BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK062471.1| Oryza sativa (japonica cultivar-group) cDNA... 325 1e-086
gb|CB672452.1|CB672452 OSJNEe06H22.r OSJNEe Oryza sativa (j... 317 3e-084
gb|CB676813.1|CB676813 OSJNEe13E16.r OSJNEe Oryza sativa (j... 242 2e-061
gb|CA998416.1|CA998416 S345D_E12 Rice cold stress germinati... 220 6e-055
gb|CB672451.1|CB672451 OSJNEe06H22.f OSJNEe Oryza sativa (j... 190 5e-046
gb|CB650175.1|CB650175 OSJNEb14H19.f OSJNEb Oryza sativa (j... 184 3e-044
gb|CB650176.1|CB650176 OSJNEb14H19.r OSJNEb Oryza sativa (j... 176 8e-042
gb|CV723498.1|CV723498 root--03-M05.g1 Rice root lambda pha... 159 2e-036
dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA... 141 4e-031
ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA 141 4e-031
gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbar... 107 6e-021
gb|AACV01006501.1| Oryza sativa (japonica cultivar-group) c... 107 6e-021
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 107 6e-021
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 107 6e-021
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 107 6e-021
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 107 6e-021
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 107 6e-021
dbj|AG212909.1| Oryza sativa (japonica cultivar-group) DNA,... 88 6e-015
dbj|AG208412.1| Oryza sativa (japonica cultivar-group) DNA,... 84 9e-014
dbj|AG022717.1| Oryza sativa (japonica cultivar-group) DNA,... 84 9e-014
dbj|AP003818.2| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
dbj|AP003813.4| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
gb|AACV01017045.1| Oryza sativa (japonica cultivar-group) c... 72 3e-010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 72 3e-010
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
gb|CB643141.1|CB643141 OSJNEb03K21.r OSJNEb Oryza sativa (j... 70 1e-009
gb|CB649773.1|CB649773 OSJNEb13O11.r OSJNEb Oryza sativa (j... 70 1e-009
gb|CB651549.1|CB651549 OSJNEb16I21.r OSJNEb Oryza sativa (j... 70 1e-009
gb|CB669652.1|CB669652 OSJNEe02E22.r OSJNEe Oryza sativa (j... 70 1e-009
gb|CB669722.1|CB669722 OSJNEe02G23.f OSJNEe Oryza sativa (j... 70 1e-009
gb|CB678078.1|CB678078 OSJNEe15K07.r OSJNEe Oryza sativa (j... 70 1e-009
dbj|AK061612.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AK065240.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
gb|AQ575769.1|AQ575769 nbxb0087L14f CUGI Rice BAC Library O... 54 8e-005
gb|D46199.1|D46199 RICS10723A Rice green shoot Oryza sativa... 54 8e-005
gb|CB641393.1|CB641393 OSJNEb01A03.r OSJNEb Oryza sativa (j... 54 8e-005
gb|CB661902.1|CB661902 OSJNEd05F11.r OSJNEd Oryza sativa (j... 54 8e-005
gb|CB664093.1|CB664093 OSJNEd09J24.r OSJNEd Oryza sativa (j... 54 8e-005
gb|CB668680.1|CB668680 OSJNEd16K11.f OSJNEd Oryza sativa (j... 54 8e-005
gb|CB668681.1|CB668681 OSJNEd16K11.r OSJNEd Oryza sativa (j... 54 8e-005
gb|CB670940.1|CB670940 OSJNEe04E10.r OSJNEe Oryza sativa (j... 54 8e-005
gb|CB674069.1|CB674069 OSJNEe08P02.r OSJNEe Oryza sativa (j... 54 8e-005
gb|CB682403.1|CB682403 OSJNEf09L04.f OSJNEf Oryza sativa (j... 54 8e-005
dbj|AK072576.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
gb|AACV01009093.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 54 8e-005
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromoso... 54 8e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|CF323512.1|CF323512 HDN--04-A19.g1 OsHDAC1-overexpressin... 52 3e-004
ref|XM_471515.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
gb|CB645438.1|CB645438 OSJNEb07B22.r OSJNEb Oryza sativa (j... 48 0.005
gb|CF277012.1|CF277012 14ETL--02-G05.b1 Rice etiolated leaf... 48 0.005
gb|AC123516.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
ref|NT_107123.1| Oryza sativa (japonica cultivar-group) 46 0.019
gb|AACV01022284.1| Oryza sativa (japonica cultivar-group) c... 46 0.019
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.019
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
gb|CB663307.1|CB663307 OSJNEd08B16.r OSJNEd Oryza sativa (j... 44 0.075
dbj|AK099668.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.29
dbj|AK103721.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.29
dbj|AK119404.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.29
emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC O... 42 0.29
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 42 0.29
gb|AACV01023900.1| Oryza sativa (japonica cultivar-group) c... 42 0.29
gb|AACV01023904.1| Oryza sativa (japonica cultivar-group) c... 42 0.29
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.29
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.29
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.29
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.29
>dbj|AK062471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E11, full
insert sequence
Length = 1212
Score = 325 bits (164), Expect = 1e-086
Identities = 425/512 (83%)
Strand = Plus / Plus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 213 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 272
Query: 61 agcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaagg 120
|| || ||||| |||||||||||||||||||||||| | |||| ||||| || | ||
Sbjct: 273 agtgatgtggtcgagatggcaagttgtgctccactcttcataaatgacaacgatcgcggg 332
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattactgg 180
| | |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 333 tttagtccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactgg 392
Query: 181 atgctgcactttttcaaagattcaagcagcgccacacttcatccgtccactattcaacta 240
||||| ||||| ||||| || ||||| | || ||||||||||| | || ||||| |
