BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR1e04.yg.2.1
(405 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA... 283 4e-074
emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC O... 283 4e-074
emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC O... 283 4e-074
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 283 4e-074
gb|AACV01022227.1| Oryza sativa (japonica cultivar-group) c... 283 4e-074
gb|AACV01023843.1| Oryza sativa (japonica cultivar-group) c... 283 4e-074
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 283 4e-074
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 283 4e-074
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 283 4e-074
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 283 4e-074
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 283 4e-074
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 283 4e-074
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 283 4e-074
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 283 4e-074
dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA... 123 8e-026
dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA... 123 8e-026
gb|AACV01002605.1| Oryza sativa (japonica cultivar-group) c... 123 8e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 123 8e-026
ref|NM_190416.1| Oryza sativa (japonica cultivar-group), p... 123 8e-026
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 123 8e-026
dbj|AP003734.3| Oryza sativa (japonica cultivar-group) geno... 123 8e-026
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 123 8e-026
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 123 8e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 123 8e-026
gb|CZ553235.1|CZ553235 M0007738 AS_TRIM_TDNA_B1 Oryza sativ... 60 1e-006
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|AACV01014990.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
ref|XM_476345.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-006
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|CB643630.1|CB643630 OSJNEb04G19.r OSJNEb Oryza sativa (j... 54 6e-005
gb|CB655042.1|CB655042 OSJNEc08B07.f OSJNEc Oryza sativa (j... 54 6e-005
gb|CB664069.1|CB664069 OSJNEd09J11.r OSJNEd Oryza sativa (j... 54 6e-005
gb|CB682582.1|CB682582 OSJNEf10B11.f OSJNEf Oryza sativa (j... 54 6e-005
dbj|AK061816.1| Oryza sativa (japonica cultivar-group) cDNA... 54 6e-005
dbj|AK065154.1| Oryza sativa (japonica cultivar-group) cDNA... 54 6e-005
dbj|AK109431.2| Oryza sativa (japonica cultivar-group) cDNA... 54 6e-005
gb|AACV01002688.1| Oryza sativa (japonica cultivar-group) c... 54 6e-005
ref|XM_463491.1| Oryza sativa (japonica cultivar-group), p... 54 6e-005
dbj|AP003242.3| Oryza sativa (japonica cultivar-group) geno... 54 6e-005
dbj|AP004072.2| Oryza sativa (japonica cultivar-group) geno... 54 6e-005
gb|D39461.1|D39461 RICS0804A Rice shoot Oryza sativa (japon... 48 0.004
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 48 0.004
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC O... 46 0.014
emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC O... 46 0.014
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 46 0.014
gb|AACV01011222.1| Oryza sativa (japonica cultivar-group) c... 46 0.014
gb|CH401192.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.014
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.014
gb|AC105770.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.22
gb|AACV01012344.1| Oryza sativa (japonica cultivar-group) c... 42 0.22
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 42 0.22
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.22
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.22
>dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F06, full
insert sequence
Length = 1973
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1526 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 1585
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 1586 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 1645
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 1646 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 1705
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 1706 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 1765
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 1766 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 1805
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 141089
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 109604 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 109545
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 109544 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 109485
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 109484 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 109425
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 109424 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 109365
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 109364 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 109325
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 164143
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 102776 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 102835
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||||||| || ||||| | || |||||| |||| |||||||| ||||||||||||
Sbjct: 102836 ttcgacgccggcgccgacacgggcaagttcaacgtggaggacccgccgatgaggaacacg 102895
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 102896 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 102955
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 102956 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 103015
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 103016 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 103055
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 437168 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 437227
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 437228 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 437287
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 437288 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 437347
