 catcgttttgacaagtaccttaacttttccaatccacatattgctcggaactttgatcca 20562120
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 20562119 aatgcatgtggctgggcttatggaatgaacatctttgatctgaaggagtggaagaagaaa 20562060
Query: 268 gatattactgggatctaccacaaatggcaaa 298
||||| ||||||||||||||||| |||||||
Sbjct: 20562059 gatatcactgggatctaccacaagtggcaaa 20562029
Score = 220 bits (111), Expect = 1e-054
Identities = 180/203 (88%)
Strand = Plus / Minus
Query: 307 gaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataag 366
|||||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct: 20556292 gaagaccgggttctttggaagcttgggacacttccacacggcctcttgaccttcttcaag 20556233
Query: 367 ttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||| || || |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 20556232 ttgacgcatccccttgacaagtcgtggcatgtcctcggattaggatacaacccaagcatt 20556173
Query: 427 gaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatgg 486
||||| ||||||||||| ||||| || || ||| ||||||| || |||||||||||||||
Sbjct: 20556172 gaccgctcagagatagataatgcagccgttgttgattacaacggtaacatgaagccatgg 20556113
Query: 487 ctggagctagcaatgaccaagta 509
|||||| | ||||||||||||||
Sbjct: 20556112 ctggagttggcaatgaccaagta 20556090
Score = 214 bits (108), Expect = 7e-053
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| ||||||||| ||||||||||| |||||||| |||||||||||||| || |
Sbjct: 20556571 cctgtggggagagttttcatcgttttgacaagtatcttaacttttcaaatccacatatcg 20556512
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 20556511 ctcggaacttcgatccaaatgcatgtggctgggcatatggaatgaacatctttgatctga 20556452
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaa 299
|||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 20556451 acgagtggaagaagaaagatatcactgggatctaccacaggtggcaaaa 20556403
Score = 111 bits (56), Expect = 7e-022
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 499 atgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgt 558
|||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 20556090 atgaccaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgt 20556031
Query: 559 ggatgcaacttg 570
||||||||||||
Sbjct: 20556030 ggatgcaacttg 20556019
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 tgggatgttgatcttaatggaaaggtca 115
|||||||||||||||||||| |||||||
Sbjct: 20556614 tgggatgttgatcttaatgggaaggtca 20556587
>gb|CV731237.1|CV731237 FLO--05-C22.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-C22,
mRNA sequence
Length = 488
Score = 272 bits (137), Expect = 3e-070
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 382 gacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagata 441
|||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 478 gacaagtcgtggcatgtccttggattaggatacaacccaagcattgatcgctcagagata 419
Query: 442 gacaatgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatg 501
|| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct: 418 gataatgctgctgttgttcattacaacggtaacatgaagccatggctggagttagcaatg 359
Query: 502 accaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtgga 561
||||||||| ||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct: 358 accaagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgtgga 299
Query: 562 tgcaacttg 570
|||||||||
Sbjct: 298 tgcaacttg 290
>dbj|AK068531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D09, full
insert sequence
Length = 2206
Score = 244 bits (123), Expect = 7e-062
Identities = 318/383 (83%)
Strand = Plus / Plus
Query: 154 tttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatccaaatgca 213
|||||||| || || ||||||||||||||| | ||||||| |||||| ||||| |||||
Sbjct: 1463 tttgacaagtacctcaatttttcaaatccaaatattgctcagaacttcgatcctaatgct 1522
Query: 214 tgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaagatatt 273
||||||||||| ||||| ||||| || |||||| || || ||||||||||| || |||
Sbjct: 1523 tgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaagaagaaggacatt 1582
Query: 274 actgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttggaagcttggg 333
||||| || || ||||||||||| || ||||||||| ||||| | || ||||||||||||
Sbjct: 1583 actggcatttatcacaaatggcagaacatgaatgaaaacaggctgctctggaagcttggg 1642
Query: 334 acacttccgcctggcctcttgaccttctataagttgacgcacccactggacaagtcatgg 393
||||| ||||| || ||| | || ||||| ||||| || || || |||||||| ||||||
Sbjct: 1643 acactgccgccaggtctcctaacattctacaagttaacacatcccctggacaaatcatgg 1702
Query: 394 catgttcttggattaggatacaacccaagcattgaccgttcagagatagacaatgctgct 453
||||||||||| ||||| ||||||||| ||| || || ||||| ||||| || || ||
Sbjct: 1703 catgttcttggcttagggtacaacccatccatcgagcgctcagaaatagataacgccgcc 1762
Query: 454 gtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaagtaccga 513
|| | || ||||| |||||||||||||||||||||||| | |||||| | |||||||||
