BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA... 617 e-174
dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA... 617 e-174
ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA 617 e-174
tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group)... 603 e-170
gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) c... 603 e-170
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 603 e-170
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 603 e-170
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 603 e-170
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 603 e-170
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 603 e-170
dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA... 569 e-160
dbj|AK058615.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 68 6e-009
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 68 6e-009
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 68 6e-009
ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA 68 6e-009
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 68 6e-009
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|AQ916163.1|AQ916163 nbeb0061B14r CUGI Rice BAC Library (... 60 2e-006
gb|C26272.1|C26272 C26272 Rice callus cDNA Oryza sativa (ja... 60 2e-006
dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 ... 60 2e-006
gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01... 58 6e-006
tpg|BK000089.1| TPA: Oryza sativa (japonica cultivar-group)... 58 6e-006
gb|AACV01022174.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|NM_197900.1| Oryza sativa (japonica cultivar-group) put... 58 6e-006
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 58 6e-006
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|D40691.1|D40691 RICS2805A Rice shoot Oryza sativa (japon... 56 2e-005
gb|D41261.1|D41261 RICS3630A Rice shoot Oryza sativa (japon... 56 2e-005
gb|AF030052.1|AF030052 Oryza sativa subsp. japonica RSW1-li... 56 2e-005
dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chro... 56 2e-005
gb|AC132494.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AK067850.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP005824.4| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AC135426.2| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AACV01011005.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-005
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 56 2e-005
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AQ913892.1|AQ913892 nbeb0045L07r CUGI Rice BAC Library (... 52 4e-004
gb|D46824.1|D46824 RICS11739A Rice green shoot Oryza sativa... 52 4e-004
gb|CB641167.1|CB641167 OSJNEa18C01.f OSJNEa Oryza sativa (j... 52 4e-004
gb|CB641197.1|CB641197 OSJNEa18D17.f OSJNEa Oryza sativa (j... 52 4e-004
dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AACV01015403.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AQ049866.1|AQ049866 nbxb0002cG08f CUGI Rice BAC Library ... 48 0.006
gb|CB637086.1|CB637086 OSJNEa03E07.f OSJNEa Oryza sativa (j... 48 0.006
gb|CB639904.1|CB639904 OSJNEa12H04.f OSJNEa Oryza sativa (j... 48 0.006
gb|CB640086.1|CB640086 OSJNEa13D08.f OSJNEa Oryza sativa (j... 48 0.006
gb|CB676377.1|CB676377 OSJNEe12J14.f OSJNEe Oryza sativa (j... 48 0.006
gb|CB677472.1|CB677472 OSJNEe14G24.f OSJNEe Oryza sativa (j... 48 0.006
gb|CF307212.1|CF307212 HDA1--06-B04.g1 OsHDAC1-overexpressi... 48 0.006
dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK120236.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AP004298.4| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
>dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085F12, full
insert sequence
Length = 3968
Score = 617 bits (311), Expect = e-174
Identities = 530/603 (87%)
Strand = Plus / Plus
Query: 5 agcccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatgg 64
||||||||||||||||| |||||||| || ||||| || |||||||| |||||| |||||
Sbjct: 1263 agcccatacaggcttcttattcttattcgtatggctgttcttggtctattccttgcatgg 1322
Query: 65 agaattaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaa 124
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 1323 agaattaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaa 1382
Query: 125 ctctggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgg 184
||||||||||| | || ||||| | || |||||||||||| |||||||||| |||||
Sbjct: 1383 ctctggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccga 1442
Query: 185 gccactgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctact 244
|| ||||||||||| ||||||||||| |||||||||||||| || || || || ||||
Sbjct: 1443 gcaactgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaac 1502
Query: 245 ggacggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaa 304
||| | || || | || ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 1503 ggaagatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaa 1562
Query: 305 cctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggag 364
|| ||| ||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 1563 cccccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgag 1622
Query: 365 aagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggct 424
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1623 aagctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggct 1682
Query: 425 gaagctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcct 484
||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 1683 gaagccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcct 1742
Query: 485 cgcaatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccag 544
||||| || || |||||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 1743 cgcaacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttct 1802
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1803 gattttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatc 1862
Query: 605 aat 607
|||
Sbjct: 1863 aat 1865
>dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B04, full
insert sequence
Length = 4089
Score = 617 bits (311), Expect = e-174
Identities = 530/603 (87%)
Strand = Plus / Plus
Query: 5 agcccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatgg 64
||||||||||||||||| |||||||| || ||||| || |||||||| |||||| |||||
Sbjct: 1152 agcccatacaggcttcttattcttattcgtatggctgttcttggtctattccttgcatgg 1211
Query: 65 agaattaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaa 124
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 1212 agaattaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaa 1271
Query: 125 ctctggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgg 184
||||||||||| | || ||||| | || |||||||||||| |||||||||| |||||
Sbjct: 1272 ctctggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccga 1331
