BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AG213996.1| Oryza sativa (japonica cultivar-group) DNA,... 216 3e-054
dbj|AG205918.1| Oryza sativa (japonica cultivar-group) DNA,... 216 3e-054
gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-grou... 216 3e-054
dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate... 216 3e-054
dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA... 216 3e-054
gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) c... 216 3e-054
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 216 3e-054
ref|XM_463619.1| Oryza sativa (japonica cultivar-group), p... 216 3e-054
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 216 3e-054
dbj|AP003437.3| Oryza sativa (japonica cultivar-group) geno... 216 3e-054
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 216 3e-054
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 216 3e-054
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 216 3e-054
gb|CG408661.1|CG408661 Ds353 Ds insertion lines Oryza sativ... 194 1e-047
dbj|AG023731.1| Oryza sativa (japonica cultivar-group) DNA,... 170 2e-040
dbj|AG024164.1| Oryza sativa (japonica cultivar-group) DNA,... 170 2e-040
dbj|AG024022.1| Oryza sativa (japonica cultivar-group) DNA,... 141 2e-031
dbj|AG209514.1| Oryza sativa (japonica cultivar-group) DNA,... 94 3e-017
gb|C74656.1|C74656 C74656 Rice cDNA from immature leaf incl... 40 0.41
gb|AU058184.1|AU058184 AU058184 Oryza sativa Nipponbare imm... 40 0.41
gb|CB668066.1|CB668066 OSJNEd15L13.r OSJNEd Oryza sativa (j... 40 0.41
gb|CF310971.1|CF310971 ABF--05-P05.b1 ABF3-overexpressing t... 40 0.41
gb|CF310972.1|CF310972 ABF--05-P05.g1 ABF3-overexpressing t... 40 0.41
dbj|AP003889.2| Oryza sativa (japonica cultivar-group) chro... 40 0.41
dbj|AK067654.1| Oryza sativa (japonica cultivar-group) cDNA... 40 0.41
dbj|AK102058.1| Oryza sativa (japonica cultivar-group) cDNA... 40 0.41
dbj|AP005325.5| Oryza sativa (japonica cultivar-group) geno... 40 0.41
gb|AACV01015872.1| Oryza sativa (japonica cultivar-group) c... 40 0.41
ref|NM_187827.2| Oryza sativa (japonica cultivar-group), mRNA 40 0.41
ref|XM_506284.1| PREDICTED Oryza sativa (japonica cultivar-... 40 0.41
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 40 0.41
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.41
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.41
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 40 0.41
>dbj|AG213996.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12049T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9050, genomic survey sequence
Length = 513
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 389 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 330
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 329 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 270
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 269 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 210
Query: 185 gagcaccat 193
||| |||||
Sbjct: 209 gagaaccat 201
>dbj|AG205918.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7015_0_103_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE7015, genomic survey sequence
Length = 627
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || ||||||||||| |||||||| || || ||||||||||| || |||||||
Sbjct: 501 tccccattgctcatcaatctcatgccttgtactcgttatgacaagctccgatgcatccaa 442
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 441 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 382
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 381 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 322
Query: 185 gagcaccat 193
||| |||||
Sbjct: 321 gagaaccat 313
>gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0678F11, ***
SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 155574
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 114460 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 114401
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 114400 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 114341
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 114340 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 114281
Query: 185 gagcaccat 193
||| |||||
Sbjct: 114280 gagaaccat 114272
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds
Length = 9181
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 5299 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 5240
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 5239 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtccatctcctcctt 5180
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 5179 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 5120
Query: 185 gagcaccat 193
||| |||||
Sbjct: 5119 gagaaccat 5111
>dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full
insert sequence
Length = 3825
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 1491 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 1432
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 1431 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 1372
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 1371 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 1312
Query: 185 gagcaccat 193
||| |||||
Sbjct: 1311 gagaaccat 1303
>gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002933, whole
genome shotgun sequence
Length = 31042
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 9712 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 9653
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 9652 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 9593
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 9592 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 9533
Query: 185 gagcaccat 193
||| |||||
Sbjct: 9532 gagaaccat 9524
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 40178701 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 40178760
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 40178761 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 40178820
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 40178821 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 40178880
Query: 185 gagcaccat 193
||| |||||
Sbjct: 40178881 gagaaccat 40178889
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3303
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 1308 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 1249
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 1248 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 1189
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 1188 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 1129
Query: 185 gagcaccat 193
||| |||||
Sbjct: 1128 gagaaccat 1120
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 14626084 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 14626143
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 14626144 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 14626203
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 14626204 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 14626263
Query: 185 gagcaccat 193
||| |||||
Sbjct: 14626264 gagaaccat 14626272
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0678F11
Length = 154292
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 41115 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 41174
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 41175 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 41234
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 41235 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 41294
Query: 185 gagcaccat 193
||| |||||
Sbjct: 41295 gagaaccat 41303
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 14386322 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 14386381
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 14386382 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 14386441
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 14386442 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 14386501
