BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN24c09.yg.2.1
(425 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA... 260 5e-067
dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA... 260 5e-067
dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA... 260 5e-067
gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 ... 260 5e-067
gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) c... 260 5e-067
ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 260 5e-067
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 260 5e-067
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 260 5e-067
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 260 5e-067
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 260 5e-067
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 260 5e-067
dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA... 226 8e-057
dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA... 226 8e-057
dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA... 226 8e-057
dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA... 226 8e-057
dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA... 226 8e-057
dbj|AP004298.4| Oryza sativa (japonica cultivar-group) geno... 226 8e-057
dbj|AP005248.4| Oryza sativa (japonica cultivar-group) geno... 226 8e-057
gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) c... 226 8e-057
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 226 8e-057
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 226 8e-057
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 226 8e-057
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 226 8e-057
gb|CB671503.1|CB671503 OSJNEe05B24.f OSJNEe Oryza sativa (j... 218 2e-054
gb|C72423.1|C72423 C72423 Rice panicle at flowering stage O... 194 3e-047
dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chro... 186 6e-045
dbj|AP005824.4| Oryza sativa (japonica cultivar-group) geno... 186 6e-045
gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) c... 186 6e-045
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 186 6e-045
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 186 6e-045
gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing t... 180 4e-043
gb|D24964.1|D24964 RICR2854A Rice root Oryza sativa (japoni... 180 4e-043
dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA... 180 4e-043
dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA... 180 4e-043
ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA 180 4e-043
gb|AU032362.1|AU032362 AU032362 Rice root Oryza sativa (jap... 176 6e-042
gb|AU065353.1|AU065353 AU065353 Rice root Oryza sativa (jap... 167 6e-039
gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germinati... 153 9e-035
gb|CB645001.1|CB645001 OSJNEb06H07.f OSJNEb Oryza sativa (j... 125 2e-026
gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germinati... 121 3e-025
gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing... 117 5e-024
gb|CA999072.1|CA999072 S234M_G06 Rice cold stress germinati... 84 7e-014
gb|CF277609.1|CF277609 14ETL--03-D13.b1 Rice etiolated leaf... 84 7e-014
dbj|AK061688.1| Oryza sativa (japonica cultivar-group) cDNA... 84 7e-014
dbj|AK062007.1| Oryza sativa (japonica cultivar-group) cDNA... 84 7e-014
dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA... 84 7e-014
dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA... 84 7e-014
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 84 7e-014
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 84 7e-014
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 84 7e-014
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 84 7e-014
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 84 7e-014
gb|AACV01015403.1| Oryza sativa (japonica cultivar-group) c... 84 7e-014
ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA 84 7e-014
ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA 84 7e-014
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 84 7e-014
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 84 7e-014
gb|AU032126.1|AU032126 AU032126 Rice root Oryza sativa (jap... 68 4e-009
gb|D24860.1|D24860 RICR2666A Rice root Oryza sativa (japoni... 68 4e-009
gb|D24862.1|D24862 RICR2668A Rice root Oryza sativa (japoni... 68 4e-009
gb|AC132494.1| Oryza sativa (japonica cultivar-group) chrom... 68 4e-009
dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK060838.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA... 68 4e-009
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 68 4e-009
gb|AC135426.2| Oryza sativa (japonica cultivar-group) chrom... 68 4e-009
gb|AACV01011005.1| Oryza sativa (japonica cultivar-group) c... 68 4e-009
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 68 4e-009
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 68 4e-009
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 68 4e-009
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 68 4e-009
gb|D47850.1|D47850 RICS13573A Rice green shoot Oryza sativa... 58 4e-006
gb|CB643325.1|CB643325 OSJNEb03P11.r OSJNEb Oryza sativa (j... 56 2e-005
gb|CB661448.1|CB661448 OSJNEd04F08.r OSJNEd Oryza sativa (j... 56 2e-005
gb|CB675258.1|CB675258 OSJNEe10O07.r OSJNEe Oryza sativa (j... 56 2e-005
gb|CF277078.1|CF277078 14ETL--02-H16.b1 Rice etiolated leaf... 56 2e-005
dbj|AK072259.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK121170.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06... 56 2e-005
dbj|AP005420.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP005579.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AACV01020011.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
gb|AACV01021752.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NM_196933.1| Oryza sativa (japonica cultivar-group) put... 56 2e-005
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 56 2e-005
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CF311164.1|CF311164 ABF--06-E14.b1 ABF3-overexpressing t... 54 6e-005
gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing t... 54 6e-005
gb|AU031954.1|AU031954 AU031954 Rice root Oryza sativa (jap... 52 2e-004
gb|AU174803.1|AU174803 AU174803 Rice cDNA from leaf Oryza s... 48 0.004
dbj|AK100374.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
dbj|AK100475.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
dbj|AK105078.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group)... 48 0.004
gb|AACV01002349.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 48 0.004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.004
