BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4f06.yg.3.1
(768 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA753820.1|CA753820 BR040003000_PLATE_B02_10_013.ab1 OA ... 100 2e-018
dbj|AK059493.1| Oryza sativa (japonica cultivar-group) cDNA... 100 2e-018
dbj|AK099412.1| Oryza sativa (japonica cultivar-group) cDNA... 100 2e-018
dbj|AP003917.3| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
gb|AACV01018724.1| Oryza sativa (japonica cultivar-group) c... 100 2e-018
ref|XM_482962.1| Oryza sativa (japonica cultivar-group), mRNA 100 2e-018
ref|XM_482963.1| Oryza sativa (japonica cultivar-group), mRNA 100 2e-018
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 100 2e-018
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
gb|AU174109.1|AU174109 AU174109 Rice green shoot Oryza sati... 86 3e-014
gb|AU097187.1|AU097187 AU097187 Rice shoot Oryza sativa (ja... 80 2e-012
gb|AU174110.1|AU174110 AU174110 Rice green shoot Oryza sati... 80 2e-012
gb|D40663.1|D40663 RICS2759A Rice shoot Oryza sativa (japon... 56 3e-005
gb|CA755380.1|CA755380 BR030019000_PLATE_D12_92_101.ab1 OA ... 52 5e-004
ref|NT_107238.1| Oryza sativa (japonica cultivar-group) 42 0.44
dbj|AP005470.3| Oryza sativa (japonica cultivar-group) geno... 42 0.44
gb|AACV01014188.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.44
>gb|CA753820.1|CA753820 BR040003000_PLATE_B02_10_013.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040003000_PLATE_B02_10_013.ab1 similar to NP_197082.1|
(NM_121583) proline-rich protein [Arabidopsis thaliana]
gi|11358712|pir|T51407 proline-rich protein -
Arabidopsis thaliana gi|9755623|emb|CAC01777.1|
(AL391144) proline-rich protein [Arabidopsis thaliana],
mRNA sequence
Length = 623
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 199 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 258
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 259 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 318
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 319 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 378
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 379 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 438
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 439 cctaccattcccgg 452
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 94 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 143
>dbj|AK059493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H04, full
insert sequence
Length = 741
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 230 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 289
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 290 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 349
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 350 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 409
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 410 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 469
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 470 cctaccattcccgg 483
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 125 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 174
>dbj|AK099412.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013004L21, full
insert sequence
Length = 659
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 153 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 212
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 213 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 272
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 273 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 332
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 333 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 392
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 393 cctaccattcccgg 406
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1666_A04
Length = 90097
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 48329 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 48388
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 48389 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 48448
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 48449 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 48508
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 48509 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 48568
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 48569 cctaccattcccgg 48582
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 48224 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 48273
>gb|AACV01018724.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018724, whole
genome shotgun sequence
Length = 16142
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 1965 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 2024
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 2025 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 2084
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 2085 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 2144
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 2145 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 2204
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 2205 cctaccattcccgg 2218
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 1860 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 1909
>ref|XM_482962.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 741
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 230 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 289
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 290 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 349
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 350 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 409
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 410 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 469
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 470 cctaccattcccgg 483
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 125 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 174
>ref|XM_482963.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 659
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 153 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 212
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 213 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 272
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 273 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 332
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 333 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 392
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 393 cctaccattcccgg 406
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 23330467 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 23330526
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 23330527 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 23330586
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 23330587 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 23330646
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 23330647 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 23330706
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 23330707 cctaccattcccgg 23330720
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 23330362 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 23330411
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 14771997 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 14772056
