BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102588.1| Oryza sativa (japonica cultivar-group) cDNA... 1298 0.0
ref|XM_473805.1| Oryza sativa (japonica cultivar-group), p... 910 0.0
dbj|AK060852.1| Oryza sativa (japonica cultivar-group) cDNA... 870 0.0
gb|CB639655.1|CB639655 OSJNEa11H15.f OSJNEa Oryza sativa (j... 250 3e-063
gb|AACV01010446.1| Oryza sativa (japonica cultivar-group) c... 204 2e-049
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 204 2e-049
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 204 2e-049
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 204 2e-049
emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromoso... 204 2e-049
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 204 2e-049
gb|AQ686374.1|AQ686374 nbxb0069K13f CUGI Rice BAC Library O... 127 3e-026
gb|AQ861378.1|AQ861378 nbeb0016F04r CUGI Rice BAC Library (... 115 1e-022
gb|AQ163619.1|AQ163619 nbxb0007O08f CUGI Rice BAC Library O... 90 6e-015
dbj|AK120963.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.33
dbj|AP003281.3| Oryza sativa (japonica cultivar-group) geno... 44 0.33
dbj|AP003236.3| Oryza sativa (japonica cultivar-group) geno... 44 0.33
gb|AACV01001110.1| Oryza sativa (japonica cultivar-group) c... 44 0.33
gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) c... 44 0.33
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.33
ref|NM_193816.1| Oryza sativa (japonica cultivar-group), p... 44 0.33
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 44 0.33
dbj|AP003848.3| Oryza sativa (japonica cultivar-group) geno... 44 0.33
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.33
dbj|AP006530.3| Oryza sativa (japonica cultivar-group) geno... 44 0.33
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.33
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.33
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.33
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.33
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.33
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.33
>dbj|AK102588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098F09, full
insert sequence
Length = 2276
Score = 1298 bits (655), Expect = 0.0
Identities = 1185/1361 (87%), Gaps = 3/1361 (0%)
Strand = Plus / Plus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 433 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 492
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcagccacaatcgaag 530
||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct: 493 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcagccacaatcaaag 552
Query: 531 aatggtatcaacagctttggtggtcttggagcaacccttgttgactcacttgatacccta 590
|||||| |||| |||||||||||||| || ||||| ||||| |||||||||||||| ||
Sbjct: 553 aatggtgtcaatagctttggtggtctcggggcaactcttgtggactcacttgatacactg 612
Query: 591 tacataatgggcctgaaagatgaatttcagaaagctagagactgggtggcggagtcatta 650
|| ||||||||||| || ||||||||||||| || |||||||||||||| || ||| ||
Sbjct: 613 tatataatgggcctaaaggatgaatttcagagggccagagactgggtggccgattcacta 672
Query: 651 gactttgacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggt 710
||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 673 agctttgacaaggattacgatgcaagtgtctttgaaacgaccataagagttgttggaggc 732
Query: 711 ctgcttagttcatacgatctatctggtgataaagtatttcttgataaggctaaagatatt 770
|| || ||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 733 ctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaaggccaaagatatt 792
Query: 771 acagatcgactcttacctgcttgggatacaacatctggcatcccttataatagaataaac 830
|| || || || ||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct: 793 actgaccgtctactacctgcttgggatacaccatctggtatcccttataatagaatcaac 852
Query: 831 ctagctcatggacgagcccataatcctggatggactaacggtgatagtatccttgcagat 890
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 853 ctagctcatggacgagcccataatcctggatggaccaatggtgatagtatccttgctgat 912
Query: 891 tctggtacggagcaacttgaattcatagctctttcacagaggactggagatcccaaatac 950
||||| ||||||||||||||||| |||||| | |||||||||||||| |||||||| ||
Sbjct: 913 tctggcacggagcaacttgaatttatagctttgtcacagaggactggtgatcccaagtat 972
Query: 951 cagcagaaggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggttta 1010
|| || ||||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| |||
Sbjct: 973 caacaaaaggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggctta 1032
Query: 1011 ctgcctatttacataaatcctcattctgggacagcatcatactcaactatcacatttggt 1070
|| ||||| |||||||| |||||||| || || || || |||||||| || |||||||||
Sbjct: 1033 ctccctatatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggt 1092
Query: 1071 gctatgggagacagcttctacgaatatttgctcaaggtctggatccaggggaataaaact 1130
|| |||||||| ||||||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct: 1093 gcaatgggagatagcttctacgagtacttgctcaaggtttgggtccaggggaataaaact 1152
Query: 1131 gagcatgtaaaacactacagacaaatgtgggagacatcaatggaaggtctattaagttta 1190
||||||||||| || |||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct: 1153 gagcatgtaaagcattacagacaaatgtgggagacatcaatggaaggcctactaagcttg 1212
Query: 1191 accaagaaaactacaccatctaattactactacatttgtgaaaagaatggtggctcgttg 1250
||||| ||||||||||| |||||||||||||||||||| || ||||||||||| || |||
Sbjct: 1213 accaaaaaaactacaccctctaattactactacatttgcgagaagaatggtggttcattg 1272
Query: 1251 tctgacaagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctct 1310
||||||||||||||||| ||||| || ||||| |||||||||||||| | || ||||||
Sbjct: 1273 tctgacaagatggatgagcttgcatgttttgcccctggtatgctggcactgggggcctct 1332
Query: 1311 gg---ttacgggccagaaaaatcagagcaaattatgaatcttgcaaaagagcttgctagg 1367
|| | | | | | ||||| | ||| |||||||||||||||| |||||||||||| ||
Sbjct: 1333 ggctatgaggagactgaaaaggctgaggaaattatgaatcttgcgaaagagcttgctcgg 1392
Query: 1368 acctgctataatttctaccaaaccactcccacgaagttggctggagaaaattattttttc 1427
||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||||||||||
Sbjct: 1393 acctgttataacttctaccaaacaactcctacaaagttggctggggagaattattttttc 1452
Query: 1428 catactggacaggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgtt 1487
|||||||||||||| ||| |||||||| || ||||| ||| ||||||| ||||||||
Sbjct: 1453 catactggacaggatatgaacgtgggcacatcatggaatatcctgagacctgagactgtc 1512
Query: 1488 gaatcactgatgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgg 1547
|||||||| |||||| ||||||| | |||||||| |||||||||||||| |||||||||
Sbjct: 1513 gaatcacttatgtacttgtggcgtcttacggggaacaaaacataccaagactgggggtgg 1572
Query: 1548 gacatattccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgaga 1607
|||||||||||||||||||| ||||||||||||||||||||||| || || || ||||||
Sbjct: 1573 gacatattccaggcatttgaaaagaactcccgcatagaatctggttacgttgggctgaga 1632
Query: 1608 gatgtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctg 1667
|||||||| ||||| || || || |||||||| || || |||||||| |||||||| ||
Sbjct: 1633 gatgtgaatactggcgagaaggataacatgatacaaagcttcttcctagcagagactctc 1692
Query: 1668 aagtacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttc 1727
|||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 1693 aagtacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttc 1752
Query: 1728 aatactgaagctcacccattgagaattgttccagtaaatga 1768
||||| ||||| ||||||||| |||||||||| |||||||
Sbjct: 1753 aataccgaagcccacccattgcgaattgttcctttaaatga 1793
Score = 250 bits (126), Expect = 3e-063
Identities = 198/222 (89%)
Strand = Plus / Plus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 181 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 240
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 241 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 300