Sbjct: 1763 gtcatccactacaacgggaacatgaagccatggctggagattgcaatgtcgaagtaccga 1822
Query: 514 ccatattggaccaagtatatcaa 536
||||| ||||| ||||| |||||
Sbjct: 1823 ccatactggacaaagtacatcaa 1845
>gb|C96916.1|C96916 C96916 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50118_12Z, mRNA sequence
Length = 682
Score = 240 bits (121), Expect = 1e-060
Identities = 158/171 (92%)
Strand = Plus / Plus
Query: 400 cttggattaggatacaacccaagcattgaccgttcagagatagacaatgctgctgtggtt 459
|||||||||||||||| |||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 92 cttggattaggatacancccaagcattgatcgctcagagatagataatgctgctgttgtt 151
Query: 460 cattacaatgggaacatgaagccatggctggagctagcaatgaccaagtaccgaccatat 519
|||||||| || ||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 152 cattacaacggtaacatgaagccatggctggagttagcaatgaccaagtacagnccatat 211
Query: 520 tggaccaagtatatcaagtatgatcacccttacatccgtggatgcaacttg 570
||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 212 tggacaaggtatataaagtatgatcacccttacatccgtggatgcaacttg 262
>gb|CB678468.1|CB678468 OSJNEe16I08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16I08 3', mRNA sequence
Length = 475
Score = 198 bits (100), Expect = 4e-048
Identities = 180/204 (88%), Gaps = 2/204 (0%)
Strand = Plus / Minus
Query: 369 gacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcattga 428
|||||| || || |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 475 gacgcatccccttgacaagtcgtggcatgtccttggattaggatacaacccaagcattga 416
Query: 429 ccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
|| ||||||||||| ||||||||||| ||||||||||| || |||||||||||| ||||
Sbjct: 415 tcgctcagagatagataatgctgctgttgttcattacaacggtaacatgaagccacggct 356
Query: 489 ggagctagcaatgac-caagtaccg-accatattggaccaagtatatcaagtatgatcac 546
|||| |||||||||| ||||||| | |||||||||| | | |||||| |||||||||| |
Sbjct: 355 ggagttagcaatgacacaagtacagtaccatattggtcaaggtatataaagtatgatccc 296
Query: 547 ccttacatccgtggatgcaacttg 570
|||| |||| ||||||||| ||||
Sbjct: 295 ccttccatcggtggatgcaccttg 272
>gb|CF306744.1|CF306744 HDA1--04-L18.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--04-L18, mRNA sequence
Length = 560
Score = 186 bits (94), Expect = 2e-044
Identities = 118/126 (93%)
Strand = Plus / Minus
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgacc 504
||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct: 557 aatgctgctgttgttcattacaacggtaacatgaagccatggctggagttagcaatgacc 498
Query: 505 aagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgc 564
|||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct: 497 aagtacagaccatattggacaaggtatataaagtatgatcacccttacatccgtggatgc 438
Query: 565 aacttg 570
||||||
Sbjct: 437 aacttg 432
>gb|C97574.1|C97574 C97574 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60415_8Z, mRNA sequence
Length = 758
Score = 155 bits (78), Expect = 5e-035
Identities = 302/370 (81%), Gaps = 5/370 (1%)
Strand = Plus / Plus
Query: 169 aatttttcaaatccacacattg-ctcggaactttgatccaaatgcatgtggctggg-ctt 226
||||||||||||||| | ||| ||| |||||| ||||| ||||| |||||||||| | |
Sbjct: 3 aatttttcaaatccaaattttggctcagaacttcgatcctaatgcttgtggctgggncgt 62
Query: 227 atgggatgaacatctttgatctgagggagtggaagaagaaagatattactgggatctacc 286
|||| ||||| || |||||| || || |||||||||| || |||||||| || || |
Sbjct: 63 atggaatgaatatgtttgatttggaagattggaagaagag-gacattactggcatttatc 121
Query: 287 acaaatggcaaaatatgaatgaagacagggtcctttggaagcttgggacacttccgcctg 346
|||| ||||| || |||| |||| ||||| | || ||||||||||||||||| ||||| |
Sbjct: 122 acaa-tggcagaacatga-tgaaaacaggctgctctggaagcttgggacactgccgccag 179
Query: 347 gcctcttgaccttctataagttgacgcacccactggacaagtcatggcatgttcttggat 406
| ||| | || ||||| ||||| || || || |||||||| ||||||||||||||||| |
Sbjct: 180 gtctcctaacattctacaagttaacacatcccctggacaaatcatggcatgttcttggct 239
Query: 407 taggatacaacccaagcattgaccgttcagagatagacaatgctgctgtggttcattaca 466
|||| ||||||||| ||| || || ||||| ||||| || || || || | || ||||
Sbjct: 240 tagggtacaacccatccatcgagcgctcagaaatagataacgccgccgtcatccactaca 299
Query: 467 atgggaacatgaagccatggctggagctagcaatgaccaagtaccgaccatattggacca 526
| |||||||||||||||||||||||| | |||||| | |||||||||||||| ||||| |
Sbjct: 300 acgggaacatgaagccatggctggagattgcaatgtcgaagtaccgaccatactggacaa 359
Query: 527 agtatatcaa 536
|||| |||||
Sbjct: 360 agtacatcaa 369
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 147 bits (74), Expect = 1e-032
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
||||||| ||||| | || ||||||||||||||||| ||||| || ||| | || |||||
Sbjct: 774707 gaatgaaaacaggctgctctggaagcttgggacactgccgccaggtctcctaacattcta 774766
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||| || || || |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 774767 caagttaacacatcccctggacaaatcatggcatgttcttggcttagggtacaacccatc 774826
