BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM10b11.yg.2.1
(554 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK066625.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AACV01020663.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 56 2e-005
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AC079685.2| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CB638002.1|CB638002 OSJNEa05L16.f OSJNEa Oryza sativa (j... 52 3e-004
gb|CB639726.1|CB639726 OSJNEa11L18.f OSJNEa Oryza sativa (j... 52 3e-004
dbj|AK068679.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
ref|NM_194571.1| Oryza sativa (japonica cultivar-group) put... 52 3e-004
dbj|AK070621.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
ref|NM_194568.1| Oryza sativa (japonica cultivar-group) put... 48 0.005
ref|NM_194569.1| Oryza sativa (japonica cultivar-group) put... 48 0.005
gb|AACV01020659.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AQ954690.1|AQ954690 nbeb0071F15f CUGI Rice BAC Library (... 44 0.079
dbj|AK065895.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
gb|AC107314.1| Oryza sativa (japonica cultivar-group) culti... 44 0.079
gb|AACV01021363.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
ref|NM_196115.1| Oryza sativa (japonica cultivar-group) put... 44 0.079
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 44 0.079
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
>dbj|AK066625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068M11, full
insert sequence
Length = 971
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 370 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 311
Query: 324 tgggtacc 331
| ||||||
Sbjct: 310 taggtacc 303
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 769782 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 769723
Query: 324 tgggtacc 331
| ||||||
Sbjct: 769722 taggtacc 769715
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 754378 gcagatgaggagacgccactgattcag 754352
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 744280 gcagatgaggagaggccactaattcatcacctgcctcca 744242
>gb|AACV01020663.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020663, whole
genome shotgun sequence
Length = 52296
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 16815 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 16756
Query: 324 tgggtacc 331
| ||||||
Sbjct: 16755 taggtacc 16748
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 1407 gcagatgaggagacgccactgattcag 1381
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 774921 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 774862
Query: 324 tgggtacc 331
| ||||||
Sbjct: 774861 taggtacc 774854
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 759517 gcagatgaggagacgccactgattcag 759491
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 749419 gcagatgaggagaggccactaattcatcacctgcctcca 749381
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080
genomic scaffold, whole genome shotgun sequence
Length = 3249876
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 906246 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 906187
Query: 324 tgggtacc 331
| ||||||
Sbjct: 906186 taggtacc 906179
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 890838 gcagatgaggagacgccactgattcag 890812
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 878088 gcagatgaggagaggccactaattcatcacctgcctcca 878050
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome
shotgun sequence
Length = 21480893
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 906246 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 906187
Query: 324 tgggtacc 331
| ||||||
Sbjct: 906186 taggtacc 906179
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 890838 gcagatgaggagacgccactgattcag 890812
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 878088 gcagatgaggagaggccactaattcatcacctgcctcca 878050
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 10377607 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 10377548
Query: 499 gggaagatac 508
||||||||||
Sbjct: 10377547 gggaagatac 10377538
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
complete sequence
Length = 22685906
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 769782 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 769723
Query: 324 tgggtacc 331
| ||||||
Sbjct: 769722 taggtacc 769715
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 754378 gcagatgaggagacgccactgattcag 754352
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 744280 gcagatgaggagaggccactaattcatcacctgcctcca 744242
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 11177649 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 11177590
Query: 499 gggaagatac 508
||||||||||
Sbjct: 11177589 gggaagatac 11177580
>gb|AC079685.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBb0012A20, complete sequence
Length = 131599
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 50639 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 50580
Query: 324 tgggtacc 331
| ||||||
Sbjct: 50579 taggtacc 50572
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 35235 gcagatgaggagacgccactgattcag 35209
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 25137 gcagatgaggagaggccactaattcatcacctgcctcca 25099
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgattc 323
||||||| |||| |||||| ||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 769779 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgatcc 769720
Query: 324 tgggtacc 331
| ||||||
Sbjct: 769719 taggtacc 769712
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcag 202
||||||||||||| |||||||||||||
Sbjct: 754375 gcagatgaggagacgccactgattcag 754349
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 744277 gcagatgaggagaggccactaattcatcacctgcctcca 744239
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 11184089 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 11184030
Query: 499 gggaagatac 508