Query: 273 ctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaatcggttgcat 332
|||||| ||||||||||||| || ||||| ||||| || ||| | |||||| ||||| |
Sbjct: 301 ctcgtccgcgagtacgagtcagaaatttctcgattggatgataaagtaaatcagttgcgt 360
Query: 333 gaccagctaagaaaggctggagttaatctggatgaaaatcca 374
|||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 361 gaccagttaagaaaggctggagttcatctggatgaaaatcca 402
>ref|XM_473805.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1719
Score = 910 bits (459), Expect = 0.0
Identities = 780/887 (87%)
Strand = Plus / Plus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 280 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 339
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcagccacaatcgaag 530
||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct: 340 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcagccacaatcaaag 399
Query: 531 aatggtatcaacagctttggtggtcttggagcaacccttgttgactcacttgatacccta 590
|||||| |||| |||||||||||||| || ||||| ||||| |||||||||||||| ||
Sbjct: 400 aatggtgtcaatagctttggtggtctcggggcaactcttgtggactcacttgatacactg 459
Query: 591 tacataatgggcctgaaagatgaatttcagaaagctagagactgggtggcggagtcatta 650
|| ||||||||||| || ||||||||||||| || |||||||||||||| || ||| ||
Sbjct: 460 tatataatgggcctaaaggatgaatttcagagggccagagactgggtggccgattcacta 519
Query: 651 gactttgacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggt 710
||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 520 agctttgacaaggattacgatgcaagtgtctttgaaacgaccataagagttgttggaggc 579
Query: 711 ctgcttagttcatacgatctatctggtgataaagtatttcttgataaggctaaagatatt 770
|| || ||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 580 ctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaaggccaaagatatt 639
Query: 771 acagatcgactcttacctgcttgggatacaacatctggcatcccttataatagaataaac 830
|| || || || ||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct: 640 actgaccgtctactacctgcttgggatacaccatctggtatcccttataatagaatcaac 699
Query: 831 ctagctcatggacgagcccataatcctggatggactaacggtgatagtatccttgcagat 890
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 700 ctagctcatggacgagcccataatcctggatggaccaatggtgatagtatccttgctgat 759
Query: 891 tctggtacggagcaacttgaattcatagctctttcacagaggactggagatcccaaatac 950
||||| ||||||||||||||||| |||||| | |||||||||||||| |||||||| ||
Sbjct: 760 tctggcacggagcaacttgaatttatagctttgtcacagaggactggtgatcccaagtat 819
Query: 951 cagcagaaggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggttta 1010
|| || ||||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| |||
Sbjct: 820 caacaaaaggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggctta 879
Query: 1011 ctgcctatttacataaatcctcattctgggacagcatcatactcaactatcacatttggt 1070
|| ||||| |||||||| |||||||| || || || || |||||||| || |||||||||
Sbjct: 880 ctccctatatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggt 939
Query: 1071 gctatgggagacagcttctacgaatatttgctcaaggtctggatccaggggaataaaact 1130
|| |||||||| ||||||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct: 940 gcaatgggagatagcttctacgagtacttgctcaaggtttgggtccaggggaataaaact 999
Query: 1131 gagcatgtaaaacactacagacaaatgtgggagacatcaatggaaggtctattaagttta 1190
||||||||||| || |||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct: 1000 gagcatgtaaagcattacagacaaatgtgggagacatcaatggaaggcctactaagcttg 1059
Query: 1191 accaagaaaactacaccatctaattactactacatttgtgaaaagaatggtggctcgttg 1250
||||| ||||||||||| |||||||||||||||||||| || ||||||||||| || |||
Sbjct: 1060 accaaaaaaactacaccctctaattactactacatttgcgagaagaatggtggttcattg 1119
Query: 1251 tctgacaagatggatgaacttgcttgctttgctcctggtatgctggc 1297
||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 1120 tctgacaagatggatgagcttgcatgttttgcccctggtatgctggc 1166
Score = 446 bits (225), Expect = e-122
Identities = 381/433 (87%)
Strand = Plus / Plus
Query: 1336 aaattatgaatcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactc 1395
|||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||
Sbjct: 1208 aaattatgaatcttgcgaaagagcttgctcggacctgttataacttctaccaaacaactc 1267
Query: 1396 ccacgaagttggctggagaaaattattttttccatactggacaggacatgggtgtgggca 1455
| || ||||||||||| || |||||||||||||||||||||||||| ||| |||||||
Sbjct: 1268 ctacaaagttggctggggagaattattttttccatactggacaggatatgaacgtgggca 1327
Query: 1456 cgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttga 1515
| || ||||| ||| ||||||| |||||||| |||||||| |||||| ||||||| | |
Sbjct: 1328 catcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtggcgtctta 1387
Query: 1516 cggggaataaaacataccaagattgggggtgggacatattccaggcatttgagaagaact 1575
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1388 cggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaaaagaact 1447
Query: 1576 cccgcatagaatctggatatgtgggactgagagatgtgaacactggtgaaaaagacaaca 1635
|||||||||||||||| || || || |||||||||||||| ||||| || || || ||||
Sbjct: 1448 cccgcatagaatctggttacgttgggctgagagatgtgaatactggcgagaaggataaca 1507
Query: 1636 tgatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttctcccctc 1695
||||||| || |||||||| |||||||| || |||||||| ||||| || ||||| ||||
Sbjct: 1508 tgatgcaaagcttcttcctagcagagactctcaagtacctatacctcctgttctctcctc 1567
Query: 1696 catcagtcatatccttcgacgagtgggttttcaatactgaagctcacccattgagaattg 1755
||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||
Sbjct: 1568 catcagtcatatccttcgatgagtgggtcttcaataccgaagcccacccattgcgaattg 1627
Query: 1756 ttccagtaaatga 1768
|||| |||||||
Sbjct: 1628 ttcctttaaatga 1640
Score = 250 bits (126), Expect = 3e-063
Identities = 198/222 (89%)
Strand = Plus / Plus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 28 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 87
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 88 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 147
Query: 273 ctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaatcggttgcat 332
|||||| ||||||||||||| || ||||| ||||| || ||| | |||||| ||||| |
Sbjct: 148 ctcgtccgcgagtacgagtcagaaatttctcgattggatgataaagtaaatcagttgcgt 207
Query: 333 gaccagctaagaaaggctggagttaatctggatgaaaatcca 374
|||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 208 gaccagttaagaaaggctggagttcatctggatgaaaatcca 249
>dbj|AK060852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E10, full
insert sequence
Length = 1797
Score = 870 bits (439), Expect = 0.0
Identities = 734/831 (88%), Gaps = 1/831 (0%)
Strand = Plus / Plus
Query: 467 ccatgcttggaattcttatgttaagtatgcctggggaatggacgagcttcagccacaatc 526
||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 14 ccatgcttggaattcctatgtgaagtatgcctggggaatggatgaacttcagccacaatc 73
Query: 527 gaagaatggtatcaacagctttggtggtcttggagcaacccttgttgactcacttgatac 586
||||||||| |||| |||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 74 aaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggactcacttgatac 133
Query: 587 cctatacataatgggcctgaaagatgaatttcagaaagctagagactgggtggcggagtc 646
|| || ||||||||||| || ||||||||||||| || |||||||||||||| || ||
Sbjct: 134 actgtatataatgggcctaaaggatgaatttcagagggccagagactgggtggccgattc 193
Query: 647 attagactttgacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttgg 706
| || ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 194 actaagctttgacaaggattacgatgcaagtgtctttgaaacgaccataagagttgttgg 253
Query: 707 aggtctgcttagttcatacgatctatctggtgataaagtatttcttgataaggctaaaga 766
||| || || ||| |||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 254 aggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaaggccaaaga 313