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| || || ||||| ||||| || || || || | || ||||| ||||||||||||||
Sbjct: 774827 catcgagcgctcagaaatagataacgccgccgtcatccactacaacgggaacatgaagcc 774886
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||| | |||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 774887 atggctggagattgcaatgtcgaagtaccgaccatactggacaaagtacatcaa 774940
Score = 127 bits (64), Expect = 1e-026
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||||||||||||||| || || ||||||||||||||| | ||||||| ||||||
Sbjct: 774253 gagttttcaccgttttgacaagtacctcaatttttcaaatccaaatattgctcagaactt 774312
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
||||| ||||| ||||||||||| ||||| ||||| || |||||| || || |||||
Sbjct: 774313 cgatcctaatgcttgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaa 774372
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
|||||| || |||||||| || || |||||||||||
Sbjct: 774373 gaagaaggacattactggcatttatcacaaatggca 774408
>gb|AACV01014905.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014905, whole
genome shotgun sequence
Length = 25723
Score = 147 bits (74), Expect = 1e-032
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
||||||| ||||| | || ||||||||||||||||| ||||| || ||| | || |||||
Sbjct: 13814 gaatgaaaacaggctgctctggaagcttgggacactgccgccaggtctcctaacattcta 13873
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||| || || || |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 13874 caagttaacacatcccctggacaaatcatggcatgttcttggcttagggtacaacccatc 13933
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| || || ||||| ||||| || || || || | || ||||| ||||||||||||||
Sbjct: 13934 catcgagcgctcagaaatagataacgccgccgtcatccactacaacgggaacatgaagcc 13993
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||| | |||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 13994 atggctggagattgcaatgtcgaagtaccgaccatactggacaaagtacatcaa 14047
Score = 127 bits (64), Expect = 1e-026
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||||||||||||||| || || ||||||||||||||| | ||||||| ||||||
Sbjct: 13360 gagttttcaccgttttgacaagtacctcaatttttcaaatccaaatattgctcagaactt 13419
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
||||| ||||| ||||||||||| ||||| ||||| || |||||| || || |||||
Sbjct: 13420 cgatcctaatgcttgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaa 13479
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
|||||| || |||||||| || || |||||||||||
Sbjct: 13480 gaagaaggacattactggcatttatcacaaatggca 13515
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1663_H12
Length = 125422
Score = 147 bits (74), Expect = 1e-032
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
||||||| ||||| | || ||||||||||||||||| ||||| || ||| | || |||||
Sbjct: 68248 gaatgaaaacaggctgctctggaagcttgggacactgccgccaggtctcctaacattcta 68307
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||| || || || |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 68308 caagttaacacatcccctggacaaatcatggcatgttcttggcttagggtacaacccatc 68367
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| || || ||||| ||||| || || || || | || ||||| ||||||||||||||
Sbjct: 68368 catcgagcgctcagaaatagataacgccgccgtcatccactacaacgggaacatgaagcc 68427
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||| | |||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 68428 atggctggagattgcaatgtcgaagtaccgaccatactggacaaagtacatcaa 68481
Score = 127 bits (64), Expect = 1e-026
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||||||||||||||| || || ||||||||||||||| | ||||||| ||||||
Sbjct: 67794 gagttttcaccgttttgacaagtacctcaatttttcaaatccaaatattgctcagaactt 67853
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
||||| ||||| ||||||||||| ||||| ||||| || |||||| || || |||||
Sbjct: 67854 cgatcctaatgcttgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaa 67913
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
|||||| || |||||||| || || |||||||||||
Sbjct: 67914 gaagaaggacattactggcatttatcacaaatggca 67949
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 147 bits (74), Expect = 1e-032
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
||||||| ||||| | || ||||||||||||||||| ||||| || ||| | || |||||
Sbjct: 11055924 gaatgaaaacaggctgctctggaagcttgggacactgccgccaggtctcctaacattcta 11055983
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||| || || || |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 11055984 caagttaacacatcccctggacaaatcatggcatgttcttggcttagggtacaacccatc 11056043
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| || || ||||| ||||| || || || || | || ||||| ||||||||||||||