ref|NM_191233.1| Oryza sativa (japonica cultivar-group), p... 48 0.004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.004
ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA 48 0.004
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 48 0.004
dbj|AP003237.2| Oryza sativa (japonica cultivar-group) geno... 48 0.004
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
gb|AC137745.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.060
gb|AACV01023106.1| Oryza sativa (japonica cultivar-group) c... 44 0.060
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.060
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.060
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.060
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.060
gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nippo... 42 0.24
gb|AACV01006065.1| Oryza sativa (japonica cultivar-group) c... 42 0.24
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.24
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.24
>dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H07, full
insert sequence
Length = 1180
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 25 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 84
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 85 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 144
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 145 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 204
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 205 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 263
>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full
insert sequence
Length = 4029
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 2877 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 2936
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 2937 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 2996
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 2997 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 3056
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3057 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 3115
Score = 63.9 bits (32), Expect = 6e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 2817 acattgcctgccatctgtttgctgacaggaaaatttatcactccagag 2864
>dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029A22, full
insert sequence
Length = 2325
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 1502 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 1561
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1562 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 1621
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 1622 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 1681
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1682 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 1740
Score = 63.9 bits (32), Expect = 6e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 1442 acattgcctgccatctgtttgctgacaggaaaatttatcactccagag 1489
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
sequence
Length = 171376
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Minus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 137250 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 137191
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 137190 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 137131
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 137130 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 137071
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 137070 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 137012
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 137405 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 137348
>gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008229, whole
genome shotgun sequence
Length = 36790
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 7726 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 7785
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 7786 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 7845
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 7846 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 7905
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 7906 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 7964
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 7571 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 7628
>ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3905
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 2707 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 2766
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 2767 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 2826
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 2827 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 2886
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 2887 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 2945
Score = 63.9 bits (32), Expect = 6e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 2647 acattgcctgccatctgtttgctgacaggaaaatttatcactccagag 2694
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 179933 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 179992
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 179993 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 180052
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 180053 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 180112
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 180113 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 180171
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 179778 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 179835
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 8598850 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 8598909
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 8598910 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 8598969
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 8598970 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 8599029
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 8599030 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 8599088
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 7194664 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 7194605
Query: 283 ggaggt 288
||||||
Sbjct: 7194604 ggaggt 7194599
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 8598695 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 8598752