Query: 185 gccactgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctact 244
|| ||||||||||| ||||||||||| |||||||||||||| || || || || ||||
Sbjct: 1332 gcaactgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaac 1391
Query: 245 ggacggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaa 304
||| | || || | || ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 1392 ggaagatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaa 1451
Query: 305 cctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggag 364
|| ||| ||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 1452 cccccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgag 1511
Query: 365 aagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggct 424
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1512 aagctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggct 1571
Query: 425 gaagctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcct 484
||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 1572 gaagccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcct 1631
Query: 485 cgcaatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccag 544
||||| || || |||||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 1632 cgcaacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttct 1691
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1692 gattttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatc 1751
Query: 605 aat 607
|||
Sbjct: 1752 aat 1754
>ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 3968
Score = 617 bits (311), Expect = e-174
Identities = 530/603 (87%)
Strand = Plus / Plus
Query: 5 agcccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatgg 64
||||||||||||||||| |||||||| || ||||| || |||||||| |||||| |||||
Sbjct: 1263 agcccatacaggcttcttattcttattcgtatggctgttcttggtctattccttgcatgg 1322
Query: 65 agaattaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaa 124
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 1323 agaattaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaa 1382
Query: 125 ctctggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgg 184
||||||||||| | || ||||| | || |||||||||||| |||||||||| |||||
Sbjct: 1383 ctctggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccga 1442
Query: 185 gccactgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctact 244
|| ||||||||||| ||||||||||| |||||||||||||| || || || || ||||
Sbjct: 1443 gcaactgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaac 1502
Query: 245 ggacggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaa 304
||| | || || | || ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 1503 ggaagatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaa 1562
Query: 305 cctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggag 364
|| ||| ||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 1563 cccccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgag 1622
Query: 365 aagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggct 424
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1623 aagctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggct 1682
Query: 425 gaagctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcct 484
||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 1683 gaagccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcct 1742
Query: 485 cgcaatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccag 544
||||| || || |||||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 1743 cgcaacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttct 1802
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1803 gattttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatc 1862
Query: 605 aat 607
|||
Sbjct: 1863 aat 1865
>tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group) cellulose synthase-like
D2 gene, complete cds
Length = 5000
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Plus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 1676 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 1735
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 1736 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 1795
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 1796 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 1855
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 1856 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 1915
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 1916 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 1975
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 1976 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 2035
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 2036 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 2095
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 2096 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 2155
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 2156 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 2215
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2216 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 2275
>gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012879, whole
genome shotgun sequence
Length = 80883
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Plus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 49469 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 49528
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 49529 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 49588
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 49589 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 49648
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 49649 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 49708
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 49709 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 49768
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 49769 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 49828
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 49829 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 49888
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 49889 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 49948
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 49949 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 50008
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 50009 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 50068
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Minus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 68820 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 68761