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 14772057 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 14772116
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 14772117 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 14772176
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 14772177 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 14772236
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 14772237 cctaccattcccgg 14772250
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 14771892 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 14771941
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 22374003 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 22374062
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 22374063 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 22374122
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 22374123 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 22374182
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 22374183 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 22374242
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 22374243 cctaccattcccgg 22374256
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 22373898 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 22373947
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 99.6 bits (50), Expect = 2e-018
Identities = 203/254 (79%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 23568554 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 23568613
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 23568614 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 23568673
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 23568674 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 23568733
Query: 443 ccaatgccctcgattcccactaccttgccatccattccaactacgattccaacaacaatc 502
||||||||||| || || || || | ||||||||||| || || || || || || |||
Sbjct: 23568734 ccaatgccctcaatcccaaccactattccatccattcccaccacaatcccgacgacgatc 23568793
Query: 503 cctaccattcccgg 516
||||||||||||||
Sbjct: 23568794 cctaccattcccgg 23568807
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 23568449 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 23568498
>gb|AU174109.1|AU174109 AU174109 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16063, mRNA sequence
Length = 438
Score = 85.7 bits (43), Expect = 3e-014
Identities = 154/191 (80%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 221 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 280
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 281 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 340
Query: 383 ccaaacccggtggttccaaccaccgtaccagctatttctgcagtcccggttaccctgcca 442
|||| |||| |||| |||||| ||||| | ||| || |||| || ||||||||||||
Sbjct: 341 ccaattccggccattccgaccaccataccaaccattcctacagttcctgttaccctgcca 400
Query: 443 ccaatgccctc 453
|||||||||||
Sbjct: 401 ccaatgccctc 411
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 116 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 165
>gb|AU097187.1|AU097187 AU097187 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2759, mRNA sequence
Length = 466
Score = 79.8 bits (40), Expect = 2e-012
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 353 ccaacagctgctggcgcaatcccatctctcccaaacccggtggttccaaccaccgtacca 412
|||||||| |||||| |||| |||||||| |||| |||| |||| |||||| |||||
Sbjct: 30 ccaacagccgctggcacaattccatctcttccaattccggccattccgaccaccatacca 89
Query: 413 gctatttctgcagtcccggttaccctgccaccaatgccctcgattcccactaccttgcca 472
| ||| || |||| || ||||||||||||||||||||||| || || || || | |||
Sbjct: 90 accattcctacagttcctgttaccctgccaccaatgccctcaatcccaaccactattcca 149
Query: 473 tccattccaactacgattccaacaacaatccctaccattcccgg 516
|||||||| || || || || || || |||||||||||||||||
Sbjct: 150 tccattcccaccacaatcccgacgacgatccctaccattcccgg 193
>gb|AU174110.1|AU174110 AU174110 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16063, mRNA sequence
Length = 449
Score = 79.8 bits (40), Expect = 2e-012
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 353 ccaacagctgctggcgcaatcccatctctcccaaacccggtggttccaaccaccgtacca 412
|||||||| |||||| |||| |||||||| |||| |||| |||| |||||| |||||
Sbjct: 7 ccaacagccgctggcacaattccatctcttccaattccggccattccgaccaccatacca 66
Query: 413 gctatttctgcagtcccggttaccctgccaccaatgccctcgattcccactaccttgcca 472
| ||| || |||| || ||||||||||||||||||||||| || || || || | |||
Sbjct: 67 accattcctacagttcctgttaccctgccaccaatgccctcaatcccaaccactattcca 126
Query: 473 tccattccaactacgattccaacaacaatccctaccattcccgg 516
|||||||| || || || || || || |||||||||||||||||
Sbjct: 127 tccattcccaccacaatcccgacgacgatccctaccattcccgg 170
>gb|D40663.1|D40663 RICS2759A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 338
Score = 56.0 bits (28), Expect = 3e-005
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 263 acgctgcctccaatgccttccattccggaggtccccaagatgacaatcccaccaatcccg 322
||||||||||| || |||||||| || | ||||||||| ||||| | || ||||| ||
Sbjct: 213 acgctgcctccgataccttccatacctgcagtccccaagctgacagtgcccccaatgcca 272
Query: 323 tccattcctatcccaaagctagccctgccaccaacagctgctggcgcaatcccatctctc 382
|| |||||||||||||| | || | || |||||||| |||||| |||| ||||||||
Sbjct: 273 tctgttcctatcccaaaggttaccattcccccaacagccgctggcacaattccatctctt 332
Query: 383 ccaa 386
||||
Sbjct: 333 ccaa 336
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 108 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 157
>gb|CA755380.1|CA755380 BR030019000_PLATE_D12_92_101.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030019000_PLATE_D12_92_101.ab1 similar to (AF098661)
unknown [Glycine max], mRNA sequence
Length = 245
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 122 gccttcaatggcagctttgcagctcgacatctcttggacacagcagctgc 171
|||||| || |||||| |||||||| ||||| |||||||||||||||||
Sbjct: 151 gccttccattgcagctacgcagctcgtcatcttttggacacagcagctgc 102
>ref|NT_107238.1| Oryza sativa (japonica cultivar-group)
Length = 1596585
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 531 cattcaccgccccatccccac 551
|||||||||||||||||||||
Sbjct: 731698 cattcaccgccccatccccac 731678
>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0043B22
Length = 158857
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 531 cattcaccgccccatccccac 551
|||||||||||||||||||||
Sbjct: 52300 cattcaccgccccatccccac 52280
>gb|AACV01014188.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014188, whole
genome shotgun sequence
Length = 40103
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 531 cattcaccgccccatccccac 551
|||||||||||||||||||||
Sbjct: 35296 cattcaccgccccatccccac 35316
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053
genomic scaffold, whole genome shotgun sequence
Length = 12033173
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 531 cattcaccgccccatccccac 551
|||||||||||||||||||||
Sbjct: 594278 cattcaccgccccatccccac 594258
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 531 cattcaccgccccatccccac 551
|||||||||||||||||||||
Sbjct: 18293015 cattcaccgccccatccccac 18292995
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 531 cattcaccgccccatccccac 551
|||||||||||||||||||||
Sbjct: 19148815 cattcaccgccccatccccac 19148795
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 941,597
Number of Sequences: 438736
Number of extensions: 941597
Number of successful extensions: 4381
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4259
Number of HSP's gapped (non-prelim): 97
length of query: 768
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 747
effective length of database: 2,791,206,460
effective search space: 2085031225620
effective search space used: 2085031225620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)