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 35865013 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 35865072
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 35865073 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 35865132
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 35865133 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 35865192
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 35865193 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 35865251
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 34460827 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 34460768
Query: 283 ggaggt 288
||||||
Sbjct: 34460767 ggaggt 34460762
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 35864858 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 35864915
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 aaagcttaatcaactatagttttgt 75
||||||||| |||||||||||||||
Sbjct: 5485249 aaagcttaaacaactatagttttgt 5485273
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 34968302 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 34968361
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 34968362 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 34968421
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 34968422 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 34968481
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 34968482 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 34968540
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 33567900 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 33567841
Query: 283 ggaggt 288
||||||
Sbjct: 33567840 ggaggt 33567835
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 34968147 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 34968204
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 aaagcttaatcaactatagttttgt 75
||||||||| |||||||||||||||
Sbjct: 5272253 aaagcttaaacaactatagttttgt 5272277
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 260 bits (131), Expect = 5e-067
Identities = 210/239 (87%)
Strand = Plus / Plus
Query: 166 gccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctnnnaatg 225
|||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct: 34878230 gccagcctttggttcatgtcactatttatctgcatttttgctacgggcattctggaaatg 34878289
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 34878290 agatggagtggtgtaggcatcgatgattggtggaggaacgagcagttttgggtcattgga 34878349
Query: 286 ggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgtt 345
||||| || || || ||||| |||||||| || ||||||||| ||||||||||||| |
Sbjct: 34878350 ggtgtctcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatc 34878409
Query: 346 gatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 34878410 gatacaagcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgta 34878468
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 33477390 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 33477331
Query: 283 ggaggt 288
||||||
Sbjct: 33477330 ggaggt 33477325
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagctta 58
|||||||||||||||||||| |||| || |||||||||||||||||||||| |||||
Sbjct: 34878075 acattgcctgccatctgtttgctgacaggaaaatttatcactccagaggtaacgctta 34878132
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 aaagcttaatcaactatagttttgt 75
||||||||| |||||||||||||||
Sbjct: 5273038 aaagcttaaacaactatagttttgt 5273062
>dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H11, full
insert sequence
Length = 1827
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 659 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 718
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 719 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 778
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 779 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 838
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 839 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 898
Query: 400 ct 401
||
Sbjct: 899 ct 900
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 605 acattgccagccatctgtttgctaactgggaagtttatcactccagag 652
>dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F14, full
insert sequence
Length = 3221
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2053 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 2112
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 2113 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 2172
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 2173 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 2232
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 2233 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 2292
Query: 400 ct 401
||
Sbjct: 2293 ct 2294
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 1999 acattgccagccatctgtttgctaactgggaagtttatcactccagag 2046
>dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013085H01, full
insert sequence
Length = 1867
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 764 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 823
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 824 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 883
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 884 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 943
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 944 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 1003
Query: 400 ct 401
||
Sbjct: 1004 ct 1005
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 710 acattgccagccatctgtttgctaactgggaagtttatcactccagag 757
>dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D15, full
insert sequence
Length = 4208
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3041 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 3100
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 3101 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 3160
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 3161 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 3220
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 3221 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 3280
Query: 400 ct 401
||
Sbjct: 3281 ct 3282
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 2987 acattgccagccatctgtttgctaactgggaagtttatcactccagag 3034
>dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086F23, full
insert sequence
Length = 4127
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2959 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 3018
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 3019 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 3078