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 68760 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 68701
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 68700 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 68641
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 68640 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 68581
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 68580 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 68521
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 68520 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 68461
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 68460 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 68401
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 68400 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 68341
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 68340 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 68281
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 68280 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 68221
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Minus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 625969 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 625910
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 625909 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 625850
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 625849 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 625790
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 625789 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 625730
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 625729 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 625670
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 625669 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 625610
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 625609 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 625550
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 625549 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 625490
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 625489 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 625430
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 625429 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 625370
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Minus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 555591 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 555532
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 555531 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 555472
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 555471 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 555412
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 555411 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 555352
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 555351 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 555292
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 555291 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 555232
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 555231 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 555172
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 555171 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 555112
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 555111 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 555052
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 555051 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 554992
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Minus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 555591 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 555532
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 555531 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 555472
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 555471 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 555412
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 555411 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 555352
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 555351 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 555292
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 555291 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 555232
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 555231 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 555172
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 555171 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 555112
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 555111 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 555052
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 555051 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 554992
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 603 bits (304), Expect = e-170
Identities = 526/600 (87%)
Strand = Plus / Minus
Query: 8 ccatacaggcttctcattcttatccgcatggccgtccttggtctgttccttacatggaga 67
|||| ||||||||| |||||||| || ||||| || |||||||| |||||| ||||||||
Sbjct: 662392 ccatgcaggcttcttattcttattcgtatggctgttcttggtctattccttgcatggaga 662333
Query: 68 attaagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactc 127
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 662332 attaagcacaagaatgaggatgcaatgtggctatggggcatgtctgttgtttgcgaactc 662273
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggcc 187
|||||||| | || ||||| | || |||||||||||| |||||||||| ||||| ||
Sbjct: 662272 tggtttggcctctcttggctcttggatcagctgccaaagttgtgccctgttaaccgagca 662213
Query: 188 actgaccttgccgtcctgaaagacaagtttgagaccccaacaccgtccaaccctactgga 247
||||||||||| ||||||||||| |||||||||||||| || || || || |||| |||
Sbjct: 662212 actgaccttgctgtcctgaaagataagtttgagaccccgacgccatcaaatcctaacgga 662153
Query: 248 cggtcggatttaccagggcttgatatatttgtatctactgctgatccggagaaagaacct 307
| || || | || ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 662152 agatctgacctgccggggctcgatatatttgtgtctactgctgatccagaaaaagaaccc 662093
Query: 308 ccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaag 367
||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 662092 ccattggtcacagcaaatactattctgtccatccttgctgctgattatcctgttgagaag 662033
Query: 368 ctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctgaa 427
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 662032 ctttcttgctatgtttctgatgatggaggcgctctcctgacatttgaagcaatggctgaa 661973
Query: 428 gctgctagctttgctaatatgtgggttcctttctgtcgcaagcacaacattgagcctcgc 487
|| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 661972 gccgctagctttgcaaacatgtgggttcctttctgtcgcaaacatgacattgagcctcgc 661913