||||||||||
Sbjct: 11184029 gggaagatac 11184020
>gb|CB638002.1|CB638002 OSJNEa05L16.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa05L16 5', mRNA sequence
Length = 605
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgat 321
||||||| |||| |||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct: 289 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgat 346
>gb|CB639726.1|CB639726 OSJNEa11L18.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa11L18 5', mRNA sequence
Length = 602
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgat 321
||||||| |||| |||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct: 285 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgat 342
>dbj|AK068679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160C22, full
insert sequence
Length = 1879
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgat 321
||||||| |||| |||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct: 252 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgat 309
>ref|NM_194571.1| Oryza sativa (japonica cultivar-group) putative LeOPT1 -
oligopeptide transporter (OSJNBb0012A20.8), mRNA
Length = 1737
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 264 tcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatgat 321
||||||| |||| |||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct: 104 tcaacaaccagcctgctctcaagcgcagcacggggaattggagagcatgcttcatgat 161
>dbj|AK070621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063N08, full
insert sequence
Length = 2198
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagga 219
||||||||||||| ||||||||||||| | ||| |||| |||||
Sbjct: 226 gcagatgaggagacgccactgattcagcagctgcctccggagga 269
>ref|NM_194568.1| Oryza sativa (japonica cultivar-group) putative LeOPT1 -
oligopeptide transporter (OSJNBb0012A20.5), mRNA
Length = 1776
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagga 219
|||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 46 gcagatgaggagaggccactaattcatcacctgcctccacagga 89
>ref|NM_194569.1| Oryza sativa (japonica cultivar-group) putative LeOPT1 -
oligopeptide transporter (OSJNBb0012A20.6), mRNA
Length = 1701
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagga 219
||||||||||||| ||||||||||||| | ||| |||| |||||
Sbjct: 16 gcagatgaggagacgccactgattcagcagctgcctccggagga 59
>gb|AACV01020659.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020659, whole
genome shotgun sequence
Length = 10899
Score = 46.1 bits (23), Expect = 0.020
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctcca 214
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 7578 gcagatgaggagaggccactaattcatcacctgcctcca 7540
>gb|AQ954690.1|AQ954690 nbeb0071F15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071F15f, DNA
sequence
Length = 454
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 138 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 197
Query: 499 gggaagatac 508
||||||||||
Sbjct: 198 gggaagatac 207
>dbj|AK065895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049E13, full
insert sequence
Length = 2997
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 1357 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 1416
Query: 499 gggaagatac 508
||||||||||
Sbjct: 1417 gggaagatac 1426
Score = 42.1 bits (21), Expect = 0.31
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 179 gatgaggagaggccactgattcagtacctggctccagagga 219
|||||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 1103 gatgaggacaggccactgattcatcacctgcctccacagga 1143
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
OJ1208D02 from chromosome 10, complete sequence
Length = 120132
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 45769 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 45710
Query: 499 gggaagatac 508
||||||||||
Sbjct: 45709 gggaagatac 45700
>gb|AACV01021363.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021363, whole
genome shotgun sequence
Length = 20306
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 17718 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 17777
Query: 499 gggaagatac 508
||||||||||
Sbjct: 17778 gggaagatac 17787
>ref|NM_196115.1| Oryza sativa (japonica cultivar-group) putative proton-dependent
oligopeptide transport (OJ1208D02.10), mRNA
Length = 1656
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 210 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 269
Query: 499 gggaagatac 508
||||||||||
Sbjct: 270 gggaagatac 279
Score = 42.1 bits (21), Expect = 0.31
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 179 gatgaggagaggccactgattcagtacctggctccagagga 219
|||||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 13 gatgaggacaggccactgattcatcacctgcctccacagga 53
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
|||||| ||||| |||| | |||| || ||||| | ||||||||||| ||||| || ||
Sbjct: 1811545 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 1811486
Query: 499 gggaagatac 508
||||||||||
Sbjct: 1811485 gggaagatac 1811476
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 44.1 bits (22), Expect = 0.079
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 439 ctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtactg 498
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Sbjct: 1987289 ctggatcggcagttgcttcttcacaccactcattggagccttcttggctgacacatattg 1987230
Query: 499 gggaagatac 508
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Sbjct: 1987229 gggaagatac 1987220
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 625,783
Number of Sequences: 438736
Number of extensions: 625783
Number of successful extensions: 10289
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10008
Number of HSP's gapped (non-prelim): 281
length of query: 554
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 533
effective length of database: 2,791,206,460
effective search space: 1487713043180
effective search space used: 1487713043180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)