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 3079 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 3138
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 3139 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 3198
Query: 400 ct 401
||
Sbjct: 3199 ct 3200
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 2905 acattgccagccatctgtttgctaactgggaagtttatcactccagag 2952
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409D09
Length = 150485
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 40132 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 40073
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 40072 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 40013
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 40012 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 39953
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 39952 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 39893
Query: 400 ct 401
||
Sbjct: 39892 ct 39891
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 40272 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 40213
Query: 61 caact 65
|||||
Sbjct: 40212 caact 40208
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0084P08
Length = 158656
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 156759 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 156700
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 156699 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 156640
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 156639 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 156580
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 156579 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 156520
Query: 400 ct 401
||
Sbjct: 156519 ct 156518
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 156899 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 156840
Query: 61 caact 65
|||||
Sbjct: 156839 caact 156835
>gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015914, whole
genome shotgun sequence
Length = 29977
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12712 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 12653
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 12652 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 12593
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 12592 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 12533
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 12532 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 12473
Query: 400 ct 401
||
Sbjct: 12472 ct 12471
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 12852 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 12793
Query: 61 caact 65
|||||
Sbjct: 12792 caact 12788
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1469803 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 1469744
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 1469743 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 1469684
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 1469683 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 1469624
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 1469623 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 1469564
Query: 400 ct 401
||
Sbjct: 1469563 ct 1469562
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 1469943 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 1469884
Query: 61 caact 65
|||||
Sbjct: 1469883 caact 1469879
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060 genomic
scaffold, whole genome shotgun sequence
Length = 1552265
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1442531 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 1442472
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 1442471 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 1442412
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 1442411 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 1442352
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 1442351 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 1442292
Query: 400 ct 401
||
Sbjct: 1442291 ct 1442290
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 1442671 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 1442612
Query: 61 caact 65
|||||
Sbjct: 1442611 caact 1442607
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12876008 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 12875949
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 12875948 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 12875889
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 12875888 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 12875829
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 12875828 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 12875769
Query: 400 ct 401
||
Sbjct: 12875768 ct 12875767
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 8446802 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 8446861
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 8446862 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 8446921
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 8446922 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 8446981
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 8446982 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 8447041
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 8447042 gagttctcagagct 8447055
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 5797006 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 5796947
Query: 283 ggaggt 288
||||||
Sbjct: 5796946 ggaggt 5796941
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 12876148 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 12876089
Query: 61 caact 65
|||||
Sbjct: 12876088 caact 12876084
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 8446682 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 8446730
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 226 bits (114), Expect = 8e-057
Identities = 208/242 (85%)
Strand = Plus / Minus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13689140 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 13689081
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 13689080 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 13689021
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 13689020 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 13688961
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| || |||||||||