Query: 767 tattacagatcgactcttacctgcttgggatacaacatctggcatcccttataatagaat 826
|||||| || || || ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 314 tattactgaccgtctactacctgcttgggatacaccatctggtatcccttataatagaat 373
Query: 827 aaacctagctcatggacgagcccataatcctggatggactaacggtgatagtatccttgc 886
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 374 caacctagctcatggacgagcccataatcctggatggaccaatggtgatagtatccttgc 433
Query: 887 agattctggtacggagcaacttgaattcatagctctttcacagaggactggagatcccaa 946
|||||||| ||||||||||||||||| |||||| | |||||||||||||| ||||||||
Sbjct: 434 tgattctggcacggagcaacttgaatttatagctttgtcacagaggactggtgatcccaa 493
Query: 947 ataccagcagaaggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatgg 1006
|| || || ||||| |||| ||||| | ||||||||| |||||||| ||||| |||||
Sbjct: 494 gtatcaacaaaaggcagagagtgtcatcagacagcttcagaagatatacccaagcgatgg 553
Query: 1007 tttactgcctatttacataaatcctcattctgggacagcatcatactcaactatcacatt 1066
||||| ||||| |||||||| |||||||| || || || || |||||||| || |||||
Sbjct: 554 cttactccctatatacataaaccctcattcaggaactgcgtcgtactcaacaattacatt 613
Query: 1067 tggtgctatgggagacagcttctacgaatatttgctcaaggtctggatccaggggaataa 1126
|||||| |||||||| ||||||||||| || ||||||||||| ||| |||||||||||||
Sbjct: 614 tggtgcaatgggagatagcttctacgagtacttgctcaaggtttgggtccaggggaataa 673
Query: 1127 aactgagcatgtaaaacactacagacaaatgtgggagacatcaatggaaggtctattaag 1186
||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 674 aactgagcatgtaaagcattacagacaaatgtgggagacatcaatggaaggcctactaag 733
Query: 1187 tttaaccaagaaaactacaccatctaattactactacatttgtgaaaagaatggtggctc 1246
|| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct: 734 cttgaccaa-aaaactacaccctctaattactactacatttgcgagaagaatggtggttc 792
Query: 1247 gttgtctgacaagatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 793 attgtctgacaagatggatgagcttgcatgttttgcccctggtatgctggc 843
Score = 438 bits (221), Expect = e-120
Identities = 380/433 (87%)
Strand = Plus / Plus
Query: 1336 aaattatgaatcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactc 1395
|||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||
Sbjct: 885 aaattatgaatcttgcgaaagagcttgctcggacctgttataacttctaccaaacaactc 944
Query: 1396 ccacgaagttggctggagaaaattattttttccatactggacaggacatgggtgtgggca 1455
| || ||||||||||| || |||||||||||||||||||||||||| ||| |||||||
Sbjct: 945 ctacaaagttggctggggagaattattttttccatactggacaggatatgaacgtgggca 1004
Query: 1456 cgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttga 1515
| || ||||| ||| ||||||| |||||||| |||||||| |||||| ||||||| | |
Sbjct: 1005 catcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtggcgtctta 1064
Query: 1516 cggggaataaaacataccaagattgggggtgggacatattccaggcatttgagaagaact 1575
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1065 cggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaaaagaact 1124
Query: 1576 cccgcatagaatctggatatgtgggactgagagatgtgaacactggtgaaaaagacaaca 1635
|||||||||||||||| || || || |||||||||||||| ||||| || || || ||||
Sbjct: 1125 cccgcatagaatctggttacgttgggctgagagatgtgaatactggcgagaaggataaca 1184
Query: 1636 tgatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttctcccctc 1695
||||||| || |||||||| |||||||| || |||||||| ||||| || ||||| ||||
Sbjct: 1185 tgatgcaaagcttcttcctagcagagactctcaagtacctatacctcctgttctctcctc 1244
Query: 1696 catcagtcatatccttcgacgagtgggttttcaatactgaagctcacccattgagaattg 1755
| ||||||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||
Sbjct: 1245 cgtcagtcatatccttcgatgagtgggtcttcaataccgaagcccacccattgcgaattg 1304
Query: 1756 ttccagtaaatga 1768
|||| |||||||
Sbjct: 1305 ttcctttaaatga 1317
>gb|CB639655.1|CB639655 OSJNEa11H15.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa11H15 5', mRNA sequence
Length = 606
Score = 250 bits (126), Expect = 3e-063
Identities = 198/222 (89%)
Strand = Plus / Plus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 160 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 219
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 220 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 279
Query: 273 ctcgtcagcgagtacgagtctgagatttcccgattagaagatgatataaatcggttgcat 332
|||||| ||||||||||||| || ||||| ||||| || ||| | |||||| ||||| |
Sbjct: 280 ctcgtccgcgagtacgagtcagaaatttctcgattggatgataaagtaaatcagttgcgt 339
Query: 333 gaccagctaagaaaggctggagttaatctggatgaaaatcca 374
|||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 340 gaccagttaagaaaggctggagttcatctggatgaaaatcca 381
Score = 186 bits (94), Expect = 4e-044
Identities = 169/194 (87%)
Strand = Plus / Plus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 412 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 471
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcagccacaatcgaag 530
||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct: 472 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcagccacaatcaaag 531
Query: 531 aatggtatcaacagctttggtggtcttggagcaacccttgttgactcacttgatacccta 590
|||||| |||| |||||||||||||| || ||||| ||||| |||||||||||||| ||
Sbjct: 532 aatggtgtcaatagctttggtggtctcggggcaactcttgtggactcacttgatacactg 591
Query: 591 tacataatgggcct 604
|| |||||||||||
Sbjct: 592 tatataatgggcct 605
>gb|AACV01010446.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010446, whole
genome shotgun sequence
Length = 57268
Score = 204 bits (103), Expect = 2e-049
Identities = 151/167 (90%)
Strand = Plus / Plus
Query: 699 gttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgataag 758
||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| |||
Sbjct: 20566 gttgttggaggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaag 20625
Query: 759 gctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatcccttat 818
|| ||||||||||| || || || ||||||||||||||||| ||||||| |||||||||
Sbjct: 20626 gccaaagatattactgaccgtctactacctgcttgggatacaccatctggtatcccttat 20685
Query: 819 aatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 20686 aatagaatcaacctagctcatggacgagcccataatcctggatggac 20732
Score = 182 bits (92), Expect = 6e-043
Identities = 146/164 (89%)
Strand = Plus / Plus
Query: 1449 gtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtgg 1508
|||||||| || ||||| ||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 23611 gtgggcacatcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtgg 23670
Query: 1509 cgcttgacggggaataaaacataccaagattgggggtgggacatattccaggcatttgag 1568
|| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23671 cgtcttacggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaa 23730
Query: 1569 aagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
||||||||||||||||||||||| || || || |||||||||||
Sbjct: 23731 aagaactcccgcatagaatctggttacgttgggctgagagatgt 23774
Score = 178 bits (90), Expect = 9e-042
Identities = 126/138 (91%)
Strand = Plus / Plus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 17510 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 17569
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 17570 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 17629
Query: 273 ctcgtcagcgagtacgag 290
|||||| |||||||||||
Sbjct: 17630 ctcgtccgcgagtacgag 17647
Score = 147 bits (74), Expect = 3e-032
Identities = 137/158 (86%)
Strand = Plus / Plus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| ||||| || || || ||||||||||| || |||||||| |||||||| || |||
Sbjct: 23877 gtgaatactggcgagaaggataacatgatgcaaagcttcttcctagcagagactctcaag 23936
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 23937 tacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttcaat 23996
Query: 1731 actgaagctcacccattgagaattgttccagtaaatga 1768