Sbjct: 11056044 catcgagcgctcagaaatagataacgccgccgtcatccactacaacgggaacatgaagcc 11056103
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||| | |||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 11056104 atggctggagattgcaatgtcgaagtaccgaccatactggacaaagtacatcaa 11056157
Score = 127 bits (64), Expect = 1e-026
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||||||||||||||| || || ||||||||||||||| | ||||||| ||||||
Sbjct: 11055470 gagttttcaccgttttgacaagtacctcaatttttcaaatccaaatattgctcagaactt 11055529
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
||||| ||||| ||||||||||| ||||| ||||| || |||||| || || |||||
Sbjct: 11055530 cgatcctaatgcttgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaa 11055589
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
|||||| || |||||||| || || |||||||||||
Sbjct: 11055590 gaagaaggacattactggcatttatcacaaatggca 11055625
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 11765211 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 11765152
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 11765151 gtggaagaagcaaaatatcactggaatatacca 11765119
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 147 bits (74), Expect = 1e-032
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
||||||| ||||| | || ||||||||||||||||| ||||| || ||| | || |||||
Sbjct: 28754661 gaatgaaaacaggctgctctggaagcttgggacactgccgccaggtctcctaacattcta 28754720
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||| || || || |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 28754721 caagttaacacatcccctggacaaatcatggcatgttcttggcttagggtacaacccatc 28754780
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| || || ||||| ||||| || || || || | || ||||| ||||||||||||||
Sbjct: 28754781 catcgagcgctcagaaatagataacgccgccgtcatccactacaacgggaacatgaagcc 28754840
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||| | |||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 28754841 atggctggagattgcaatgtcgaagtaccgaccatactggacaaagtacatcaa 28754894
Score = 127 bits (64), Expect = 1e-026
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||||||||||||||| || || ||||||||||||||| | ||||||| ||||||
Sbjct: 28754207 gagttttcaccgttttgacaagtacctcaatttttcaaatccaaatattgctcagaactt 28754266
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
||||| ||||| ||||||||||| ||||| ||||| || |||||| || || |||||
Sbjct: 28754267 cgatcctaatgcttgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaa 28754326
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
|||||| || |||||||| || || |||||||||||
Sbjct: 28754327 gaagaaggacattactggcatttatcacaaatggca 28754362
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 29463948 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 29463889
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 29463888 gtggaagaagcaaaatatcactggaatatacca 29463856
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 147 bits (74), Expect = 1e-032
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 303 gaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttcta 362
||||||| ||||| | || ||||||||||||||||| ||||| || ||| | || |||||
Sbjct: 29624663 gaatgaaaacaggctgctctggaagcttgggacactgccgccaggtctcctaacattcta 29624722
Query: 363 taagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaacccaag 422
||||| || || || |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 29624723 caagttaacacatcccctggacaaatcatggcatgttcttggcttagggtacaacccatc 29624782
Query: 423 cattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagcc 482
||| || || ||||| ||||| || || || || | || ||||| ||||||||||||||
Sbjct: 29624783 catcgagcgctcagaaatagataacgccgccgtcatccactacaacgggaacatgaagcc 29624842
Query: 483 atggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaa 536
|||||||||| | |||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 29624843 atggctggagattgcaatgtcgaagtaccgaccatactggacaaagtacatcaa 29624896
Score = 127 bits (64), Expect = 1e-026
Identities = 133/156 (85%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
||||||||||||||||||||| || || ||||||||||||||| | ||||||| ||||||
Sbjct: 29624209 gagttttcaccgttttgacaagtacctcaatttttcaaatccaaatattgctcagaactt 29624268
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
||||| ||||| ||||||||||| ||||| ||||| || |||||| || || |||||
Sbjct: 29624269 cgatcctaatgcttgtggctgggcgtatggaatgaatatgtttgatttggaagaatggaa 29624328
Query: 261 gaagaaagatattactgggatctaccacaaatggca 296
|||||| || |||||||| || || |||||||||||
Sbjct: 29624329 gaagaaggacattactggcatttatcacaaatggca 29624364
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 30433259 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 30433200