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 437348 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 437407
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 437408 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 437447
>gb|AACV01022227.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022227, whole
genome shotgun sequence
Length = 20909
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 9634 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 9575
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||||||| || ||||| | || |||||| |||| |||||||| ||||||||||||
Sbjct: 9574 ttcgacgccggcgccgacacgggcaagttcaacgtggaggacccgccgatgaggaacacg 9515
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 9514 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 9455
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 9454 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 9395
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 9394 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 9355
>gb|AACV01023843.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023843, whole
genome shotgun sequence
Length = 31145
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 20548 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 20489
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 20488 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 20429
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 20428 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 20369
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 20368 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 20309
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 20308 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 20269
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109
genomic scaffold, whole genome shotgun sequence
Length = 5753019
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 433043 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 433102
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 433103 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 433162
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 433163 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 433222
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 433223 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 433282
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 433283 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 433322
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094
genomic scaffold, whole genome shotgun sequence
Length = 4775249
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 78418 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 78477
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||||||| || ||||| | || |||||| |||| |||||||| ||||||||||||
Sbjct: 78478 ttcgacgccggcgccgacacgggcaagttcaacgtggaggacccgccgatgaggaacacg 78537
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 78538 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 78597
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 78598 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 78657
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 78658 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 78697
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome
shotgun sequence
Length = 23730396
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 433043 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 433102
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 433103 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 433162
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 433163 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 433222
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 433223 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 433282
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 433283 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 433322
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome
shotgun sequence
Length = 22593549
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 380710 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 380769
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||||||| || ||||| | || |||||| |||| |||||||| ||||||||||||
Sbjct: 380770 ttcgacgccggcgccgacacgggcaagttcaacgtggaggacccgccgatgaggaacacg 380829
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 380830 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 380889
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 380890 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 380949
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 380950 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 380989
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
complete sequence
Length = 28386948
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 395458 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 395517
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||||||| || ||||| | || |||||| |||| |||||||| ||||||||||||
Sbjct: 395518 ttcgacgccggcgccgacacgggcaagttcaacgtggaggacccgccgatgaggaacacg 395577
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 395578 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 395637
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 395638 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 395697
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 395698 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 395737
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
complete sequence
Length = 27566993
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 437168 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 437227
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 437228 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 437287
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 437288 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 437347
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 437348 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 437407
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 437408 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 437447
