BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.3
(732 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) c... 182 2e-043
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 182 2e-043
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 182 2e-043
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 182 2e-043
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
gb|AU091748.1|AU091748 AU091748 Rice callus Oryza sativa (j... 168 3e-039
ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Oz... 168 3e-039
gb|AC125783.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
ref|NT_107135.1| Oryza sativa (japonica cultivar-group) 42 0.41
gb|AACV01023720.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|CH401266.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
>gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000520, whole
genome shotgun sequence
Length = 15554
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 7723 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 7664
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 7663 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 7604
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 7603 aatgttgacatggttatcttccccaactatgtgagt 7568
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 7351589 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 7351530
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 7351529 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 7351470
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 7351469 aatgttgacatggttatcttccccaactatgtgagt 7351434
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 7351429 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 7351370
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 7351369 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 7351310
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 7351309 aatgttgacatggttatcttccccaactatgtgagt 7351274
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 14835 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 14776
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 14775 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 14716
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 14715 aatgttgacatggttatcttccccaactatgtgagt 14680
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 7430766 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 7430707
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 7430706 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 7430647
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 7430646 aatgttgacatggttatcttccccaactatgtgagt 7430611
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 7430766 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 7430707
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 7430706 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 7430647
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 7430646 aatgttgacatggttatcttccccaactatgtgagt 7430611
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 182 bits (92), Expect = 2e-043
Identities = 140/156 (89%)
Strand = Plus / Minus
Query: 377 gtttgattgtcacaggatgctagaatggattggatcattcacctcgatactgatgagttg 436
|||||||| || |||||||| | ||||| ||||||||||| || ||||| |||||| |
Sbjct: 7353807 gtttgattatcgtaggatgctggcatggactggatcattcatcttgataccgatgagcta 7353748
Query: 437 attcatccagctggtgcccgagagtactccctgaggcgattgcttttagatgttcctgac 496
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 7353747 attcatccagctggtgcccgggagtactctctgaggcgattgcttttagatgttcctgat 7353688
Query: 497 aacgttgacatggttatcttccccaattatgtgagt 532
|| ||||||||||||||||||||||| |||||||||
Sbjct: 7353687 aatgttgacatggttatcttccccaactatgtgagt 7353652
>gb|AU091748.1|AU091748 AU091748 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11808, mRNA sequence
Length = 639
Score = 168 bits (85), Expect = 3e-039
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450
||||||| | ||||| ||||||||||| || ||||| |||||| | ||||||||||||||
Sbjct: 419 ggatgctggcatggactggatcattcatcttgataccgatgagctaattcatccagctgg 478
Query: 451 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggt 510
|||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 479 tgcccgggagtactctctgaggcgattgcttttagatgttcctgataatgttgacatggt 538
Query: 511 tatcttccccaattatg 527
|||||||||||| ||||
Sbjct: 539 tatcttccccaactatg 555
>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA
Length = 1671
Score = 168 bits (85), Expect = 3e-039
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 391 ggatgctagaatggattggatcattcacctcgatactgatgagttgattcatccagctgg 450
||||||| | ||||| ||||||||||| || ||||| |||||| | ||||||||||||||
Sbjct: 729 ggatgctggcatggactggatcattcatcttgataccgatgagctaattcatccagctgg 788
Query: 451 tgcccgagagtactccctgaggcgattgcttttagatgttcctgacaacgttgacatggt 510
|||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 789 tgcccgggagtactctctgaggcgattgcttttagatgttcctgataatgttgacatggt 848
Query: 511 tatcttccccaattatg 527
|||||||||||| ||||
Sbjct: 849 tatcttccccaactatg 865
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBb0039K08, complete sequence
Length = 122163
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 58575 ctcttcatattatttaatttt 58595
>ref|NT_107135.1| Oryza sativa (japonica cultivar-group)
Length = 983661
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 621514 ctcttcatattatttaatttt 621534
>gb|AACV01023720.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023720, whole
genome shotgun sequence
Length = 29603
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 9984 ctcttcatattatttaatttt 10004
>gb|CH401266.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000103
genomic scaffold, whole genome shotgun sequence
Length = 1217508
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 489757 ctcttcatattatttaatttt 489777
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 21420622 ctcttcatattatttaatttt 21420642
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 25746232 ctcttcatattatttaatttt 25746252
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 ctcttcatattatttaatttt 68
|||||||||||||||||||||
Sbjct: 26064902 ctcttcatattatttaatttt 26064922
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,065,459
Number of Sequences: 438736
Number of extensions: 1065459
Number of successful extensions: 7466
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7318
Number of HSP's gapped (non-prelim): 148
length of query: 732
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 711
effective length of database: 2,791,206,460
effective search space: 1984547793060
effective search space used: 1984547793060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)