Sbjct: 393 atgctacacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtg 452
Query: 241 ccgaactacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaac 300
| ||||| || ||| ||| | |||||||| |||||||| | || | | ||||| |||
Sbjct: 453 tcaaactatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaac 512
Query: 301 acttacatgaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatct 360
|||||| |||||||||||||||| |||||||| | ||||||||| | ||| |||||| ||
Sbjct: 513 acttacttgaaaataaaggttgtcaattttggtaacaaagctgtgaatcttaatatagct 572
Query: 361 gtaactgggttggaaactgatattcagacatttggatccataaagacggttctcacgtcg 420
||| |||| | || | || |||||| ||| || |||||||||||||| || || ||
Sbjct: 573 gtagctggactagagaatggcattcaggaattcgggtccataaagacggtgcttacatct 632
Query: 421 ggttggctgcgggatgagaactcctttcaacagcccgacaaggtggtgccggcggcaagt 480
||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 633 ggttggctgcgggatgagaactctttccaacagcctgacaaggtggtgccggcggcaagc 692
Query: 481 ccaataaccaacgcgggcaagcaaatgggtgt 512
|| ||||||||||||||| || | ||||||||
Sbjct: 693 cccataaccaacgcgggcgagaagatgggtgt 724
>gb|CB672452.1|CB672452 OSJNEe06H22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06H22 3', mRNA sequence
Length = 890
Score = 317 bits (160), Expect = 3e-084
Identities = 425/512 (83%), Gaps = 1/512 (0%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct: 890 cgaggaacattagtagctgctttagcagaagctgcatttctcattg-attagaaagaaac 832
Query: 61 agcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaagg 120
|| || ||||| |||||||||||||||||||||||| | |||| ||||| || | ||
Sbjct: 831 agtgatgtggtcgagatggcaagttgtgctccactcttcataaatgacaacgatcgcggg 772
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattactgg 180
| | |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 771 tttagtccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactgg 712
Query: 181 atgctgcactttttcaaagattcaagcagcgccacacttcatccgtccactattcaacta 240
||||| ||||| ||||| || ||||| | || ||||||||||| | || ||||| |
Sbjct: 711 atgctacacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtg 652
Query: 241 ccgaactacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaac 300
| ||||| || ||| ||| | |||||||| |||||||| | || | | ||||| |||
Sbjct: 651 tcaaactatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaac 592
Query: 301 acttacatgaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatct 360
|||||| |||||||||||||||| |||||||| | ||||||||| | ||| |||||| ||
Sbjct: 591 acttacttgaaaataaaggttgtcaattttggtaacaaagctgtgaatcttaatatagct 532
Query: 361 gtaactgggttggaaactgatattcagacatttggatccataaagacggttctcacgtcg 420
||| |||| | || | || |||||| ||| || |||||||||||||| || || ||
Sbjct: 531 gtagctggactagagaatggcattcaggaattcgggtccataaagacggtgcttacatct 472
Query: 421 ggttggctgcgggatgagaactcctttcaacagcccgacaaggtggtgccggcggcaagt 480
||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 471 ggttggctgcgggatgagaactctttccaacagcctgacaaggtggtgccggcggcaagc 412
Query: 481 ccaataaccaacgcgggcaagcaaatgggtgt 512
|| ||||||||||||||| || | ||||||||
Sbjct: 411 cccataaccaacgcgggcgagaagatgggtgt 380
>gb|CB676813.1|CB676813 OSJNEe13E16.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13E16 3', mRNA sequence
Length = 706
Score = 242 bits (122), Expect = 2e-061
Identities = 320/386 (82%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 616 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 557
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 556 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 497
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 496 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 437
Query: 307 atgaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaact 366
|||||||||||||||| |||||||| | ||||||||| | ||| |||||| ||||| ||
Sbjct: 436 ttgaaaataaaggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagct 377
Query: 367 gggttggaaactgatattcagacatttggatccataaagacggttctcacgtcgggttgg 426
|| | || | || |||||| ||| || |||||||||||||| || || || ||||||
Sbjct: 376 ggactagagaatggcattcaggaattcgggtccataaagacggtgcttacatctggttgg 317
Query: 427 ctgcgggatgagaactcctttcaacagcccgacaaggtggtgccggcggcaagtccaata 486
||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||
Sbjct: 316 ctgcgggatgagaactctttccaacagcctgacaaggtggtgccggcggcaagccccata 257
Query: 487 accaacgcgggcaagcaaatgggtgt 512
|||||||||||| || | ||||||||
Sbjct: 256 accaacgcgggcgagaagatgggtgt 231
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 53 aaaggaacagcgacgtggttgagatggcaagttgtgctccactc 96
|||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct: 690 aaagaaacagtgatgtggtggagatggcaagttgtgctccactc 647
>gb|CA998416.1|CA998416 S345D_E12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 691
Score = 220 bits (111), Expect = 6e-055
Identities = 350/430 (81%)
Strand = Plus / Plus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 262 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 321
Query: 61 agcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaagg 120
|| || ||||| |||||||||||||||||||||||| | |||| ||||| || | ||
Sbjct: 322 agtgatgtggtcgagatggcaagttgtgctccactcttcataaatgacaacgatcgcggg 381
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattactgg 180
| | |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 382 tttagtccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactgg 441
Query: 181 atgctgcactttttcaaagattcaagcagcgccacacttcatccgtccactattcaacta 240
||||| ||||| ||||| || ||||| | || ||||||||||| | || ||||| |
Sbjct: 442 atgctacacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtg 501
Query: 241 ccgaactacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaac 300
| ||||| || ||| ||| | |||||||| |||||||| | || | | ||||| |||
Sbjct: 502 tcaaactatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaac 561