|| ||||| ||||||||| |||||||||| |||||||
Sbjct: 23997 accgaagcccacccattgcgaattgttcctttaaatga 24034
Score = 141 bits (71), Expect = 2e-030
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 1149 agacaaatgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacacca 1208
||||||||||||||||||||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 22907 agacaaatgtgggagacatcaatggaaggcctactaagcttgaccaaaaaaactacaccc 22966
Query: 1209 tctaattactactacatttgtgaaaagaatggtggctcgttgtctgacaag 1259
|||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 22967 tctaattactactacatttgcgagaagaatggtggttcattgtctgacaag 23017
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 19742 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 19801
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 19802 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 19847
Score = 105 bits (53), Expect = 1e-019
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 21213 ggtgatagtatccttgctgattctggcacggagcaacttgaatttatagctttgtcacag 21272
Query: 930 aggactggagatcccaa 946
|||||||| ||||||||
Sbjct: 21273 aggactggtgatcccaa 21289
Score = 103 bits (52), Expect = 4e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
|||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 23434 agcttgctcggacctgttataacttctaccaaacaactcctacaaagttggctggggaga 23493
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 23494 attattttttccatactggacagg 23517
Score = 95.6 bits (48), Expect = 1e-016
Identities = 105/124 (84%)
Strand = Plus / Plus
Query: 958 aggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggtttactgccta 1017
|||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 22382 aggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggcttactcccta 22441
Query: 1018 tttacataaatcctcattctgggacagcatcatactcaactatcacatttggtgctatgg 1077
| |||||||| |||||||| || || || || |||||||| || ||||||||||| ||||
Sbjct: 22442 tatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggtgcaatgg 22501
Query: 1078 gaga 1081
||||
Sbjct: 22502 gaga 22505
Score = 95.6 bits (48), Expect = 1e-016
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 19535 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 19594
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcag 518
||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 19595 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcag 19642
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 22720 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 22779
Query: 1142 acactacag 1150
|| |||||
Sbjct: 22780 gcattacag 22788
Score = 69.9 bits (35), Expect = 6e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
||||||||| || ||| || ||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 20350 ctgggtggccgattcactaagctttgacaaggattacgatgcaagtgtctttgaaacgac 20409
Query: 692 cataagg 698
|||||||
Sbjct: 20410 cataagg 20416
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 340 taagaaaggctggagttaatctggatgaaaatcca 374
||||||||||||||||| |||||||||||||||||
Sbjct: 19470 taagaaaggctggagttcatctggatgaaaatcca 19504
Score = 48.1 bits (24), Expect = 0.021
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 23121 agatggatgagcttgcatgttttgcccctggtatgctggc 23160
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 204 bits (103), Expect = 2e-049
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 699 gttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgataag 758
||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| |||
Sbjct: 555629 gttgttggaggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaag 555570
Query: 759 gctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatcccttat 818
|| ||||||||||| || || || ||||||||||||||||| ||||||| |||||||||
Sbjct: 555569 gccaaagatattactgaccgtctactacctgcttgggatacaccatctggtatcccttat 555510
Query: 819 aatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 555509 aatagaatcaacctagctcatggacgagcccataatcctggatggac 555463
Score = 182 bits (92), Expect = 6e-043
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 1449 gtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtgg 1508
|||||||| || ||||| ||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 552584 gtgggcacatcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtgg 552525
Query: 1509 cgcttgacggggaataaaacataccaagattgggggtgggacatattccaggcatttgag 1568
|| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 552524 cgtcttacggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaa 552465
Query: 1569 aagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
||||||||||||||||||||||| || || || |||||||||||
Sbjct: 552464 aagaactcccgcatagaatctggttacgttgggctgagagatgt 552421
Score = 178 bits (90), Expect = 9e-042
Identities = 126/138 (91%)
Strand = Plus / Minus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 558685 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 558626
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 558625 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 558566
Query: 273 ctcgtcagcgagtacgag 290
|||||| |||||||||||
Sbjct: 558565 ctcgtccgcgagtacgag 558548
Score = 147 bits (74), Expect = 3e-032
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| ||||| || || || ||||||||||| || |||||||| |||||||| || |||
Sbjct: 552318 gtgaatactggcgagaaggataacatgatgcaaagcttcttcctagcagagactctcaag 552259
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 552258 tacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttcaat 552199
Query: 1731 actgaagctcacccattgagaattgttccagtaaatga 1768
|| ||||| ||||||||| |||||||||| |||||||
Sbjct: 552198 accgaagcccacccattgcgaattgttcctttaaatga 552161
Score = 141 bits (71), Expect = 2e-030
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 1149 agacaaatgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacacca 1208
||||||||||||||||||||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 553288 agacaaatgtgggagacatcaatggaaggcctactaagcttgaccaaaaaaactacaccc 553229
Query: 1209 tctaattactactacatttgtgaaaagaatggtggctcgttgtctgacaag 1259
|||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 553228 tctaattactactacatttgcgagaagaatggtggttcattgtctgacaag 553178
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 556453 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 556394
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 556393 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 556348
Score = 105 bits (53), Expect = 1e-019
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 554982 ggtgatagtatccttgctgattctggcacggagcaacttgaatttatagctttgtcacag 554923
Query: 930 aggactggagatcccaa 946
|||||||| ||||||||
Sbjct: 554922 aggactggtgatcccaa 554906
Score = 103 bits (52), Expect = 4e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
|||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 552761 agcttgctcggacctgttataacttctaccaaacaactcctacaaagttggctggggaga 552702
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 552701 attattttttccatactggacagg 552678
Score = 95.6 bits (48), Expect = 1e-016
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 556660 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 556601
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcag 518
||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 556600 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcag 556553
Score = 95.6 bits (48), Expect = 1e-016
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 958 aggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggtttactgccta 1017