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaact 61
|||||| || |||||||| |||| | |||||| | ||||||| |||||||||||||||
Sbjct: 8961950 ccacccgatgcacctccatggcttcaacttcttcgtcctcgcacagggcttcggcaact 8962008
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 395458 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 395517
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||||||| || ||||| | || |||||| |||| |||||||| ||||||||||||
Sbjct: 395518 ttcgacgccggcgccgacacgggcaagttcaacgtggaggacccgccgatgaggaacacg 395577
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 395578 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 395637
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 395638 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 395697
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 395698 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 395737
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 283 bits (143), Expect = 4e-074
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 437168 aaccaccccatccacctccacggctacgacttctacatcctcgccgaggggttgggcaac 437227
Query: 61 ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
||||| ||| || ||||| |||| ||||||||||| || ||||| ||||||||||||
Sbjct: 437228 ttcgatgccggcgccgacacggccaagttcaacatggaggatccgccgatgaggaacacg 437287
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
|||||||||||||| ||||| |||||||| || || ||||||||||| || || ||||
Sbjct: 437288 gtgggcgtgccggtgaacgggtgggcggtgatacggttcgtggcggacaacccgggggtg 437347
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 437348 tggctgatgcactgccatctcgacgtgcacatcacctggggcctcgccatggccttcctc 437407
Query: 241 gtggaggacggcgtcggggagatgcagtcactggaggcgc 280
|| || ||||||||||| ||| ||||||| ||||||||||
Sbjct: 437408 gtcgacgacggcgtcggcgagctgcagtcgctggaggcgc 437447
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaact 61
|||||| || |||||||| |||| | |||||| | ||||||| |||||||||||||||
Sbjct: 8961833 ccacccgatgcacctccatggcttcaacttcttcgtcctcgcacagggcttcggcaact 8961891
>dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072C02, full
insert sequence
Length = 2023
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 1570
Query: 61 ttcgac 66
||||||
Sbjct: 1571 ttcgac 1576
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 1646 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 1705
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 1706 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 1758
>dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D07, full
insert sequence
Length = 1678
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 1225
Query: 61 ttcgac 66
||||||
Sbjct: 1226 ttcgac 1231
Score = 81.8 bits (41), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 1301 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 1360
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||| ||||||||||||||||
Sbjct: 1361 catcttgacgtgcacataacctggggcctggcaatgacgttcctggtggagga 1413
>gb|AACV01002605.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002605, whole
genome shotgun sequence
Length = 51705
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6925 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 6866
Query: 61 ttcgac 66
||||||
Sbjct: 6865 ttcgac 6860
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 6790 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 6731
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 6730 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 6678
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35478715 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 35478774
Query: 61 ttcgac 66
||||||
Sbjct: 35478775 ttcgac 35478780
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 35478850 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 35478909
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 35478910 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 35478962
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 36700885 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 36700944
Query: 61 ttc 63
|||
Sbjct: 36700945 ttc 36700947
>ref|NM_190416.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1704
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 1458
Query: 61 ttcgac 66
||||||
Sbjct: 1459 ttcgac 1464
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 1534 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 1593
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 1594 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 1646
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926098 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 9926157
Query: 61 ttcgac 66
||||||
Sbjct: 9926158 ttcgac 9926163
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 9926233 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 9926292
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 9926293 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 9926345
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 11148268 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 11148327
Query: 61 ttc 63
|||
Sbjct: 11148328 ttc 11148330
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088C09
Length = 154084
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21994 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 22053
Query: 61 ttcgac 66
||||||
Sbjct: 22054 ttcgac 22059
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 22129 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 22188
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 22189 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 22241
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9682828 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 9682887
Query: 61 ttcgac 66
||||||
Sbjct: 9682888 ttcgac 9682893
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 9682963 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 9683022
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 9683023 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 9683075
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 10873728 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 10873787
Query: 61 ttc 63
|||
Sbjct: 10873788 ttc 10873790