Query: 301 acttacatgaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatct 360
|||||| |||||||||||||||| ||||||| | ||||||||| | ||| |||||| ||
Sbjct: 562 acttacttgaaaataaaggttgtncattttggtaacaaagctgtgaatcttaatatagct 621
Query: 361 gtaactgggttggaaactgatattcagacatttggatccataaagacggttctcacgtcg 420
||| |||| | || | || |||||| ||| || |||||||||||||| || || ||
Sbjct: 622 gtagctggactagagaatggcattcaggaattcgggtccataaagacggtgcttacatct 681
Query: 421 ggttggctgc 430
||||||||||
Sbjct: 682 ggttggctgc 691
>gb|CB672451.1|CB672451 OSJNEe06H22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06H22 5', mRNA sequence
Length = 765
Score = 190 bits (96), Expect = 5e-046
Identities = 192/224 (85%)
Strand = Plus / Plus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 494 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 553
Query: 61 agcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaagg 120
|| || ||||| |||||||||||||||||||||||| | |||| ||||| || | ||
Sbjct: 554 agtgatgtggtcgagatggcaagttgtgctccactcttcataaatgacaacgatcgcggg 613
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattactgg 180
| | |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 614 tttagtccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactgg 673
Query: 181 atgctgcactttttcaaagattcaagcagcgccacacttcatcc 224
||||| ||||| ||||| || ||||| | || |||||||||||
Sbjct: 674 atgctacacttcttcaaggactcaagtggtgcaacacttcatcc 717
>gb|CB650175.1|CB650175 OSJNEb14H19.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14H19 5', mRNA sequence
Length = 881
Score = 184 bits (93), Expect = 3e-044
Identities = 171/197 (86%)
Strand = Plus / Plus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 568 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 627
Query: 61 agcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaagg 120
|| || ||||| |||||||||||||||||||||||| | |||| ||||| || | ||
Sbjct: 628 agtgatgtggtcgagatggcaagttgtgctccactcttcataaatgacaacgatcgcggg 687
Query: 121 tggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattactgg 180
| | |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 688 tttagtccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactgg 747
Query: 181 atgctgcactttttcaa 197
||||| ||||| |||||
Sbjct: 748 atgctacacttcttcaa 764
>gb|CB650176.1|CB650176 OSJNEb14H19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14H19 3', mRNA sequence
Length = 782
Score = 176 bits (89), Expect = 8e-042
Identities = 188/221 (85%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttggaagcaaagctgttagtctg 351
||||| ||||||||| |||||||||||||||| |||||||| | ||||||||| | |||
Sbjct: 709 gatggaaacacttacttgaaaataaaggttgtcaattttggtaacaaagctgtgaatctt 650
Query: 352 aatatatctgtaactgggttggaaactgatattcagacatttggatccataaagacggtt 411
|||||| ||||| |||| | || | || |||||| ||| || ||||||||||||||
Sbjct: 649 aatatagctgtagctggactagagaatggcattcaggaattcgggtccataaagacggtg 590
Query: 412 ctcacgtcgggttggctgcgggatgagaactcctttcaacagcccgacaaggtggtgccg 471
|| || || ||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 589 cttacatctggttggctgcgggatgagaactctttccaacagcctgacaaggtggtgccg 530
Query: 472 gcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
|||||||| || ||||||||||||||| || | ||||||||
Sbjct: 529 gcggcaagccccataaccaacgcgggcgagaagatgggtgt 489
>gb|CV723498.1|CV723498 root--03-M05.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-M05, mRNA sequence
Length = 488
Score = 159 bits (80), Expect = 2e-036
Identities = 173/204 (84%)
Strand = Plus / Plus
Query: 309 gaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgg 368
||||||||||||||| |||||||| | ||||||||| | ||| |||||| ||||| ||||
Sbjct: 32 gaaaataaaggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctgg 91
Query: 369 gttggaaactgatattcagacatttggatccataaagacggttctcacgtcgggttggct 428
| || | || |||||| ||| || |||||||||||||| || || || ||||||||
Sbjct: 92 actagagaatggcattcaggaattcgggtccataaagacggtgcttacatctggttggct 151
Query: 429 gcgggatgagaactcctttcaacagcccgacaaggtggtgccggcggcaagtccaataac 488
||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 152 gcgggatgagaactctttccaacagcctgacaaggtggtgccggcggcaagccccataac 211
Query: 489 caacgcgggcaagcaaatgggtgt 512
|||||||||| || | ||||||||
Sbjct: 212 caacgcgggcgagaagatgggtgt 235
>dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F23, full
insert sequence
Length = 2574
Score = 141 bits (71), Expect = 4e-031
Identities = 146/171 (85%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgtgctcca 93
||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct: 1686 gcatttctcgttggattagaaagaaacagcgacgtggtagagatggcaagctgtgcaccg 1745
Query: 94 ctccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaactcatgg 153
||| ||||||| |||||||| | || |||| ||||| || || || || |||||||||
Sbjct: 1746 ctctttgtaaatgacaatgatcgcagatggagtccagacgcaattgtgttcaactcatgg 1805
Query: 154 cagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 1806 cagaactatggatgcccaaactactggatgctacatttcttcaaagattca 1856
>ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1995
Score = 141 bits (71), Expect = 4e-031
Identities = 146/171 (85%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgtgctcca 93
||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct: 1447 gcatttctcgttggattagaaagaaacagcgacgtggtagagatggcaagctgtgcaccg 1506
Query: 94 ctccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaactcatgg 153
||| ||||||| |||||||| | || |||| ||||| || || || || |||||||||
Sbjct: 1507 ctctttgtaaatgacaatgatcgcagatggagtccagacgcaattgtgttcaactcatgg 1566
Query: 154 cagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 1567 cagaactatggatgcccaaactactggatgctacatttcttcaaagattca 1617