|||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 553813 aggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggcttactcccta 553754
Query: 1018 tttacataaatcctcattctgggacagcatcatactcaactatcacatttggtgctatgg 1077
| |||||||| |||||||| || || || || |||||||| || ||||||||||| ||||
Sbjct: 553753 tatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggtgcaatgg 553694
Query: 1078 gaga 1081
||||
Sbjct: 553693 gaga 553690
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 553475 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 553416
Query: 1142 acactacag 1150
|| |||||
Sbjct: 553415 gcattacag 553407
Score = 69.9 bits (35), Expect = 6e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
||||||||| || ||| || ||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 555845 ctgggtggccgattcactaagctttgacaaggattacgatgcaagtgtctttgaaacgac 555786
Query: 692 cataagg 698
|||||||
Sbjct: 555785 cataagg 555779
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 340 taagaaaggctggagttaatctggatgaaaatcca 374
||||||||||||||||| |||||||||||||||||
Sbjct: 556725 taagaaaggctggagttcatctggatgaaaatcca 556691
Score = 48.1 bits (24), Expect = 0.021
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 553074 agatggatgagcttgcatgttttgcccctggtatgctggc 553035
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 204 bits (103), Expect = 2e-049
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 699 gttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgataag 758
||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| |||
Sbjct: 8370524 gttgttggaggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaag 8370465
Query: 759 gctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatcccttat 818
|| ||||||||||| || || || ||||||||||||||||| ||||||| |||||||||
Sbjct: 8370464 gccaaagatattactgaccgtctactacctgcttgggatacaccatctggtatcccttat 8370405
Query: 819 aatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 8370404 aatagaatcaacctagctcatggacgagcccataatcctggatggac 8370358
Score = 182 bits (92), Expect = 6e-043
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 1449 gtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtgg 1508
|||||||| || ||||| ||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 8367479 gtgggcacatcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtgg 8367420
Query: 1509 cgcttgacggggaataaaacataccaagattgggggtgggacatattccaggcatttgag 1568
|| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8367419 cgtcttacggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaa 8367360
Query: 1569 aagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
||||||||||||||||||||||| || || || |||||||||||
Sbjct: 8367359 aagaactcccgcatagaatctggttacgttgggctgagagatgt 8367316
Score = 178 bits (90), Expect = 9e-042
Identities = 126/138 (91%)
Strand = Plus / Minus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 8373580 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 8373521
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 8373520 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 8373461
Query: 273 ctcgtcagcgagtacgag 290
|||||| |||||||||||
Sbjct: 8373460 ctcgtccgcgagtacgag 8373443
Score = 147 bits (74), Expect = 3e-032
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| ||||| || || || ||||||||||| || |||||||| |||||||| || |||
Sbjct: 8367213 gtgaatactggcgagaaggataacatgatgcaaagcttcttcctagcagagactctcaag 8367154
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 8367153 tacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttcaat 8367094
Query: 1731 actgaagctcacccattgagaattgttccagtaaatga 1768
|| ||||| ||||||||| |||||||||| |||||||
Sbjct: 8367093 accgaagcccacccattgcgaattgttcctttaaatga 8367056
Score = 141 bits (71), Expect = 2e-030
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 1149 agacaaatgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacacca 1208
||||||||||||||||||||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 8368183 agacaaatgtgggagacatcaatggaaggcctactaagcttgaccaaaaaaactacaccc 8368124
Query: 1209 tctaattactactacatttgtgaaaagaatggtggctcgttgtctgacaag 1259
|||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 8368123 tctaattactactacatttgcgagaagaatggtggttcattgtctgacaag 8368073
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 8371348 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 8371289
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 8371288 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 8371243
Score = 105 bits (53), Expect = 1e-019
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 8369877 ggtgatagtatccttgctgattctggcacggagcaacttgaatttatagctttgtcacag 8369818
Query: 930 aggactggagatcccaa 946
|||||||| ||||||||
Sbjct: 8369817 aggactggtgatcccaa 8369801
Score = 103 bits (52), Expect = 4e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
|||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 8367656 agcttgctcggacctgttataacttctaccaaacaactcctacaaagttggctggggaga 8367597
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 8367596 attattttttccatactggacagg 8367573
Score = 95.6 bits (48), Expect = 1e-016
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 8371555 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 8371496
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcag 518
||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 8371495 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcag 8371448
Score = 95.6 bits (48), Expect = 1e-016
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 958 aggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggtttactgccta 1017
|||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 8368708 aggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggcttactcccta 8368649
Query: 1018 tttacataaatcctcattctgggacagcatcatactcaactatcacatttggtgctatgg 1077
| |||||||| |||||||| || || || || |||||||| || ||||||||||| ||||
Sbjct: 8368648 tatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggtgcaatgg 8368589
Query: 1078 gaga 1081
||||
Sbjct: 8368588 gaga 8368585
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 8368370 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 8368311
Query: 1142 acactacag 1150
|| |||||
Sbjct: 8368310 gcattacag 8368302
Score = 69.9 bits (35), Expect = 6e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
||||||||| || ||| || ||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 8370740 ctgggtggccgattcactaagctttgacaaggattacgatgcaagtgtctttgaaacgac 8370681
Query: 692 cataagg 698
|||||||
Sbjct: 8370680 cataagg 8370674
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 340 taagaaaggctggagttaatctggatgaaaatcca 374
||||||||||||||||| |||||||||||||||||
Sbjct: 8371620 taagaaaggctggagttcatctggatgaaaatcca 8371586
Score = 48.1 bits (24), Expect = 0.021
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 8367969 agatggatgagcttgcatgttttgcccctggtatgctggc 8367930
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 204 bits (103), Expect = 2e-049
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 699 gttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgataag 758
||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| |||
Sbjct: 27514623 gttgttggaggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaag 27514564
Query: 759 gctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatcccttat 818
|| ||||||||||| || || || ||||||||||||||||| ||||||| |||||||||
Sbjct: 27514563 gccaaagatattactgaccgtctactacctgcttgggatacaccatctggtatcccttat 27514504