Sbjct: 13688960 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 13688901
Query: 400 ct 401
||
Sbjct: 13688900 ct 13688899
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 8532805 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 8532864
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 8532865 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 8532924
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 8532925 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 8532984
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 8532985 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 8533044
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 8533045 gagttctcagagct 8533058
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 5885722 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 5885663
Query: 283 ggaggt 288
||||||
Sbjct: 5885662 ggaggt 5885657
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagaggtaaagcttaat 60
|||||||| ||||||||||| | || ||||| |||||||||||||||||||| |||| |
Sbjct: 13689280 acattgccagccatctgtttgctaactgggaagtttatcactccagaggtaaatcttatt 13689221
Query: 61 caact 65
|||||
Sbjct: 13689220 caact 13689216
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 8532685 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 8532733
>gb|CB671503.1|CB671503 OSJNEe05B24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05B24 5', mRNA sequence
Length = 783
Score = 218 bits (110), Expect = 2e-054
Identities = 207/242 (85%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 512 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 571
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 572 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 631
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 632 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 691
Query: 340 ggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagag 399
||| | ||||| || | |||| ||||||||| ||||| || ||||| | |||||||||
Sbjct: 692 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaaaagttctcagag 751
Query: 400 ct 401
||
Sbjct: 752 ct 753
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 458 acattgccagccatctgtttgctaactgggaagtttatcactccagag 505
>gb|C72423.1|C72423 C72423 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1590_1A, mRNA sequence
Length = 440
Score = 194 bits (98), Expect = 3e-047
Identities = 160/183 (87%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 126 aatgtngccagtctctggttcatgtcactttttatctgcatttttgctacnggcatcctg 185
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 186 gaaatgagatggagtggtgttggcattgatgattggtggagaaatgaacaattttgggtc 245
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 246 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 305
Query: 340 ggt 342
|||
Sbjct: 306 ggt 308
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 72 acattgccagccatctgtttgctaactgggaagtttatcactccagag 119
>dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1134_A07,
*** SEQUENCING IN PROGRESS ***
Length = 146543
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 81814 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 81873
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 81874 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 81933
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 81934 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 81993
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 81994 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 82053
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 82054 gagttctcagagct 82067
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 81694 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 81742
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0669H03
Length = 167878
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 65273 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 65332
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 65333 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 65392
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 65393 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 65452
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 65453 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 65512
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 65513 gagttctcagagct 65526
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 65153 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 65201
>gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015596, whole
genome shotgun sequence
Length = 13414
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Minus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 5068 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 5009
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 5008 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 4949
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 4948 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 4889
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 4888 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 4829
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 4828 gagttctcagagct 4815
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 5188 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 5140
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 8488877 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 8488936
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 8488937 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 8488996
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 8488997 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 8489056
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 8489057 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 8489116
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 8489117 gagttctcagagct 8489130
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 5841794 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 5841735
Query: 283 ggaggt 288
||||||
Sbjct: 5841734 ggaggt 5841729
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 8488757 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 8488805
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 186 bits (94), Expect = 6e-045
Identities = 212/254 (83%)
Strand = Plus / Plus
Query: 148 ctgcagctgaacaatgttgccagcctgtggttcatgtcactttttatctgcatttttgct 207
|||||||| | ||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 2393177 ctgcagctcaccaatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtc 2393236