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 30433199 gtggaagaagcaaaatatcactggaatatacca 30433167
>dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1165_E01,
*** SEQUENCING IN PROGRESS ***
Length = 101546
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 54479 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 54538
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 54539 gtggaagaagcaaaatatcactggaatatacca 54571
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 70620 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 70561
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 70560 gtggaagaagcaaaatatcactggaatatacca 70528
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 70620 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 70561
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 70560 gtggaagaagcaaaatatcactggaatatacca 70528
>gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014968, whole
genome shotgun sequence
Length = 17272
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| |||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 5832 gaactttgatccacatgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 5773
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 5772 gtggaagaagcaaaatatcactggaatatacca 5740
>dbj|AK059380.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G01, full
insert sequence
Length = 451
Score = 77.8 bits (39), Expect = 1e-011
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 528 gtatatcaagtatgatcacccttacatccgtggatgcaacttg 570
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtatataaagtatgatcacccttacatccgtggatgcaacttg 47
>dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A03, full
insert sequence
Length = 1574
Score = 67.9 bits (34), Expect = 1e-008
Identities = 94/114 (82%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 879 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 938
Query: 255 gtggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatga 308
|||||||||| || |||| ||||| || ||||| | |||||| || |||||||
Sbjct: 939 gtggaagaagcaaaatatcactggaatataccattattggcaagatctgaatga 992
>ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hypothetical protein
(OSJNBa0073L01.13), mRNA
Length = 1836
Score = 67.9 bits (34), Expect = 1e-008
Identities = 94/114 (82%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 1449 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 1508
Query: 255 gtggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatga 308
|||||||||| || |||| ||||| || ||||| | |||||| || |||||||
Sbjct: 1509 gtggaagaagcaaaatatcactggaatataccattattggcaagatctgaatga 1562
>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
sequence
Length = 179199
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 70204 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 70263
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 70264 gtggaagaagcaaaatatcactggaatatacca 70296
>gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021336, whole
genome shotgun sequence
Length = 24548
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 2726 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 2667
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 2666 gtggaagaagcaaaatatcactggaatatacca 2634
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 1372932 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 1372991
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 1372992 gtggaagaagcaaaatatcactggaatatacca 1373024
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 1559218 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 1559277
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 1559278 gtggaagaagcaaaatatcactggaatatacca 1559310
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 9949536 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 9949595
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 9949596 gtggaagaagcaaaatatcactggaatatacca 9949628
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 10739436 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 10739495
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 10739496 gtggaagaagcaaaatatcactggaatatacca 10739528
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 65.9 bits (33), Expect = 4e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| ||||| |||| ||
Sbjct: 10745475 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttgacctgaaaga 10745534
Query: 255 gtggaagaagaaagatattactgggatctacca 287
|||||||||| || |||| ||||| || |||||
Sbjct: 10745535 gtggaagaagcaaaatatcactggaatatacca 10745567
>dbj|AK066204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056D06, full
insert sequence
Length = 2974