Query: 819 aatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 27514503 aatagaatcaacctagctcatggacgagcccataatcctggatggac 27514457
Score = 182 bits (92), Expect = 6e-043
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 1449 gtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtgg 1508
|||||||| || ||||| ||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 27511578 gtgggcacatcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtgg 27511519
Query: 1509 cgcttgacggggaataaaacataccaagattgggggtgggacatattccaggcatttgag 1568
|| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27511518 cgtcttacggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaa 27511459
Query: 1569 aagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
||||||||||||||||||||||| || || || |||||||||||
Sbjct: 27511458 aagaactcccgcatagaatctggttacgttgggctgagagatgt 27511415
Score = 178 bits (90), Expect = 9e-042
Identities = 126/138 (91%)
Strand = Plus / Minus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 27517679 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 27517620
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 27517619 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 27517560
Query: 273 ctcgtcagcgagtacgag 290
|||||| |||||||||||
Sbjct: 27517559 ctcgtccgcgagtacgag 27517542
Score = 147 bits (74), Expect = 3e-032
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| ||||| || || || ||||||||||| || |||||||| |||||||| || |||
Sbjct: 27511312 gtgaatactggcgagaaggataacatgatgcaaagcttcttcctagcagagactctcaag 27511253
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 27511252 tacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttcaat 27511193
Query: 1731 actgaagctcacccattgagaattgttccagtaaatga 1768
|| ||||| ||||||||| |||||||||| |||||||
Sbjct: 27511192 accgaagcccacccattgcgaattgttcctttaaatga 27511155
Score = 141 bits (71), Expect = 2e-030
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 1149 agacaaatgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacacca 1208
||||||||||||||||||||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 27512282 agacaaatgtgggagacatcaatggaaggcctactaagcttgaccaaaaaaactacaccc 27512223
Query: 1209 tctaattactactacatttgtgaaaagaatggtggctcgttgtctgacaag 1259
|||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 27512222 tctaattactactacatttgcgagaagaatggtggttcattgtctgacaag 27512172
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 27515447 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 27515388
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 27515387 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 27515342
Score = 105 bits (53), Expect = 1e-019
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 27513976 ggtgatagtatccttgctgattctggcacggagcaacttgaatttatagctttgtcacag 27513917
Query: 930 aggactggagatcccaa 946
|||||||| ||||||||
Sbjct: 27513916 aggactggtgatcccaa 27513900
Score = 103 bits (52), Expect = 4e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
|||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 27511755 agcttgctcggacctgttataacttctaccaaacaactcctacaaagttggctggggaga 27511696
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 27511695 attattttttccatactggacagg 27511672
Score = 95.6 bits (48), Expect = 1e-016
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 27515654 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 27515595
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcag 518
||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 27515594 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcag 27515547
Score = 95.6 bits (48), Expect = 1e-016
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 958 aggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggtttactgccta 1017
|||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27512807 aggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggcttactcccta 27512748
Query: 1018 tttacataaatcctcattctgggacagcatcatactcaactatcacatttggtgctatgg 1077
| |||||||| |||||||| || || || || |||||||| || ||||||||||| ||||
Sbjct: 27512747 tatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggtgcaatgg 27512688
Query: 1078 gaga 1081
||||
Sbjct: 27512687 gaga 27512684
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 27512469 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 27512410
Query: 1142 acactacag 1150
|| |||||
Sbjct: 27512409 gcattacag 27512401
Score = 69.9 bits (35), Expect = 6e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
||||||||| || ||| || ||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 27514839 ctgggtggccgattcactaagctttgacaaggattacgatgcaagtgtctttgaaacgac 27514780
Query: 692 cataagg 698
|||||||
Sbjct: 27514779 cataagg 27514773
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 340 taagaaaggctggagttaatctggatgaaaatcca 374
||||||||||||||||| |||||||||||||||||
Sbjct: 27515719 taagaaaggctggagttcatctggatgaaaatcca 27515685
Score = 48.1 bits (24), Expect = 0.021
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 27512068 agatggatgagcttgcatgttttgcccctggtatgctggc 27512029
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09,
complete sequence
Length = 152732
Score = 204 bits (103), Expect = 2e-049
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 699 gttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgataag 758
||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| |||
Sbjct: 62853 gttgttggaggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaag 62794
Query: 759 gctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatcccttat 818
|| ||||||||||| || || || ||||||||||||||||| ||||||| |||||||||
Sbjct: 62793 gccaaagatattactgaccgtctactacctgcttgggatacaccatctggtatcccttat 62734
Query: 819 aatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 62733 aatagaatcaacctagctcatggacgagcccataatcctggatggac 62687
Score = 182 bits (92), Expect = 6e-043
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 1449 gtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtgg 1508
|||||||| || ||||| ||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 59808 gtgggcacatcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtgg 59749
Query: 1509 cgcttgacggggaataaaacataccaagattgggggtgggacatattccaggcatttgag 1568
|| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 59748 cgtcttacggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaa 59689
Query: 1569 aagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
||||||||||||||||||||||| || || || |||||||||||
Sbjct: 59688 aagaactcccgcatagaatctggttacgttgggctgagagatgt 59645
Score = 178 bits (90), Expect = 9e-042
Identities = 126/138 (91%)
Strand = Plus / Minus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 65909 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 65850
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 65849 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 65790
Query: 273 ctcgtcagcgagtacgag 290
|||||| |||||||||||
Sbjct: 65789 ctcgtccgcgagtacgag 65772
Score = 147 bits (74), Expect = 3e-032
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| ||||| || || || ||||||||||| || |||||||| |||||||| || |||
Sbjct: 59542 gtgaatactggcgagaaggataacatgatgcaaagcttcttcctagcagagactctcaag 59483
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 59482 tacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttcaat 59423
Query: 1731 actgaagctcacccattgagaattgttccagtaaatga 1768
|| ||||| ||||||||| |||||||||| |||||||
Sbjct: 59422 accgaagcccacccattgcgaattgttcctttaaatga 59385
Score = 141 bits (71), Expect = 2e-030