Query: 208 acaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtggaggaatgag 267
|| ||||||| |||||||||||||||||| | || ||||| |||||||||||||||
Sbjct: 2393237 actggcatccttgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgag 2393296
Query: 268 cagttctgggtcattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctc 327
||||| ||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct: 2393297 cagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttctg 2393356
Query: 328 nnggtcatagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgac 387
||| | |||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 2393357 aaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaa 2393416
Query: 388 gaattctcagagct 401
|| |||||||||||
Sbjct: 2393417 gagttctcagagct 2393430
Score = 42.1 bits (21), Expect = 0.24
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 ttgcctgccatctgtttattgacggggaaatttatcactccagaggtaa 52
||||||||||| || || | || ||||| |||||||||||||||||||
Sbjct: 2393057 ttgcctgccatatgcttgctcactgggaagtttatcactccagaggtaa 2393105
>gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-M03, mRNA sequence
Length = 635
Score = 180 bits (91), Expect = 4e-043
Identities = 203/243 (83%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||||||| || || ||||||||||| ||||| ||||| ||||||| || |||||||
Sbjct: 105 caatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtcactggcatcct 164
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
|||||||||||||||||| | || ||||| |||||||||||||||||||| |||||
Sbjct: 165 tgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggt 224
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|||||||||||| || || || ||||||||||| || || |||||||| ||| | ||
Sbjct: 225 cattggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaagtccttgc 284
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 285 tggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcaga 344
Query: 399 gct 401
|||
Sbjct: 345 gct 347
>gb|D24964.1|D24964 RICR2854A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2854_1A, mRNA sequence
Length = 446
Score = 180 bits (91), Expect = 4e-043
Identities = 203/243 (83%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||||||| || || ||||||||||| ||||| ||||| ||||||| || |||||||
Sbjct: 86 caatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtcactggcatcct 145
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
|||||||||||||||||| | || ||||| |||||||||||||||||||| |||||
Sbjct: 146 tgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggt 205
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|||||||||||| || || || ||||||||||| || || |||||||| ||| | ||
Sbjct: 206 cattggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaagtccttgc 265
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 266 tggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcaga 325
Query: 399 gct 401
|||
Sbjct: 326 gct 328
>dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C05, full
insert sequence
Length = 1335
Score = 180 bits (91), Expect = 4e-043
Identities = 203/243 (83%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||||||| || || ||||||||||| ||||| ||||| ||||||| || |||||||
Sbjct: 102 caatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtcactggcatcct 161
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
|||||||||||||||||| | || ||||| |||||||||||||||||||| |||||
Sbjct: 162 tgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggt 221
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|||||||||||| || || || ||||||||||| || || |||||||| ||| | ||
Sbjct: 222 cattggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaagtccttgc 281
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 282 tggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcaga 341
Query: 399 gct 401
|||
Sbjct: 342 gct 344
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full
insert sequence
Length = 3746
Score = 180 bits (91), Expect = 4e-043
Identities = 203/243 (83%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||||||| || || ||||||||||| ||||| ||||| ||||||| || |||||||
Sbjct: 2765 caatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtcactggcatcct 2824
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
|||||||||||||||||| | || ||||| |||||||||||||||||||| |||||
Sbjct: 2825 tgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggt 2884
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|||||||||||| || || || ||||||||||| || || |||||||| ||| | ||
Sbjct: 2885 cattggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaagtccttgc 2944
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 2945 tggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcaga 3004
Query: 399 gct 401
|||
Sbjct: 3005 gct 3007
>ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3746
Score = 180 bits (91), Expect = 4e-043
Identities = 203/243 (83%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||||||| || || ||||||||||| ||||| ||||| ||||||| || |||||||
Sbjct: 2765 caatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtcactggcatcct 2824
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
|||||||||||||||||| | || ||||| |||||||||||||||||||| |||||
Sbjct: 2825 tgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggt 2884
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|||||||||||| || || || ||||||||||| || || |||||||| ||| | ||
Sbjct: 2885 cattggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaagtccttgc 2944
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 2945 tggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcaga 3004
Query: 399 gct 401
|||
Sbjct: 3005 gct 3007
>gb|AU032362.1|AU032362 AU032362 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3939_1A, mRNA sequence
Length = 460
Score = 176 bits (89), Expect = 6e-042
Identities = 202/242 (83%), Gaps = 1/242 (0%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 73 aatgtngccagtntctggttcatgtcactttttatctgcatttttgctactggcatcctg 132
Query: 220 nnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtc 279
||||||| ||||| ||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct: 133 gaaatgaganggagttgtgttggcattgatgattggtggagaaatgaacaattttgggtc 192
Query: 280 attggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagct 339
|||||||| || || ||||||||||| ||| |||| ||||||||| | ||||||||||
Sbjct: 193 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 252
Query: 340 ggtgttgatacaagctncact-nngacatcaaagggtggagatgatgacgaattctcaga 398
||| | ||||| || | |||| |||| |||| ||||| || ||||| || ||||||||
Sbjct: 253 ggtatagatacgagtttcactngtgacagcaaaaggtggggacgatgaagagttctcaga 312