Query: 488 aatcctgacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggat 547
|| || || |||||||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 661912 aacccagagagctactttaatctgaagagggacccatacaagaacaaggtccgttctgat 661853
Query: 548 tttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatcaat 607
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 661852 tttgtcaaggacagaagaagggtgaagagggagtacgacgagttcaaggtcaggatcaat 661793
>dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103F21, full
insert sequence
Length = 2757
Score = 569 bits (287), Expect = e-160
Identities = 488/555 (87%)
Strand = Plus / Plus
Query: 53 ttccttacatggagaattaagcacaagaatgaggatgccatttggctctggggcatgtct 112
|||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 6 ttccttgcatggagaattaagcacaagaatgaggatgcaatgtggctatggggcatgtct 65
Query: 113 gttgtctgcgaactctggtttggtttttcatggctgctcgaccagctgccaaagctgtgc 172
||||| ||||||||||||||||| | || ||||| | || |||||||||||| |||||
Sbjct: 66 gttgtttgcgaactctggtttggcctctcttggctcttggatcagctgccaaagttgtgc 125
Query: 173 cctgtgaaccgggccactgaccttgccgtcctgaaagacaagtttgagaccccaacaccg 232
||||| ||||| || ||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct: 126 cctgttaaccgagcaactgaccttgctgtcctgaaagataagtttgagaccccgacgcca 185
Query: 233 tccaaccctactggacggtcggatttaccagggcttgatatatttgtatctactgctgat 292
|| || |||| ||| | || || | || ||||| ||||||||||| ||||||||||||
Sbjct: 186 tcaaatcctaacggaagatctgacctgccggggctcgatatatttgtgtctactgctgat 245
Query: 293 ccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgac 352
|| || |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 246 ccagaaaaagaacccccattggtcacagcaaatactattctgtccatccttgctgctgat 305
Query: 353 taccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgactttt 412
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 306 tatcctgttgagaagctttcttgctatgtttctgatgatggaggcgctctcctgacattt 365
Query: 413 gaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaagcac 472
||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 366 gaagcaatggctgaagccgctagctttgcaaacatgtgggttcctttctgtcgcaaacat 425
Query: 473 aacattgagcctcgcaatcctgacagctacttcaatcttaagaaggacccatacaagaac 532
|||||||||||||||| || || |||||||| ||||| |||| ||||||||||||||||
Sbjct: 426 gacattgagcctcgcaacccagagagctactttaatctgaagagggacccatacaagaac 485
Query: 533 aaggttcgccaggattttgtcaaggacaggaggagggtcaagagggagtatgacgagttc 592
||||| || ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 486 aaggtccgttctgattttgtcaaggacagaagaagggtgaagagggagtacgacgagttc 545
Query: 593 aaggtcaggatcaat 607
|||||||||||||||
Sbjct: 546 aaggtcaggatcaat 560
>dbj|AK058615.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B02, full
insert sequence
Length = 856
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 265 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 324
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 325 tgttgataaggtatcttgctatgtgtctgatgatggag 362
>dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full
insert sequence
Length = 4282
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 1348 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 1407
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 1408 tgttgataaggtatcttgctatgtgtctgatgatggag 1445
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 18154 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 18213
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 18214 tgttgataaggtatcttgctatgtgtctgatgatggag 18251
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence,
complete sequence
Length = 41693
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 9184 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 9125
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 9124 tgttgataaggtatcttgctatgtgtctgatgatggag 9087
>gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008134, whole
genome shotgun sequence
Length = 22039
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 14717 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 14776
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 14777 tgttgataaggtatcttgctatgtgtctgatgatggag 14814
>ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3607
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 1459 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 1518
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 1519 tgttgataaggtatcttgctatgtgtctgatgatggag 1556
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 136402 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 136343
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 136342 tgttgataaggtatcttgctatgtgtctgatgatggag 136305
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 7197231 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 7197172
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 7197171 tgttgataaggtatcttgctatgtgtctgatgatggag 7197134
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 8596597 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 8596656
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 8596657 cttgctatgtttctgatgatgg 8596678
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 34463394 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 34463335
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 34463334 tgttgataaggtatcttgctatgtgtctgatgatggag 34463297
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 35862760 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 35862819
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 35862820 cttgctatgtttctgatgatgg 35862841
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 33570467 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 33570408
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 33570407 tgttgataaggtatcttgctatgtgtctgatgatggag 33570370
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 34966049 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 34966108
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 34966109 cttgctatgtttctgatgatgg 34966130
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 67.9 bits (34), Expect = 6e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| || ||||| || || ||| | || ||||||||||||| || |||||
Sbjct: 33479957 gaaagaacctcctcttgtcactgccaatactgtgctctccatccttgctgtggattaccc 33479898
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggag 395
||| || ||| | ||||||||||| |||||||||||||
Sbjct: 33479897 tgttgataaggtatcttgctatgtgtctgatgatggag 33479860
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 34875977 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 34876036
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 34876037 cttgctatgtttctgatgatgg 34876058