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34884549 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 34884608
Query: 61 ttcgac 66
||||||
Sbjct: 34884609 ttcgac 34884614
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 34884684 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 34884743
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 34884744 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 34884796
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 36075449 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 36075508
Query: 61 ttc 63
|||
Sbjct: 36075509 ttc 36075511
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 123 bits (62), Expect = 8e-026
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35398045 aaccaccccatccacatccacggctacgacttctacatcctcgccgagggcttcggcaac 35398104
Query: 61 ttcgac 66
||||||
Sbjct: 35398105 ttcgac 35398110
Score = 89.7 bits (45), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||||||||| |||||||| ||||| || || || || |||| ||||||||| |||
Sbjct: 35398180 aacggctgggccgtcatccggttcgtcgccgacaaccctggggtgtggctcatgcattgc 35398239
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggtggagga 248
|| || ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 35398240 catcttgacgtgcacataacctggggcctggcaatggcgttcctggtggagga 35398292
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 36620215 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 36620274
Query: 61 ttc 63
|||
Sbjct: 36620275 ttc 36620277
>gb|CZ553235.1|CZ553235 M0007738 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0007738, DNA sequence
Length = 306
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 117 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 58
Query: 198 cctgga 203
||||||
Sbjct: 57 cctgga 52
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 57287 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 57228
Query: 198 cctgga 203
||||||
Sbjct: 57227 cctgga 57222
>gb|AACV01014990.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014990, whole
genome shotgun sequence
Length = 15624
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 5833 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 5774
Query: 198 cctgga 203
||||||
Sbjct: 5773 cctgga 5768
>ref|XM_476345.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1752
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 1584 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 1643
Query: 198 cctgga 203
||||||
Sbjct: 1644 cctgga 1649
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 57285 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 57226
Query: 198 cctgga 203
||||||
Sbjct: 57225 cctgga 57220
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 49366 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 49307
Query: 198 cctgga 203
||||||
Sbjct: 49306 cctgga 49301
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome
shotgun sequence
Length = 28626509
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 49366 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 49307
Query: 198 cctgga 203
||||||
Sbjct: 49306 cctgga 49301
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 60.0 bits (30), Expect = 1e-006
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 138 cggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgcca 197
|||||||||||||||||| ||| |||||| || ||||| | |||||||||||||||
Sbjct: 57988 cggctgggcggtcatccggttcacggcggacaaccccggcgtgtggctcatgcactgcca 57929
Query: 198 cctgga 203
||||||
Sbjct: 57928 cctgga 57923
>gb|CB643630.1|CB643630 OSJNEb04G19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04G19 3', mRNA sequence
Length = 815
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 591 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 532
Query: 61 ttc 63
|||
Sbjct: 531 ttc 529
>gb|CB655042.1|CB655042 OSJNEc08B07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08B07 5', mRNA sequence
Length = 751
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 533 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 474
Query: 61 ttc 63
|||
Sbjct: 473 ttc 471
>gb|CB664069.1|CB664069 OSJNEd09J11.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09J11 3', mRNA sequence
Length = 690
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 589 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 530
Query: 61 ttc 63
|||
Sbjct: 529 ttc 527
>gb|CB682582.1|CB682582 OSJNEf10B11.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10B11 5', mRNA sequence
Length = 793
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 469 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 528
Query: 61 ttc 63
|||
Sbjct: 529 ttc 531
>dbj|AK061816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B06, full
insert sequence
Length = 1978
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 1424 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 1483
Query: 61 ttc 63
|||
Sbjct: 1484 ttc 1486
>dbj|AK065154.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B17, full
insert sequence
Length = 1996
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 1445 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 1504
Query: 61 ttc 63
|||
Sbjct: 1505 ttc 1507
>dbj|AK109431.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A04, full
insert sequence
Length = 2032
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 1446 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 1505
Query: 61 ttc 63
|||
Sbjct: 1506 ttc 1508
>gb|AACV01002688.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002688, whole
genome shotgun sequence
Length = 55981
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 42715 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 42656
Query: 61 ttc 63
|||
Sbjct: 42655 ttc 42653
>ref|XM_463491.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1563
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 1261 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 1320
Query: 61 ttc 63
|||
Sbjct: 1321 ttc 1323
>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0414E03
Length = 139598
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 133590 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 133649
Query: 61 ttc 63
|||
Sbjct: 133650 ttc 133652