Query: 399 gc 400
||
Sbjct: 313 gc 314
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 19 acattgccagccatctgtttgctaactgggaagtttatcactccagag 66
>gb|AU065353.1|AU065353 AU065353 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3439_1A, mRNA sequence
Length = 400
Score = 167 bits (84), Expect = 6e-039
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||||||| || || ||||||||||| ||||| ||||| ||||||| || |||||||
Sbjct: 86 caatgttgctagtctatggttcatgtcgcttttcatctgtatttttgtcactggcatcct 145
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
|||||||||||||||||| | || ||||| |||||||||||||||||||| |||||
Sbjct: 146 tgaaatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggt 205
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|||||||||||| || || || ||||||||||| || || |||||||| | | ||
Sbjct: 206 cattggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaanaccttgc 265
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 266 tggtgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcaga 325
Query: 399 gct 401
|||
Sbjct: 326 gct 328
>gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 655
Score = 153 bits (77), Expect = 9e-035
Identities = 153/180 (85%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||||||||||||||| | || ||||| |||||||||||||||||||| ||||||||
Sbjct: 6 aatgagatggagtggtgtggccatcgatgactggtggaggaatgagcagttttgggtcat 65
Query: 282 tggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctgg 341
||||||||| || || || ||||||||||| || || |||||||| ||| | |||||
Sbjct: 66 tggaggtgtttcttcacatctcttcgctgtattccaaggacttctgaaagtccttgctgg 125
Query: 342 tgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcagagct 401
||||||||| |||| |||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 126 tgttgataccagcttcactgtgacatcaaaggccggagatgatgaagagttctcagagct 185
>gb|CB645001.1|CB645001 OSJNEb06H07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06H07 5', mRNA sequence
Length = 859
Score = 125 bits (63), Expect = 2e-026
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 160 aatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcctn 219
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 768 aatgttgccagtctctggttcatgtcactttttatctgcatttttgctactggcatcctg 827
Query: 220 nnaatgagatggagtggtgttgggattgatga 251
||||||||||||||||||||| ||||||||
Sbjct: 828 gaaatgagatggagtggtgttggcattgatga 859
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1 acattgcctgccatctgtttattgacggggaaatttatcactccagag 48
|||||||| ||||||||||| | || ||||| |||||||||||||||
Sbjct: 714 acattgccagccatctgtttgctaactgggaagtttatcactccagag 761
>gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 121 bits (61), Expect = 3e-025
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 301 ctcttcgctgtgtttcagggacttctcnnggtcatagctggtgttgatacaagctncact 360
||||| |||||||| || ||||||||| ||||||||||||| | |||||||||| ||||
Sbjct: 14 ctctttgctgtgttccaaggacttctcaaggtcatagctggtatcgatacaagcttcact 73
Query: 361 nngacatcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||||||||||||||||| || ||||||||||||||
Sbjct: 74 gtgacatcaaagggtggagatgatgaagagttctcagagctgta 117
>gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-N01, mRNA sequence
Length = 505
Score = 117 bits (59), Expect = 5e-024
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 307 gctgtgtttcagggacttctcnnggtcatagctggtgttgatacaagctncactnngaca 366
|||||||| || ||||||||| ||||||||||||| | |||||||||| |||| ||||
Sbjct: 20 gctgtgttccaaggacttctcaaggtcatagctggtatcgatacaagcttcactgtgaca 79
Query: 367 tcaaagggtggagatgatgacgaattctcagagctgta 404
|||||||||||||||||||| || ||||||||||||||
Sbjct: 80 tcaaagggtggagatgatgaagagttctcagagctgta 117
>gb|CA999072.1|CA999072 S234M_G06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 644
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 338 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 397
Query: 283 ggaggt 288
||||||
Sbjct: 398 ggaggt 403
>gb|CF277609.1|CF277609 14ETL--03-D13.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-D13, mRNA sequence
Length = 650
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 46 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 105
Query: 283 ggaggt 288
||||||
Sbjct: 106 ggaggt 111
>dbj|AK061688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B05, full
insert sequence
Length = 1582
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 646 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 705
Query: 283 ggaggt 288
||||||
Sbjct: 706 ggaggt 711
>dbj|AK062007.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E01, full
insert sequence
Length = 1241
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 454 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 513
Query: 283 ggaggt 288
||||||
Sbjct: 514 ggaggt 519
>dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full
insert sequence
Length = 4282
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 2981 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 3040
Query: 283 ggaggt 288
||||||
Sbjct: 3041 ggaggt 3046
>dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059I02, full
insert sequence
Length = 3954
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 3167 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 3226
Query: 283 ggaggt 288
||||||
Sbjct: 3227 ggaggt 3232
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 20721 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 20780
Query: 283 ggaggt 288
||||||
Sbjct: 20781 ggaggt 20786
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence,
complete sequence
Length = 41693
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 6617 atgaggtggagtggtgttggcatcgatgaatggtggaggaatgagcagttttgggttatt 6558
Query: 283 ggaggt 288
||||||
Sbjct: 6557 ggaggt 6552
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1559_F09
Length = 87792
Score = 83.8 bits (42), Expect = 7e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct: 60396 atgaggtggagtggtgttggcatcgatgagtggtggaggaatgaacagttctgggttatt 60337
Query: 283 ggaggt 288
||||||
Sbjct: 60336 ggaggt 60331
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 718,700
Number of Sequences: 438736
Number of extensions: 718700
Number of successful extensions: 15475
Number of sequences better than 0.5: 134
Number of HSP's better than 0.5 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14044
Number of HSP's gapped (non-prelim): 1417
length of query: 425
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 405
effective length of database: 2,791,645,196
effective search space: 1130616304380
effective search space used: 1130616304380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)