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 1149 agacaaatgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacacca 1208
||||||||||||||||||||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 60512 agacaaatgtgggagacatcaatggaaggcctactaagcttgaccaaaaaaactacaccc 60453
Query: 1209 tctaattactactacatttgtgaaaagaatggtggctcgttgtctgacaag 1259
|||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 60452 tctaattactactacatttgcgagaagaatggtggttcattgtctgacaag 60402
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 63677 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 63618
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 63617 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 63572
Score = 105 bits (53), Expect = 1e-019
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 62206 ggtgatagtatccttgctgattctggcacggagcaacttgaatttatagctttgtcacag 62147
Query: 930 aggactggagatcccaa 946
|||||||| ||||||||
Sbjct: 62146 aggactggtgatcccaa 62130
Score = 103 bits (52), Expect = 4e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
|||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 59985 agcttgctcggacctgttataacttctaccaaacaactcctacaaagttggctggggaga 59926
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 59925 attattttttccatactggacagg 59902
Score = 95.6 bits (48), Expect = 1e-016
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 63884 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 63825
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcag 518
||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 63824 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcag 63777
Score = 95.6 bits (48), Expect = 1e-016
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 958 aggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggtttactgccta 1017
|||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 61037 aggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggcttactcccta 60978
Query: 1018 tttacataaatcctcattctgggacagcatcatactcaactatcacatttggtgctatgg 1077
| |||||||| |||||||| || || || || |||||||| || ||||||||||| ||||
Sbjct: 60977 tatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggtgcaatgg 60918
Query: 1078 gaga 1081
||||
Sbjct: 60917 gaga 60914
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 60699 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 60640
Query: 1142 acactacag 1150
|| |||||
Sbjct: 60639 gcattacag 60631
Score = 69.9 bits (35), Expect = 6e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
||||||||| || ||| || ||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 63069 ctgggtggccgattcactaagctttgacaaggattacgatgcaagtgtctttgaaacgac 63010
Query: 692 cataagg 698
|||||||
Sbjct: 63009 cataagg 63003
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 340 taagaaaggctggagttaatctggatgaaaatcca 374
||||||||||||||||| |||||||||||||||||
Sbjct: 63949 taagaaaggctggagttcatctggatgaaaatcca 63915
Score = 48.1 bits (24), Expect = 0.021
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 60298 agatggatgagcttgcatgttttgcccctggtatgctggc 60259
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 204 bits (103), Expect = 2e-049
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 699 gttgttggaggtctgcttagttcatacgatctatctggtgataaagtatttcttgataag 758
||||||||||| || || ||| |||| |||||||||||||| |||||||||||||| |||
Sbjct: 30659122 gttgttggaggcctcctcagtgcatatgatctatctggtgacaaagtatttcttgagaag 30659063
Query: 759 gctaaagatattacagatcgactcttacctgcttgggatacaacatctggcatcccttat 818
|| ||||||||||| || || || ||||||||||||||||| ||||||| |||||||||
Sbjct: 30659062 gccaaagatattactgaccgtctactacctgcttgggatacaccatctggtatcccttat 30659003
Query: 819 aatagaataaacctagctcatggacgagcccataatcctggatggac 865
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 30659002 aatagaatcaacctagctcatggacgagcccataatcctggatggac 30658956
Score = 182 bits (92), Expect = 6e-043
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 1449 gtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgtacctgtgg 1508
|||||||| || ||||| ||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 30656077 gtgggcacatcatggaatatcctgagacctgagactgtcgaatcacttatgtacttgtgg 30656018
Query: 1509 cgcttgacggggaataaaacataccaagattgggggtgggacatattccaggcatttgag 1568
|| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 30656017 cgtcttacggggaacaaaacataccaagactgggggtgggacatattccaggcatttgaa 30655958
Query: 1569 aagaactcccgcatagaatctggatatgtgggactgagagatgt 1612
||||||||||||||||||||||| || || || |||||||||||
Sbjct: 30655957 aagaactcccgcatagaatctggttacgttgggctgagagatgt 30655914
Score = 178 bits (90), Expect = 9e-042
Identities = 126/138 (91%)
Strand = Plus / Minus
Query: 153 tcgtcgtcggggacctggcggtacctgaacccggcgtactacctcaagcggcccaagcgc 212
|||||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 30662178 tcgtcgtcgggggcgtggcggtacctcaacccggcgtattacctcaagcggccgaagcgc 30662119
Query: 213 ctggcgctcctcttcttcctcttcgtcgcagccaccttcgccttctgggaccgccagtcg 272
|| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 30662118 ctcgccctcctcttcttcgtcttcgtcgccgccaccttcgccttctgggatcgacagtcg 30662059
Query: 273 ctcgtcagcgagtacgag 290
|||||| |||||||||||
Sbjct: 30662058 ctcgtccgcgagtacgag 30662041
Score = 147 bits (74), Expect = 3e-032
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
||||| ||||| || || || ||||||||||| || |||||||| |||||||| || |||
Sbjct: 30655811 gtgaatactggcgagaaggataacatgatgcaaagcttcttcctagcagagactctcaag 30655752
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 30655751 tacctatacctcctgttctctcctccatcagtcatatccttcgatgagtgggtcttcaat 30655692
Query: 1731 actgaagctcacccattgagaattgttccagtaaatga 1768
|| ||||| ||||||||| |||||||||| |||||||
Sbjct: 30655691 accgaagcccacccattgcgaattgttcctttaaatga 30655654
Score = 141 bits (71), Expect = 2e-030
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 1149 agacaaatgtgggagacatcaatggaaggtctattaagtttaaccaagaaaactacacca 1208
||||||||||||||||||||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 30656781 agacaaatgtgggagacatcaatggaaggcctactaagcttgaccaaaaaaactacaccc 30656722
Query: 1209 tctaattactactacatttgtgaaaagaatggtggctcgttgtctgacaag 1259
|||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct: 30656721 tctaattactactacatttgcgagaagaatggtggttcattgtctgacaag 30656671
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 30659946 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 30659887
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 30659886 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 30659841
Score = 105 bits (53), Expect = 1e-019
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 30658475 ggtgatagtatccttgctgattctggcacggagcaacttgaatttatagctttgtcacag 30658416
Query: 930 aggactggagatcccaa 946
|||||||| ||||||||
Sbjct: 30658415 aggactggtgatcccaa 30658399
Score = 103 bits (52), Expect = 4e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 1357 agcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggagaaa 1416
|||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 30656254 agcttgctcggacctgttataacttctaccaaacaactcctacaaagttggctggggaga 30656195
Query: 1417 attattttttccatactggacagg 1440
||||||||||||||||||||||||
Sbjct: 30656194 attattttttccatactggacagg 30656171
Score = 95.6 bits (48), Expect = 1e-016
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 411 gtagaaattgatcctgtcaataatgaaaaacgggaaaaagttaaagaggcaatgctccat 470
||||||||||||||| | |||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 30660153 gtagaaattgatcctattaataatgaaaggagagaaaaggttaaggaggctatggcccat 30660094