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
|||||| |||||| ||| ||||| ||||||| |||||||||||| |||| |||| ||
Sbjct: 2349 gaacttcgatccacgtgcttgtgggtgggcttttgggatgaacatgtttggcctgaaaga 2408
Query: 255 gtggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatga 308
|||||||||| || |||| ||||| || ||||| | |||||| || |||||||
Sbjct: 2409 gtggaagaagcaaaatatcactggaatataccattattggcaagatctgaatga 2462
>gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03I06 3', mRNA sequence
Length = 853
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 750 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 705
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 505 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 462
>dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0416F07, ***
SEQUENCING IN PROGRESS ***
Length = 136073
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 38321 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 38366
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 38959 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 39002
>dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023H24, full
insert sequence
Length = 2047
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1314 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 1359
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 1559 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 1602
>dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K22, full
insert sequence
Length = 2023
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1292 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 1337
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 1537 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 1580
>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0021C10
Length = 119527
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 16142 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 16097
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 15504 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 15461
>gb|AACV01004388.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004388, whole
genome shotgun sequence
Length = 12689
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 7090 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 7045
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 6452 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 6409
>ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2022
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1291 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 1336
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 1536 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 1579
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 3722315 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 3722270
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 3721677 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 3721634
>ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0021C10.5
mRNA
Length = 2047
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1314 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 1359
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 1559 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 1602
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 3890640 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 3890595
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 3890002 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 3889959
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 17343704 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 17343659
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 17343066 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 17343023
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||| ||||| ||||| |||||| ||||||||||
Sbjct: 17660128 atcctaatgcatgtggatgggcatatggcatgaacttctttgatct 17660083
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| ||| |||||||||||||| ||||||||
Sbjct: 17659490 gctgctgttgtgcatttcaacgggaacatgaagccctggctgga 17659447
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,428,463
Number of Sequences: 438736
Number of extensions: 1428463
Number of successful extensions: 8968
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8527
Number of HSP's gapped (non-prelim): 429
length of query: 969
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 948
effective length of database: 2,791,206,460
effective search space: 2646063724080
effective search space used: 2646063724080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)