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0042L15, from chromosome 3, complete sequence
Length = 172475
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 74556 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 74497
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 74496 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 74437
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 74436 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 74377
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 74376 ttgaaaataaaggt 74363
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 74287 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 74228
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 74227 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 74168
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 74167 agaactctttccaacagcctgacaaggt 74140
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 75179 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 75120
Query: 61 ag 62
||
Sbjct: 75119 ag 75118
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 73800 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 73749
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 74830 gtggtcgagatggcaagttgtgctccactc 74801
>gb|AACV01006501.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006501, whole
genome shotgun sequence
Length = 22973
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1987 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 1928
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 1927 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 1868
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 1867 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 1808
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 1807 ttgaaaataaaggt 1794
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 1718 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 1659
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 1658 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 1599
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 1598 agaactctttccaacagcctgacaaggt 1571
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 2610 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 2551
Query: 61 ag 62
||
Sbjct: 2550 ag 2549
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 1231 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 1180
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 2261 gtggtcgagatggcaagttgtgctccactc 2232
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2866244 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 2866185
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 2866184 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 2866125
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 2866124 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 2866065
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 2866064 ttgaaaataaaggt 2866051
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 2865975 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 2865916
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 2865915 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 2865856
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 2865855 agaactctttccaacagcctgacaaggt 2865828
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 2866867 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 2866808
Query: 61 ag 62
||
Sbjct: 2866807 ag 2866806
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 2865488 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 2865437
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 2866518 gtggtcgagatggcaagttgtgctccactc 2866489
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11647211 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 11647152
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 11647151 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 11647092
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 11647091 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 11647032
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 11647031 ttgaaaataaaggt 11647018
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 11646942 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 11646883
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 11646882 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 11646823
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 11646822 agaactctttccaacagcctgacaaggt 11646795
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 11647834 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 11647775
Query: 61 ag 62
||
Sbjct: 11647774 ag 11647773
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 11646455 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 11646404
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 11647485 gtggtcgagatggcaagttgtgctccactc 11647456
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11839573 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 11839514
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 11839513 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 11839454
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 11839453 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 11839394
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 11839393 ttgaaaataaaggt 11839380
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 11839304 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 11839245
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 11839244 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 11839185
