BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU091748.1|AU091748 AU091748 Rice callus Oryza sativa (j... 145 2e-032
gb|CB669080.1|CB669080 OSJNEe01E24.f OSJNEe Oryza sativa (j... 145 2e-032
gb|CB669698.1|CB669698 OSJNEe02G06.f OSJNEe Oryza sativa (j... 145 2e-032
gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) c... 145 2e-032
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 145 2e-032
ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Oz... 145 2e-032
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 145 2e-032
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 145 2e-032
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 145 2e-032
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 145 2e-032
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 145 2e-032
gb|AU091600.1|AU091600 AU091600 Rice callus Oryza sativa (j... 101 2e-019
emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC O... 40 0.77
ref|NT_107151.1| Oryza sativa (japonica cultivar-group) 40 0.77
gb|AACV01024001.1| Oryza sativa (japonica cultivar-group) c... 40 0.77
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.77
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.77
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 40 0.77
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 40 0.77
>gb|AU091748.1|AU091748 AU091748 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11808, mRNA sequence
Length = 639
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 105 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 164
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 165 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 224
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 225 cagctgttacctcagttcttgaatccattc 254
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cgcatttggaatgagacttg 173
||||||||||||||||||||
Sbjct: 311 cgcatttggaatgagacttg 330
>gb|CB669080.1|CB669080 OSJNEe01E24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01E24 5', mRNA sequence
Length = 732
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 459 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 518
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 519 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 578
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 579 cagctgttacctcagttcttgaatccattc 608
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cgcatttggaatgagacttg 173
||||||||||||||||||||
Sbjct: 665 cgcatttggaatgagacttg 684
>gb|CB669698.1|CB669698 OSJNEe02G06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02G06 5', mRNA sequence
Length = 772
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 411 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 470
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 471 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 530
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 531 cagctgttacctcagttcttgaatccattc 560
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cgcatttggaatgagacttg 173
||||||||||||||||||||
Sbjct: 617 cgcatttggaatgagacttg 636
>gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000520, whole
genome shotgun sequence
Length = 15554
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 9237 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 9178
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 9177 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 9118
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 9117 cagctgttacctcagttcttgaatccattc 9088
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 8546 ttcagtcgcatttggaatgagacttg 8521
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 7353101 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 7353042
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 7353041 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 7352982
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 7352981 cagctgttacctcagttcttgaatccattc 7352952
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 7352410 ttcagtcgcatttggaatgagacttg 7352385
>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA
Length = 1671
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 416 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 475
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 476 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 535
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 536 cagctgttacctcagttcttgaatccattc 565
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cgcatttggaatgagacttg 173
||||||||||||||||||||
Sbjct: 622 cgcatttggaatgagacttg 641
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 7352941 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 7352882
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 7352881 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 7352822
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 7352821 cagctgttacctcagttcttgaatccattc 7352792
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 7352250 ttcagtcgcatttggaatgagacttg 7352225
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 16347 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 16288
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 16287 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 16228
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 16227 cagctgttacctcagttcttgaatccattc 16198
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 15656 ttcagtcgcatttggaatgagacttg 15631
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 7432280 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 7432221
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 7432220 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 7432161
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 7432160 cagctgttacctcagttcttgaatccattc 7432131
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 7431589 ttcagtcgcatttggaatgagacttg 7431564
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 7432280 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 7432221
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 7432220 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 7432161
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 7432160 cagctgttacctcagttcttgaatccattc 7432131
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 7431589 ttcagtcgcatttggaatgagacttg 7431564
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 145 bits (73), Expect = 2e-032
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct: 7355319 agatctgtatcacgggaagcacatctgcagggttacaccaaattcttccatggttgtact 7355260
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||||||||| || |
Sbjct: 7355259 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagaggctgcgaaac 7355200
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| ||||| ||||||||||| ||||
Sbjct: 7355199 cagctgttacctcagttcttgaatccattc 7355170
Score = 44.1 bits (22), Expect = 0.049
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 148 ttcagccgcatttggaatgagacttg 173
||||| ||||||||||||||||||||
Sbjct: 7354628 ttcagtcgcatttggaatgagacttg 7354603
>gb|AU091600.1|AU091600 AU091600 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60801, mRNA sequence
Length = 334
Score = 101 bits (51), Expect = 2e-019
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 1 agatctgtatcacgggaagcacatctgctggcctacaccagattcttccatggttgtatt 60
|||||||||| |||||||||||||| | || |||| || |||||||||||||||||
Sbjct: 230 agatctgtatnacgggaagcacatcnncagggttacancaaattcttccatggttgtacn 171
Query: 61 atcacaatgtcattggtgtttcacatttctttctattagttgaaggagaggctgcaaagc 120
| ||||| ||||| ||||||||||| || || || || ||||||||||| ||||| || |
Sbjct: 170 accacaaggtcatcggtgtttcacactttttcctttttgttgaaggagangctgcgaaac 111
Query: 121 cagctnnnacctctgttcttgaatctattc 150
||||| || || ||||||||||| ||||
Sbjct: 110 cagctgttacatcagttcttgaatccattc 81
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 154 cgcatttggaatgagacttg 173
||||||||||||||||||||
Sbjct: 24 cgcatttggaatgagacttg 5
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 145539
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 6501 ttgaaggagaggctgcaaag 6482
>ref|NT_107151.1| Oryza sativa (japonica cultivar-group)
Length = 901339
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 894839 ttgaaggagaggctgcaaag 894858
>gb|AACV01024001.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024001, whole
genome shotgun sequence
Length = 41247
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 20968 ttgaaggagaggctgcaaag 20949
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 2725530 ttgaaggagaggctgcaaag 2725549
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 2725530 ttgaaggagaggctgcaaag 2725549
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 2863946 ttgaaggagaggctgcaaag 2863965
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 40.1 bits (20), Expect = 0.77
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 ttgaaggagaggctgcaaag 119
||||||||||||||||||||
Sbjct: 2863890 ttgaaggagaggctgcaaag 2863909
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 279,090
Number of Sequences: 438736
Number of extensions: 279090
Number of successful extensions: 5856
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5738
Number of HSP's gapped (non-prelim): 117
length of query: 352
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 332
effective length of database: 2,791,645,196
effective search space: 926826205072
effective search space used: 926826205072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)