BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAT2e04.yg.2.1
(424 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB681746.1|CB681746 OSJNEf08G03.f OSJNEf Oryza sativa (j... 319 7e-085
dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA... 319 7e-085
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 174 2e-041
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 174 2e-041
gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) c... 174 2e-041
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 174 2e-041
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 174 2e-041
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 174 2e-041
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 174 2e-041
>gb|CB681746.1|CB681746 OSJNEf08G03.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08G03 5', mRNA sequence
Length = 824
Score = 319 bits (161), Expect = 7e-085
Identities = 350/413 (84%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 265 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 324
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 325 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 384
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 385 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 444
Query: 192 tcggggaatgcggttgctcggttctttgttgcgctgagccacagaaaggagataaatgca 251
||| |||| ||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 445 ctgggaaatgtggttgctcggttctttgttgcactgagtcatagaaaagagataaatgca 504
Query: 252 gcactgaagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccgg 311
||||| |||| |||||||| ||||||||||| | ||||||||||| || || |||||
Sbjct: 505 gcacttaagacagaagcagattattttggagatgttgtcattctgccatttattgaccga 564
Query: 312 tatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgcacaatgtcact 371
|||||||| |||||||||||||| || || |||||| ||| |||||||| ||||| ||
Sbjct: 565 tatgagctggtggttctgaaaacagtcgcaatatgtgaatttggggtgcaaaatgtaacc 624
Query: 372 gcagattacatcatgaagtgcgacgatgacacctttgtgcggctggatatagt 424
||||| || |||||||| || || ||||||||||||||| |||||||| ||||
Sbjct: 625 gcagagtatatcatgaaatgtgatgatgacacctttgtgaggctggatgtagt 677
>dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A12, full
insert sequence
Length = 2495
Score = 319 bits (161), Expect = 7e-085
Identities = 350/413 (84%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1234 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 1293
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 1294 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 1353
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 1354 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 1413
Query: 192 tcggggaatgcggttgctcggttctttgttgcgctgagccacagaaaggagataaatgca 251
||| |||| ||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 1414 ctgggaaatgtggttgctcggttctttgttgcactgagtcatagaaaagagataaatgca 1473
Query: 252 gcactgaagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccgg 311
||||| |||| |||||||| ||||||||||| | ||||||||||| || || |||||
Sbjct: 1474 gcacttaagacagaagcagattattttggagattttgtcattctgccatttattgaccga 1533
Query: 312 tatgagctagtggttctgaaaacggttgcgatatgtcaatacggggtgcacaatgtcact 371
|||||||| |||||||||||||| || || |||||| ||| |||||||| ||||| ||
Sbjct: 1534 tatgagctggtggttctgaaaacagtcgcaatatgtgaatttggggtgcaaaatgtaacc 1593
Query: 372 gcagattacatcatgaagtgcgacgatgacacctttgtgcggctggatatagt 424
||||| || |||||||| || || ||||||||||||||| |||||||| ||||
Sbjct: 1594 gcagagtatatcatgaaatgtgatgatgacacctttgtgaggctggatgtagt 1646
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Minus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 59656 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 59597
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 59596 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 59537
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 59536 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 59477
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 59476 ctgggaaatgtggttgctcggttctttgttgc 59445
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 58805 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 58746
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 58745 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 58692
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 58590 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 58531
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 58530 ggatgtagt 58522
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 2223613 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 2223672
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 2223673 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 2223732
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 2223733 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 2223792
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 2223793 ctgggaaatgtggttgctcggttctttgttgc 2223824
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 2224464 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 2224523
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 2224524 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 2224577
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 2224679 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 2224738
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 2224739 ggatgtagt 2224747
>gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025522, whole
genome shotgun sequence
Length = 26935
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Minus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 21960 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 21901
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 21900 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 21841
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 21840 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 21781
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 21780 ctgggaaatgtggttgctcggttctttgttgc 21749
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 21109 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 21050
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 21049 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 20996
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 20894 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 20835
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 20834 ggatgtagt 20826
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 3072802 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 3072861
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 3072862 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 3072921
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 3072922 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 3072981
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 3072982 ctgggaaatgtggttgctcggttctttgttgc 3073013
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 3073653 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 3073712
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 3073713 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 3073766
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 3073868 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 3073927
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 3073928 ggatgtagt 3073936
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 22256448 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 22256507
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 22256508 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 22256567
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 22256568 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 22256627
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 22256628 ctgggaaatgtggttgctcggttctttgttgc 22256659
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 22257299 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 22257358
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 22257359 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 22257412
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 22257514 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 22257573
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 22257574 ggatgtagt 22257582
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 26052015 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 26052074
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 26052075 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 26052134
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 26052135 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 26052194
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 26052195 ctgggaaatgtggttgctcggttctttgttgc 26052226
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 26052866 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 26052925
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 26052926 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 26052979
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 26053081 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 26053140
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 26053141 ggatgtagt 26053149
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 174 bits (88), Expect = 2e-041
Identities = 181/212 (85%)
Strand = Plus / Plus
Query: 12 cttccaaaggcacatcctagcttttctctccagcaagtcttggaaatgtctgaaaggtgg 71
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 25980191 cttccaaaggtccatcctagtttctctctccagcaggtcttggaaatgtctgataggtgg 25980250
Query: 72 aaggctcgcactgtgccagaggaaccaatccatcttttcatcggcatcctctccgccaca 131
||||||||| | || |||||||||||||| || |||| || ||||| |||| || |||
Sbjct: 25980251 aaggctcgcccagtaccagaggaaccaattcaggtttttattggcataatctctgctaca 25980310
Query: 132 aaccatttcgccgagcgcatggctattaggaaaacttggatgcagtttccggctatccaa 191
|||||||| || |||||||||||||| || |||| ||||||||||| || || ||||||
Sbjct: 25980311 aaccattttgctgagcgcatggctataagaaaaagctggatgcagttccctgccatccaa 25980370
Query: 192 tcggggaatgcggttgctcggttctttgttgc 223
||| |||| |||||||||||||||||||||
Sbjct: 25980371 ctgggaaatgtggttgctcggttctttgttgc 25980402
Score = 99.6 bits (50), Expect = 1e-018
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 234 agaaaggagataaatgcagcactgaagaaggaagcagagtattttggagacatagtcatt 293
||||| ||||||||||||||||| |||| |||||||| ||||||||||| | ||||||
Sbjct: 25981042 agaaaagagataaatgcagcacttaagacagaagcagattattttggagatgttgtcatt 25981101
Query: 294 ctgccgttcatcgaccggtatgagctagtggttctgaaaacggttgcgatatgt 347
||||| || || ||||| |||||||| |||||||||||||| || || ||||||
Sbjct: 25981102 ctgccatttattgaccgatatgagctggtggttctgaaaacagtcgcaatatgt 25981155
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 356 ggtgcacaatgtcactgcagattacatcatgaagtgcgacgatgacacctttgtgcggct 415
|||||| ||||| || ||||| || |||||||| || || ||||||||||||||| ||||
Sbjct: 25981257 ggtgcaaaatgtaaccgcagagtatatcatgaaatgtgatgatgacacctttgtgaggct 25981316
Query: 416 ggatatagt 424
|||| ||||
Sbjct: 25981317 ggatgtagt 25981325
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 493,742
Number of Sequences: 438736
Number of extensions: 493742
Number of successful extensions: 8103
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8017
Number of HSP's gapped (non-prelim): 86
length of query: 424
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 404
effective length of database: 2,791,645,196
effective search space: 1127824659184
effective search space used: 1127824659184
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)