Query: 471 gcttggaattcttatgttaagtatgcctggggaatggacgagcttcag 518
||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 30660093 gcttggaattcctatgtgaagtatgcctggggaatggatgaacttcag 30660046
Score = 95.6 bits (48), Expect = 1e-016
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 958 aggcggagaacgtcattaaacagcttcaaaagatatatccaagtgatggtttactgccta 1017
|||| ||||| ||||| | ||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 30657306 aggcagagaatgtcatcagacagcttcagaagatatacccaagcgatggcttactcccta 30657247
Query: 1018 tttacataaatcctcattctgggacagcatcatactcaactatcacatttggtgctatgg 1077
| |||||||| |||||||| || || || || |||||||| || ||||||||||| ||||
Sbjct: 30657246 tatacataaaccctcattcaggaactgcgtcgtactcaacaattacatttggtgcaatgg 30657187
Query: 1078 gaga 1081
||||
Sbjct: 30657186 gaga 30657183
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 30656968 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 30656909
Query: 1142 acactacag 1150
|| |||||
Sbjct: 30656908 gcattacag 30656900
Score = 69.9 bits (35), Expect = 6e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 632 ctgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaaacgac 691
||||||||| || ||| || ||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 30659338 ctgggtggccgattcactaagctttgacaaggattacgatgcaagtgtctttgaaacgac 30659279
Query: 692 cataagg 698
|||||||
Sbjct: 30659278 cataagg 30659272
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 340 taagaaaggctggagttaatctggatgaaaatcca 374
||||||||||||||||| |||||||||||||||||
Sbjct: 30660218 taagaaaggctggagttcatctggatgaaaatcca 30660184
Score = 48.1 bits (24), Expect = 0.021
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggc 1297
|||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 30656567 agatggatgagcttgcatgttttgcccctggtatgctggc 30656528
>gb|AQ686374.1|AQ686374 nbxb0069K13f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0069K13f, DNA sequence
Length = 419
Score = 127 bits (64), Expect = 3e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 1649 cttcctggcagagacgctgaagtacctgtacctacttttctcccctccatcagtcatatc 1708
|||||| |||||||| || |||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 1 cttcctagcagagactctcaagtacctatacctcctgttctctcctccatcagtcatatc 60
Query: 1709 cttcgacgagtgggttttcaatactgaagctcacccattgagaattgttccagtaaatga 1768
|||||| |||||||| |||||||| ||||| ||||||||| |||||||||| |||||||
Sbjct: 61 cttcgatgagtgggtcttcaataccgaagcccacccattgcgaattgttcctttaaatga 120
>gb|AQ861378.1|AQ861378 nbeb0016F04r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016F04r, DNA sequence
Length = 768
Score = 115 bits (58), Expect = 1e-022
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 516 cagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacccttgttgac 575
||||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| |||
Sbjct: 203 cagccacaatcaaagaatggtgtcaatagctttggtggtctcggggcaactcttgtggac 262
Query: 576 tcacttgataccctatacataatgggcctgaaagatgaatttcaga 621
||||||||||| || || ||||||||||| || |||||||||||||
Sbjct: 263 tcacttgatacactgtatataatgggcctaaaggatgaatttcaga 308
Score = 54.0 bits (27), Expect = 3e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 476 gaattcttatgttaagtatgcctggggaatggacgagcttcag 518
|||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 61 gaattcctatgtgaagtatgcctggggaatggatgaacttcag 103
>gb|AQ163619.1|AQ163619 nbxb0007O08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0007O08f, DNA sequence
Length = 609
Score = 89.7 bits (45), Expect = 6e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1082 cagcttctacgaatatttgctcaaggtctggatccaggggaataaaactgagcatgtaaa 1141
|||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 221 cagcttctacgagtacttgctcaaggtttgggtccaggggaataaaactgagcatgtaaa 162
Query: 1142 acactacag 1150
|| |||||
Sbjct: 161 gcattacag 153
Score = 60.0 bits (30), Expect = 6e-006
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1008 ttactgcctatttacataaatcctcattctgggacagcatcatactcaactatcacattt 1067
||||| ||||| |||||||| |||||||| || || || || |||||||| || ||||||
Sbjct: 509 ttactccctatatacataaaccctcattcaggaactgcgtcgtactcaacaattacattt 450
Query: 1068 ggtgctatgggaga 1081
||||| ||||||||
Sbjct: 449 ggtgcaatgggaga 436
Score = 58.0 bits (29), Expect = 2e-005
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1149 agacaaatgtgggagacatcaatggaagg 1177
|||||||||||||||||||||||||||||
Sbjct: 34 agacaaatgtgggagacatcaatggaagg 6
>dbj|AK120963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039P07, full
insert sequence
Length = 2736
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 53 ggcgctcctcttcttcctcttc 74
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0560B06
Length = 161720
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 111523 tcggcggtcgtcttcctcgtcg 111502
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0043B10
Length = 167399
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 67437 tcggcggtcgtcttcctcgtcg 67416
>gb|AACV01001110.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001110, whole
genome shotgun sequence
Length = 65679
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 2060 tcggcggtcgtcttcctcgtcg 2039
>gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015343, whole
genome shotgun sequence
Length = 76647
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 12960 ggcgctcctcttcttcctcttc 12981
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 15093253 tcggcggtcgtcttcctcgtcg 15093232
>ref|NM_193816.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 777
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 528 tcggcggtcgtcttcctcgtcg 507
>ref|NT_079947.2| Oryza sativa (japonica cultivar-group)
Length = 1767736
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 121718 tcggcggtcgtcttcctcgtcg 121697
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1715_A07
Length = 130907
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 54378 ggcgctcctcttcttcctcttc 54357
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 5143736 ggcgctcctcttcttcctcttc 5143715
>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1329D01
Length = 141938
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 121718 tcggcggtcgtcttcctcgtcg 121697
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 2255904 ggcgctcctcttcttcctcttc 2255883
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 3380248 tcggcggtcgtcttcctcgtcg 3380227
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 5072653 ggcgctcctcttcttcctcttc 5072632
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 14996743 tcggcggtcgtcttcctcgtcg 14996722
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 137 tcggcggtcgtcttcctcgtcg 158
||||||||||||||||||||||
Sbjct: 15095471 tcggcggtcgtcttcctcgtcg 15095450
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 44.1 bits (22), Expect = 0.33
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 215 ggcgctcctcttcttcctcttc 236
||||||||||||||||||||||
Sbjct: 5187664 ggcgctcctcttcttcctcttc 5187643
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,370,156
Number of Sequences: 438736
Number of extensions: 3370156
Number of successful extensions: 24235
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23651
Number of HSP's gapped (non-prelim): 583
length of query: 2249
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 2227
effective length of database: 2,790,767,724
effective search space: 6215039721348
effective search space used: 6215039721348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)