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 11839184 agaactctttccaacagcctgacaaggt 11839157
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 11840196 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 11840137
Query: 61 ag 62
||
Sbjct: 11840136 ag 11840135
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 11838817 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 11838766
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 11839847 gtggtcgagatggcaagttgtgctccactc 11839818
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11520747 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 11520688
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 11520687 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 11520628
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 11520627 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 11520568
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 11520567 ttgaaaataaaggt 11520554
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 11520478 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 11520419
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 11520418 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 11520359
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 11520358 agaactctttccaacagcctgacaaggt 11520331
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 11521370 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 11521311
Query: 61 ag 62
||
Sbjct: 11521310 ag 11521309
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 11519991 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 11519940
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 11521021 gtggtcgagatggcaagttgtgctccactc 11520992
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 107 bits (54), Expect = 6e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11523984 ccagatgccatagtcttcaactcatggcagcactatggatgtccaaactactggatgcta 11523925
Query: 187 cactttttcaaagattcaagcagcgccacacttcatccgtccactattcaactaccgaac 246
||||| ||||| || ||||| | || ||||||||||| | || ||||| | | |||
Sbjct: 11523924 cacttcttcaaggactcaagtggtgcaacacttcatcccttgacaattcaggtgtcaaac 11523865
Query: 247 tacgaccaactggtcacatctgctatcacttggaataacccacatgatgggaacacttac 306
|| || ||| ||| | |||||||| |||||||| | || | | ||||| |||||||||
Sbjct: 11523864 tatgatcaattggccgcatctgctctcacttggcagaattctaacgatggaaacacttac 11523805
Query: 307 atgaaaataaaggt 320
|||||||||||||
Sbjct: 11523804 ttgaaaataaaggt 11523791
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 11523715 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 11523656
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 11523655 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 11523596
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 11523595 agaactctttccaacagcctgacaaggt 11523568
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 11524607 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 11524548
Query: 61 ag 62
||
Sbjct: 11524547 ag 11524546
Score = 63.9 bits (32), Expect = 8e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgt 512
||||||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct: 11523228 aggtggtgccggcggcaagccccataaccaacgcgggcgagaagatgggtgt 11523177
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactc 96
||||| ||||||||||||||||||||||||
Sbjct: 11524258 gtggtcgagatggcaagttgtgctccactc 11524229
>dbj|AG212909.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF9037_0_501_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF9037, genomic survey sequence
Length = 319
Score = 87.7 bits (44), Expect = 6e-015
Identities = 122/148 (82%)
Strand = Plus / Plus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
||||||| |||||||| | ||||||||| | ||| |||||| ||||| |||| | || |
Sbjct: 131 aggttgtcaattttggtaacaaagctgtgaatcttaatatagctgtagctggactagaga 190
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
|| |||||| ||| || |||||||||||||| || || || ||||||||||||||||
Sbjct: 191 atggcattcaggaattcgggtccataaagacggtgcttacatctggttggctgcgggatg 250
Query: 437 agaactcctttcaacagcccgacaaggt 464
||||||| || |||||||| ||||||||
Sbjct: 251 agaactctttccaacagcctgacaaggt 278
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 292 gatgggaacacttacatgaaaataaaggt 320
||||| ||||||||| |||||||||||||
Sbjct: 27 gatggaaacacttacttgaaaataaaggt 55
>dbj|AG208412.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3020_0_702_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3020, genomic survey sequence
Length = 560
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 156 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 97
Query: 61 ag 62
||
Sbjct: 96 ag 95
>dbj|AG022717.1| Oryza sativa (japonica cultivar-group) DNA, clone:NC2552_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NC2552, genomic survey sequence
Length = 471
Score = 83.8 bits (42), Expect = 9e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 187 cgaggaacattagtagctgctctagcagaagctgcatttctcattggattagaaagaaac 246
Query: 61 ag 62
||
Sbjct: 247 ag 248
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1200_C08
Length = 106214
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 81843 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 81902
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 81649 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 81702
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 81368 gcatttctcgttggattagaaagaaacag 81396
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1150_E04
Length = 130973
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 69004 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 69063