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0529H11
Length = 165969
Score = 54.0 bits (27), Expect = 6e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
|||||||| |||||||||||||||| | |||||| | | || ||| ||||| ||||||||
Sbjct: 93481 aaccacccgatccacctccacggcttcaacttcttcgtgctggcccagggcctcggcaac 93540
Query: 61 ttc 63
|||
Sbjct: 93541 ttc 93543
>gb|D39461.1|D39461 RICS0804A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 251
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 81 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 140
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0039F10, complete sequence
Length = 139714
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 74072 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 74131
Score = 46.1 bits (23), Expect = 0.014
Identities = 121/155 (78%)
Strand = Plus / Plus
Query: 99 cgacccgcccatgaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgctt 158
||||||||||| ||||||| | |||||||| ||| ||| ||||| ||| | || ||
Sbjct: 74164 cgacccgcccagccggaacaccatcggcgtgcccgtcggcgggtgggccgtcgtgcggtt 74223
Query: 159 cgtggcggataatcccggggnnnngctcatgcactgccacctggacgtgcacatcacctg 218
||||||||| || ||||||| ||| ||||||||||| | |||| ||| ||||| |
Sbjct: 74224 cgtggcggacaaccccggggtgtggctggtgcactgccacatcgacgcgcatctcaccgg 74283
Query: 219 gggtctcgccatggcgttcctggtggaggacggcg 253
|| || | ||||||| | ||||||||||||||||
Sbjct: 74284 cgggctgggcatggcgctgctggtggaggacggcg 74318
>gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006417, whole
genome shotgun sequence
Length = 7888
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 5801 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 5742
Score = 46.1 bits (23), Expect = 0.014
Identities = 121/155 (78%)
Strand = Plus / Minus
Query: 99 cgacccgcccatgaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgctt 158
||||||||||| ||||||| | |||||||| ||| ||| ||||| ||| | || ||
Sbjct: 5709 cgacccgcccagccggaacaccatcggcgtgcccgtcggcgggtgggccgtcgtgcggtt 5650
Query: 159 cgtggcggataatcccggggnnnngctcatgcactgccacctggacgtgcacatcacctg 218
||||||||| || ||||||| ||| ||||||||||| | |||| ||| ||||| |
Sbjct: 5649 cgtggcggacaaccccggggtgtggctggtgcactgccacatcgacgcgcatctcaccgg 5590
Query: 219 gggtctcgccatggcgttcctggtggaggacggcg 253
|| || | ||||||| | ||||||||||||||||
Sbjct: 5589 cgggctgggcatggcgctgctggtggaggacggcg 5555
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 1761436 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 1761495
Score = 46.1 bits (23), Expect = 0.014
Identities = 121/155 (78%)
Strand = Plus / Plus
Query: 99 cgacccgcccatgaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgctt 158
||||||||||| ||||||| | |||||||| ||| ||| ||||| ||| | || ||
Sbjct: 1761528 cgacccgcccagccggaacaccatcggcgtgcccgtcggcgggtgggccgtcgtgcggtt 1761587
Query: 159 cgtggcggataatcccggggnnnngctcatgcactgccacctggacgtgcacatcacctg 218
||||||||| || ||||||| ||| ||||||||||| | |||| ||| ||||| |
Sbjct: 1761588 cgtggcggacaaccccggggtgtggctggtgcactgccacatcgacgcgcatctcaccgg 1761647
Query: 219 gggtctcgccatggcgttcctggtggaggacggcg 253
|| || | ||||||| | ||||||||||||||||
Sbjct: 1761648 cgggctgggcatggcgctgctggtggaggacggcg 1761682
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 10499722 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 10499781
Score = 46.1 bits (23), Expect = 0.014
Identities = 121/155 (78%)
Strand = Plus / Plus
Query: 99 cgacccgcccatgaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgctt 158
||||||||||| ||||||| | |||||||| ||| ||| ||||| ||| | || ||
Sbjct: 10499814 cgacccgcccagccggaacaccatcggcgtgcccgtcggcgggtgggccgtcgtgcggtt 10499873
Query: 159 cgtggcggataatcccggggnnnngctcatgcactgccacctggacgtgcacatcacctg 218
||||||||| || ||||||| ||| ||||||||||| | |||| ||| ||||| |
Sbjct: 10499874 cgtggcggacaaccccggggtgtggctggtgcactgccacatcgacgcgcatctcaccgg 10499933
Query: 219 gggtctcgccatggcgttcctggtggaggacggcg 253
|| || | ||||||| | ||||||||||||||||
Sbjct: 10499934 cgggctgggcatggcgctgctggtggaggacggcg 10499968
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 10692084 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 10692143
Score = 46.1 bits (23), Expect = 0.014
Identities = 121/155 (78%)
Strand = Plus / Plus
Query: 99 cgacccgcccatgaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgctt 158
||||||||||| ||||||| | |||||||| ||| ||| ||||| ||| | || ||
Sbjct: 10692176 cgacccgcccagccggaacaccatcggcgtgcccgtcggcgggtgggccgtcgtgcggtt 10692235
Query: 159 cgtggcggataatcccggggnnnngctcatgcactgccacctggacgtgcacatcacctg 218
||||||||| || ||||||| ||| ||||||||||| | |||| ||| ||||| |
Sbjct: 10692236 cgtggcggacaaccccggggtgtggctggtgcactgccacatcgacgcgcatctcaccgg 10692295
Query: 219 gggtctcgccatggcgttcctggtggaggacggcg 253
|| || | ||||||| | ||||||||||||||||
Sbjct: 10692296 cgggctgggcatggcgctgctggtggaggacggcg 10692330
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 7 cccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaacttcgac 66
||||| ||| ||||||||||| |||||||| | |||||| ||| |||||||||| ||||
Sbjct: 10415620 cccatgcacatccacggctaccacttctacgtgctcgccacggggttcggcaactacgac 10415679
Score = 46.1 bits (23), Expect = 0.014
Identities = 121/155 (78%)
Strand = Plus / Plus
Query: 99 cgacccgcccatgaggaacacggtgggcgtgccggtcaacggctgggcggtcatccgctt 158
||||||||||| ||||||| | |||||||| ||| ||| ||||| ||| | || ||
Sbjct: 10415712 cgacccgcccagccggaacaccatcggcgtgcccgtcggcgggtgggccgtcgtgcggtt 10415771
Query: 159 cgtggcggataatcccggggnnnngctcatgcactgccacctggacgtgcacatcacctg 218
||||||||| || ||||||| ||| ||||||||||| | |||| ||| ||||| |
Sbjct: 10415772 cgtggcggacaaccccggggtgtggctggtgcactgccacatcgacgcgcatctcaccgg 10415831
Query: 219 gggtctcgccatggcgttcctggtggaggacggcg 253
|| || | ||||||| | ||||||||||||||||
Sbjct: 10415832 cgggctgggcatggcgctgctggtggaggacggcg 10415866
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 372,540
Number of Sequences: 438736
Number of extensions: 372540
Number of successful extensions: 9003
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8417
Number of HSP's gapped (non-prelim): 592
length of query: 405
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 385
effective length of database: 2,791,645,196
effective search space: 1074783400460
effective search space used: 1074783400460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)