Query: 185 gagcaccat 193
||| |||||
Sbjct: 14386502 gagaaccat 14386510
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 39588043 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 39588102
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 39588103 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 39588162
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 39588163 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 39588222
Query: 185 gagcaccat 193
||| |||||
Sbjct: 39588223 gagaaccat 39588231
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 216 bits (109), Expect = 3e-054
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 40098031 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 40098090
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 40098091 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 40098150
Query: 125 ggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccagt 184
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 40098151 cgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgaccggt 40098210
Query: 185 gagcaccat 193
||| |||||
Sbjct: 40098211 gagaaccat 40098219
>gb|CG408661.1|CG408661 Ds353 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 271
Score = 194 bits (98), Expect = 1e-047
Identities = 168/190 (88%), Gaps = 1/190 (0%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctg-gtgatgacaagctctgacgcatcca 63
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 225 tccccattgctcatcaatctcctgccttgtactaagttatgacaagctccgctgcatcca 166
Query: 64 gggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcct 123
|||||||||||||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 165 aggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcct 106
Query: 124 tggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgagtgaccag 183
| ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |
Sbjct: 105 tcgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaatgacggg 46
Query: 184 tgagcaccat 193
|||| |||||
Sbjct: 45 tgagaaccat 36
>dbj|AG023731.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND2003_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND2003, genomic survey sequence
Length = 481
Score = 170 bits (86), Expect = 2e-040
Identities = 124/137 (90%)
Strand = Plus / Minus
Query: 57 gcatccagggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatc 116
||||||| ||||||||||| |||||| || ||||||||||||||||| ||||| || |||
Sbjct: 450 gcatccaaggccagctcctnaccctcaatgcgcctcatgatcttgtaagttgagtcaatc 391
Query: 117 tcctccttggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgag 176
|||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 390 tcctccttcgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaa 331
Query: 177 tgaccagtgagcaccat 193
||||| ||||| |||||
Sbjct: 330 tgaccggtgagaaccat 314
>dbj|AG024164.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND3060_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND3060, genomic survey sequence
Length = 729
Score = 170 bits (86), Expect = 2e-040
Identities = 124/137 (90%)
Strand = Plus / Minus
Query: 57 gcatccagggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatc 116
||||||| |||||||||||||||||| || ||||||||||||||||| ||||| || |||
Sbjct: 543 gcatccaaggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatc 484
Query: 117 tcctccttggacatgcgcccttgcttcaggatttgctccagcttgttcctcccaagtgag 176
||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 483 tcctcnttcgacatgcgcccttgcttcatgatctgctccagcttgttcctcccaagtgaa 424
Query: 177 tgaccagtgagcaccat 193
||||| ||||| |||||
Sbjct: 423 tgaccggtgagaaccat 407
>dbj|AG024022.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND3010_0_706_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND3010, genomic survey sequence
Length = 372
Score = 141 bits (71), Expect = 2e-031
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 227 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 286
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
|||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||
Sbjct: 287 ggccagctcctcaccctcaatgcgcctcatgatcttgtaagttgagtcaatctcctcctt 346
Query: 125 ggacatgcgcc 135
||||||||||
Sbjct: 347 cgacatgcgcc 357
>dbj|AG209514.1| Oryza sativa (japonica cultivar-group) DNA,
clone:NE7022_0_101_1A, 3' flanking sequence of Tos17
insertion in rice strain NE7022, genomic survey
sequence
Length = 724
Score = 93.7 bits (47), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
|||||| || |||||||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 91 tccccattgctcatcaatctcctgccttgtactcgttatgacaagctccgctgcatccaa 32
Query: 65 ggccagctcctcaccctcgatacgcctcatg 95
|||||||||||||||||| || |||||||||
Sbjct: 31 ggccagctcctcaccctcaatgcgcctcatg 1
>gb|C74656.1|C74656 C74656 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50087_1A,
mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 269 gccagctcctcaccctcgat 250
>gb|AU058184.1|AU058184 AU058184 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50089_1A, mRNA
sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 147 gccagctcctcaccctcgat 128
>gb|CB668066.1|CB668066 OSJNEd15L13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15L13 3', mRNA sequence
Length = 776
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 358 gccagctcctcaccctcgat 377
>gb|CF310971.1|CF310971 ABF--05-P05.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-P05, mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 403 gccagctcctcaccctcgat 422
>gb|CF310972.1|CF310972 ABF--05-P05.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-P05, mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 532 gccagctcctcaccctcgat 513
>dbj|AP003889.2| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1213_A07,
*** SEQUENCING IN PROGRESS ***
Length = 119829
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 5913 gccagctcctcaccctcgat 5932
>dbj|AK067654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B03, full
insert sequence
Length = 2239
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 1910 gccagctcctcaccctcgat 1891
>dbj|AK102058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082D07, full
insert sequence
Length = 2619
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 1892 gccagctcctcaccctcgat 1873
>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0710F09
Length = 198867
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 121757 gccagctcctcaccctcgat 121776
>gb|AACV01015872.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015872, whole
genome shotgun sequence
Length = 29554
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 23773 gccagctcctcaccctcgat 23792
>ref|NM_187827.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 2239
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 1910 gccagctcctcaccctcgat 1891
>ref|XM_506284.1| PREDICTED Oryza sativa (japonica cultivar-group), P0710F09.129 mRNA
Length = 2618
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 1891 gccagctcctcaccctcgat 1872
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 644296 gccagctcctcaccctcgat 644315
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060
genomic scaffold, whole genome shotgun sequence
Length = 1552265
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 634545 gccagctcctcaccctcgat 634564
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 12068022 gccagctcctcaccctcgat 12068041
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 gccagctcctcaccctcgat 85
||||||||||||||||||||
Sbjct: 12863633 gccagctcctcaccctcgat 12863652
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 264,949
Number of Sequences: 438736
Number of extensions: 264949
Number of successful extensions: 6690
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6550
Number of HSP's gapped (non-prelim): 139
length of query: 197
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 177
effective length of database: 2,791,645,196
effective search space: 494121199692
effective search space used: 494121199692
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)