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 68810 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 68863
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 68529 gcatttctcgttggattagaaagaaacag 68557
>gb|AACV01017045.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017045, whole
genome shotgun sequence
Length = 18063
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 3067 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 3008
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 3261 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 3208
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 3542 gcatttctcgttggattagaaagaaacag 3514
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 16746891 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 16746950
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 16746697 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 16746750
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 16746416 gcatttctcgttggattagaaagaaacag 16746444
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 14732311 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 14732370
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 14732117 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 14732170
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 14731836 gcatttctcgttggattagaaagaaacag 14731864
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 28131750 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 28131809
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 28131556 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 28131609
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 28131275 gcatttctcgttggattagaaagaaacag 28131303
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 71.9 bits (36), Expect = 3e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 145 aactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattca 204
|||||||||||| |||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 29133886 aactcatggcagaactatggatgcccaaactactggatgctacatttcttcaaagattca 29133945
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct: 29133692 cagcgacgtggtagagatggcaagctgtgcaccgctctttgtaaatgacaatga 29133745
Score = 42.1 bits (21), Expect = 0.29
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 gcatttctcattggattagaaaggaacag 62
||||||||| ||||||||||||| |||||
Sbjct: 29133411 gcatttctcgttggattagaaagaaacag 29133439
>gb|CB643141.1|CB643141 OSJNEb03K21.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03K21 3', mRNA sequence
Length = 766
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 659 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 600
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 599 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 549
>gb|CB649773.1|CB649773 OSJNEb13O11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13O11 3', mRNA sequence
Length = 815
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 658 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 599
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 598 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 548
>gb|CB651549.1|CB651549 OSJNEb16I21.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16I21 3', mRNA sequence
Length = 821
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 659 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 600
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 599 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 549
>gb|CB669652.1|CB669652 OSJNEe02E22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02E22 3', mRNA sequence
Length = 819
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 798 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 739
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 738 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 688
>gb|CB669722.1|CB669722 OSJNEe02G23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02G23 5', mRNA sequence
Length = 798
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 798 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 739
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 738 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 688
>gb|CB678078.1|CB678078 OSJNEe15K07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe15K07 3', mRNA sequence
Length = 691
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 674 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 615
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 614 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 564
>dbj|AK061612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B06, full
insert sequence
Length = 926
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 108 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 167
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 168 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 218
>dbj|AK065240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I08, full
insert sequence
Length = 2285
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| |||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 1622 agatggcaagttatgcaccactcttcgtgaacaacaatgatcaaacgtggaacccagacg 1681
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || |||||| ||| | |||||||||||
Sbjct: 1682 ccattgtatttaactcctggcaacaatatggaactcctagttactggatgc 1732
>gb|AQ575769.1|AQ575769 nbxb0087L14f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0087L14f, DNA sequence
Length = 609
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||||| |||| | ||||| ||||||||| | || |||||| |||| | ||||