>gb|AQ916163.1|AQ916163 nbeb0061B14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0061B14r, DNA sequence
Length = 524
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 430 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 371
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 370 cttgctatgtttctgatgatgg 349
>gb|C26272.1|C26272 C26272 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12013_1A, mRNA sequence
Length = 432
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 251 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 310
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 311 cttgctatgtttctgatgatgg 332
>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full
insert sequence
Length = 4029
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 1285 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 1344
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 1345 cttgctatgtttctgatgatgg 1366
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaatg 608
|||||||| ||||| || ||||||||||| |||||||
Sbjct: 1545 aagagggaatatgaggaattcaaggtcagaatcaatg 1581
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
sequence
Length = 171376
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 139503 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 139444
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 139443 cttgctatgtttctgatgatgg 139422
>gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008229, whole
genome shotgun sequence
Length = 36790
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 5473 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 5532
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 5533 cttgctatgtttctgatgatgg 5554
>ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3905
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 1115 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 1174
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 1175 cttgctatgtttctgatgatgg 1196
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaatg 608
|||||||| ||||| || ||||||||||| |||||||
Sbjct: 1375 aagagggaatatgaggaattcaaggtcagaatcaatg 1411
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 312 tggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagcttt 371
||||||||||||| ||| ||||||| |||||||| | || || || || || ||| | |
Sbjct: 177680 tggtcacagcaaatactgttctgtctatccttgcggtagattatccggtcgacaaggtct 177739
Query: 372 cttgctatgtttctgatgatgg 393
||||||||||||||||||||||
Sbjct: 177740 cttgctatgtttctgatgatgg 177761
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
sequence
Length = 64582
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 59070 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 59129
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 59130 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 59174
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 58647 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 58706
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 58707 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 58766
Query: 191 gacct 195
|||||
Sbjct: 58767 gacct 58771
>tpg|BK000089.1| TPA: Oryza sativa (japonica cultivar-group) cellulose synthase-like
D1 gene, complete cds
Length = 4188
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 1548 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 1607
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 1608 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 1652
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 1125 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 1184
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 1185 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 1244
Query: 191 gacct 195
|||||
Sbjct: 1245 gacct 1249
>gb|AACV01022174.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022174, whole
genome shotgun sequence
Length = 50890
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 41784 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 41843
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 41844 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 41888
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 41361 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 41420
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 41421 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 41480
Query: 191 gacct 195
|||||
Sbjct: 41481 gacct 41485
>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase
(OSJNBa0035H01.10), mRNA
Length = 3384
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 1279 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 1338
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 1339 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 1383
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 856 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 915
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 916 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 975
Query: 191 gacct 195
|||||
Sbjct: 976 gacct 980
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 4466746 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 4466805
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 4466806 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 4466850
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 4466323 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 4466382
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 4466383 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 4466442
Query: 191 gacct 195
|||||
Sbjct: 4466443 gacct 4466447
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 10477940 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 10477999
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 10478000 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 10478044
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 10477517 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 10477576
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 10477577 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 10477636
Query: 191 gacct 195
|||||
Sbjct: 10477637 gacct 10477641
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 21343734 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 21343793
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 21343794 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 21343838
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 21343311 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 21343370
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 21343371 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 21343430
Query: 191 gacct 195
|||||