Sbjct: 443 aggtggaacccagctgctgtcgtcttcaactcatggaaacagtatggaagtcctagttac 384
Query: 178 tggatgc 184
|||||||
Sbjct: 383 tggatgc 377
>gb|D46199.1|D46199 RICS10723A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 340
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 173 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 232
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 233 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 283
>gb|CB641393.1|CB641393 OSJNEb01A03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01A03 3', mRNA sequence
Length = 818
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 672 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 613
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 612 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 562
>gb|CB661902.1|CB661902 OSJNEd05F11.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05F11 3', mRNA sequence
Length = 810
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 659 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 600
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 599 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 549
>gb|CB664093.1|CB664093 OSJNEd09J24.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09J24 3', mRNA sequence
Length = 861
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 704 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 645
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 644 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 594
>gb|CB668680.1|CB668680 OSJNEd16K11.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16K11 5', mRNA sequence
Length = 752
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 256 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 315
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 316 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 366
>gb|CB668681.1|CB668681 OSJNEd16K11.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16K11 3', mRNA sequence
Length = 772
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 664 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 605
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 604 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 554
>gb|CB670940.1|CB670940 OSJNEe04E10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04E10 3', mRNA sequence
Length = 787
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 659 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 600
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 599 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 549
>gb|CB674069.1|CB674069 OSJNEe08P02.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08P02 3', mRNA sequence
Length = 797
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 669 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 610
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 609 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 559
>gb|CB682403.1|CB682403 OSJNEf09L04.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf09L04 5', mRNA sequence
Length = 752
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 459 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 518
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 519 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 569
>dbj|AK072576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M13, full
insert sequence
Length = 2272
Score = 54.0 bits (27), Expect = 8e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| ||| ||||| | || ||| ||||||| |||| |||||||||||| |
Sbjct: 1616 agatggcaagttatgcaccactgttcgtgaacaacaatgatcaaacgtggaacccagacg 1675
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
| || || |||||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 1676 ccattgtatttaactcctggcaacaatacggaactcctagttactggatgc 1726
>gb|AACV01009093.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009093, whole
genome shotgun sequence
Length = 33275
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||||| |||| | ||||| ||||||||| | || |||||| |||| | ||||
Sbjct: 8900 aggtggaacccagctgctgtcgtcttcaactcatggaaacagtatggaagtcctagttac 8841
Query: 178 tggatgc 184
|||||||
Sbjct: 8840 tggatgc 8834
>ref|NT_079855.2| Oryza sativa (japonica cultivar-group)
Length = 2354488
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||||| |||| | ||||| ||||||||| | || |||||| |||| | ||||
Sbjct: 2228588 aggtggaacccagctgctgtcgtcttcaactcatggaaacagtatggaagtcctagttac 2228529
Query: 178 tggatgc 184
|||||||
Sbjct: 2228528 tggatgc 2228522
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||||| |||| | ||||| ||||||||| | || |||||| |||| | ||||
Sbjct: 1885086 aggtggaacccagctgctgtcgtcttcaactcatggaaacagtatggaagtcctagttac 1885027
Query: 178 tggatgc 184
|||||||
Sbjct: 1885026 tggatgc 1885020
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 54.0 bits (27), Expect = 8e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||||| |||| | ||||| ||||||||| | || |||||| |||| | ||||
Sbjct: 9232448 aggtggaacccagctgctgtcgtcttcaactcatggaaacagtatggaagtcctagttac 9232389
Query: 178 tggatgc 184
|||||||
Sbjct: 9232388 tggatgc 9232382
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 701,170
Number of Sequences: 438736
Number of extensions: 701170
Number of successful extensions: 11477
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10942
Number of HSP's gapped (non-prelim): 532
length of query: 526
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 505
effective length of database: 2,791,206,460
effective search space: 1409559262300
effective search space used: 1409559262300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)