Sbjct: 21343431 gacct 21343435
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 22543352 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 22543411
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 22543412 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 22543456
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 22542929 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 22542988
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 22542989 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 22543048
Query: 191 gacct 195
|||||
Sbjct: 22543049 gacct 22543053
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 58.0 bits (29), Expect = 6e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 494 gacagctacttcaatcttaagaaggacccatacaagaacaaggttcgccaggattttgtc 553
|||||||||||||| || |||| |||||| | |||||||||||| || || |||
Sbjct: 22555820 gacagctacttcaacctcaagagggacccgttcaagaacaaggtgaagggcgacttcgtc 22555879
Query: 554 aaggacaggaggagggtcaagagggagtatgacgagttcaaggtc 598
||||||||| || |||| ||| ||||||| |||||||||||||||
Sbjct: 22555880 aaggacaggcggcgggtgaagcgggagtacgacgagttcaaggtc 22555924
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 71 aagcacaagaatgaggatgccatttggctctggggcatgtctgttgtctgcgaactctgg 130
|||||| |||| ||||| ||||| ||||| ||||| ||||| | || ||||| || |||
Sbjct: 22555397 aagcaccagaacgaggacgccatctggctgtgggggatgtccatcgtgtgcgagctgtgg 22555456
Query: 131 tttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaaccgggccact 190
|| | || || ||| |||| ||||||||||| ||||||||||| | ||||| |||||
Sbjct: 22555457 ttcgccttgtcgtgggtgctggaccagctgcccaagctgtgccccatcaaccgcgccacc 22555516
Query: 191 gacct 195
|||||
Sbjct: 22555517 gacct 22555521
>gb|D40691.1|D40691 RICS2805A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 335
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 69 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 128
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 129 gacaaagtgtcatgctatgtttctgacgatgg 160
>gb|D41261.1|D41261 RICS3630A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 461
Score = 56.0 bits (28), Expect = 2e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 314 gtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttct 373
|||||||||||||| | || ||||||||| ||| || ||||| || || ||| ||||
Sbjct: 340 gtcacagcaaacaccgtcctttccatcctttctgtggattacccagttgaaaaggtttcc 399
Query: 374 tgctatgtttctgatgatgg 393
||||||||||||||||||||
Sbjct: 400 tgctatgtttctgatgatgg 419
>gb|AF030052.1|AF030052 Oryza sativa subsp. japonica RSW1-like cellulose synthase catalytic
subunit mRNA, partial cds
Length = 1838
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1176 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1235
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1236 gacaaagtgtcatgctatgtttctgacgatgg 1267
>dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1134_A07,
*** SEQUENCING IN PROGRESS ***
Length = 146543
Score = 56.0 bits (28), Expect = 2e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 314 gtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttct 373
|||||||||||||| | || ||||||||| ||| || ||||| || || ||| ||||
Sbjct: 79627 gtcacagcaaacaccgtcctttccatcctttctgtggattacccagttgaaaaggtttcc 79686
Query: 374 tgctatgtttctgatgatgg 393
||||||||||||||||||||
Sbjct: 79687 tgctatgtttctgatgatgg 79706
>gb|AC132494.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0681F01, ***
SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 50149
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 13857 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 13798
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 13797 gacaaagtgtcatgctatgtttctgacgatgg 13766
>dbj|AK067850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123A09, full
insert sequence
Length = 1444
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1276 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1335
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1336 gacaaagtgtcatgctatgtttctgacgatgg 1367
>dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013125H24, full
insert sequence
Length = 3802
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1273 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1332
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1333 gacaaagtgtcatgctatgtttctgacgatgg 1364
>dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B06, full
insert sequence
Length = 3764
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1273 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1332
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1333 gacaaagtgtcatgctatgtttctgacgatgg 1364
>dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P03, full
insert sequence
Length = 3732
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1273 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1332
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1333 gacaaagtgtcatgctatgtttctgacgatgg 1364
>dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125F05, full
insert sequence
Length = 3801
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1273 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1332
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1333 gacaaagtgtcatgctatgtttctgacgatgg 1364
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full
insert sequence
Length = 3746
Score = 56.0 bits (28), Expect = 2e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 314 gtcacagcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttct 373
|||||||||||||| | || ||||||||| ||| || ||||| || || ||| ||||
Sbjct: 1185 gtcacagcaaacaccgtcctttccatcctttctgtggattacccagttgaaaaggtttcc 1244
Query: 374 tgctatgtttctgatgatgg 393
||||||||||||||||||||
Sbjct: 1245 tgctatgtttctgatgatgg 1264
>dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085K01, full
insert sequence
Length = 3768
Score = 56.0 bits (28), Expect = 2e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||| ||| |||||||||||||| || ||||||| || |||| || ||||||||
Sbjct: 1273 gaacctcctctgatcacagcaaacactgttttgtccattctggctgtggattaccctgtt 1332
Query: 362 gagaagctttcttgctatgtttctgatgatgg 393
|| || | || |||||||||||||| |||||
Sbjct: 1333 gacaaagtgtcatgctatgtttctgacgatgg 1364
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 854,988
Number of Sequences: 438736
Number of extensions: 854988
Number of successful extensions: 3977
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3635
Number of HSP's gapped (non-prelim): 292
length of query: 644
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 623
effective length of database: 2,791,206,460
effective search space: 1738921624580
effective search space used: 1738921624580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)