BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF12e06.yg.2.1
(561 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC O... 184 3e-044
emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC O... 184 3e-044
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 184 3e-044
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 184 3e-044
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 184 3e-044
gb|AQ868063.1|AQ868063 nbeb0017F16r CUGI Rice BAC Library (... 176 8e-042
gb|AQ868064.1|AQ868064 nbeb0017F18r CUGI Rice BAC Library (... 176 8e-042
gb|CF324065.1|CF324065 HDN--05-I14.g1 OsHDAC1-overexpressin... 176 8e-042
dbj|AK105411.1| Oryza sativa (japonica cultivar-group) cDNA... 176 8e-042
gb|AC123519.2| Oryza sativa (japonica cultivar-group) chrom... 176 8e-042
ref|NT_107123.1| Oryza sativa (japonica cultivar-group) 176 8e-042
gb|AACV01022269.1| Oryza sativa (japonica cultivar-group) c... 176 8e-042
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 176 8e-042
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 176 8e-042
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 176 8e-042
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 176 8e-042
gb|AACV01023888.1| Oryza sativa (japonica cultivar-group) c... 168 2e-039
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
ref|NT_107207.1| Oryza sativa (japonica cultivar-group) 46 0.020
gb|AC134342.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|AACV01011818.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.020
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 126974
Score = 184 bits (93), Expect = 3e-044
Identities = 144/161 (89%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 9335 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 9276
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||
Sbjct: 9275 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggtggt 9216
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 9215 aaagtggtgggagctattcagttctgtgaagttaaattagg 9175
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 8825 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 8766
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 8765 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 8706
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 8705 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 8646
Query: 544 a 544
|
Sbjct: 8645 a 8645
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 9133 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 9079
>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 97056
Score = 184 bits (93), Expect = 3e-044
Identities = 144/161 (89%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 65623 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 65564
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||
Sbjct: 65563 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggtggt 65504
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 65503 aaagtggtgggagctattcagttctgtgaagttaaattagg 65463
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 65113 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 65054
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 65053 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 64994
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 64993 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 64934
Query: 544 a 544
|
Sbjct: 64933 a 64933
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 65421 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 65367
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 184 bits (93), Expect = 3e-044
Identities = 144/161 (89%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1070352 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1070293
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||
Sbjct: 1070292 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggtggt 1070233
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1070232 aaagtggtgggagctattcagttctgtgaagttaaattagg 1070192
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1069842 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1069783
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1069782 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1069723
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 1069722 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 1069663
Query: 544 a 544
|
Sbjct: 1069662 a 1069662
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1070150 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1070096
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 184 bits (93), Expect = 3e-044
Identities = 144/161 (89%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1070352 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1070293
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||
Sbjct: 1070292 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggtggt 1070233
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1070232 aaagtggtgggagctattcagttctgtgaagttaaattagg 1070192
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1069842 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1069783
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1069782 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1069723
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 1069722 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 1069663
Query: 544 a 544
|
Sbjct: 1069662 a 1069662
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1070150 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1070096
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 184 bits (93), Expect = 3e-044
Identities = 144/161 (89%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1070352 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1070293
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||
Sbjct: 1070292 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggtggt 1070233
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1070232 aaagtggtgggagctattcagttctgtgaagttaaattagg 1070192
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1069842 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1069783
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1069782 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1069723
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 1069722 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 1069663
Query: 544 a 544
|
Sbjct: 1069662 a 1069662
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1070150 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1070096
>gb|AQ868063.1|AQ868063 nbeb0017F16r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0017F16r, DNA sequence
Length = 450
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 429 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 370
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 369 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 310
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 309 aaagtggtgggagctattcagttctgtgaagttaaattagg 269
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 227 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 173
>gb|AQ868064.1|AQ868064 nbeb0017F18r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0017F18r, DNA sequence
Length = 440
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 418 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 359
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 358 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 299
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 298 aaagtggtgggagctattcagttctgtgaagttaaattagg 258
>gb|CF324065.1|CF324065 HDN--05-I14.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--05-I14, mRNA sequence
Length = 559
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Plus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 50 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 109
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 110 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 169
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 170 aaagtggtgggagctattcagttctgtgaagttaaattagg 210
Score = 107 bits (54), Expect = 6e-021
Identities = 137/162 (84%), Gaps = 2/162 (1%)
Strand = Plus / Plus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 399 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 458
Query: 424 gacatgat-tatggaatcagccatgtcgatatagagaaggctgctactctgcactacaat 482
|||||||| |||||| | || || ||||||| | | | ||| |||||| |||||||||
Sbjct: 459 gacatgatntatggagttagtcaaaccgatataaa-aggtctgttactctacactacaat 517
Query: 483 ggtgtgatgaaaccttggcttgacttggggatacttgattac 524
||||| ||||||||||||||||| ||||| |||| |||||||
Sbjct: 518 ggtgtcatgaaaccttggcttgatttgggcatacatgattac 559
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 252 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 306
>dbj|AK105411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G06, full
insert sequence
Length = 2799
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Plus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1595 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1654
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 1655 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 1714
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1715 aaagtggtgggagctattcagttctgtgaagttaaattagg 1755
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Plus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1944 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 2003
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 2004 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 2063
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 2064 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 2121
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1797 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1851
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0017B18, complete sequence
Length = 150279
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 34521 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 34462
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 34461 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 34402
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 34401 aaagtggtgggagctattcagttctgtgaagttaaattagg 34361
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 34011 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 33952
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 33951 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 33892
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 33891 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 33834
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 34319 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 34265
>ref|NT_107123.1| Oryza sativa (japonica cultivar-group)
Length = 646131
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 136997 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 136938
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 136937 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 136878
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 136877 aaagtggtgggagctattcagttctgtgaagttaaattagg 136837
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 136487 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 136428
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 136427 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 136368
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 136367 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 136310
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 136795 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 136741
>gb|AACV01022269.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022269, whole
genome shotgun sequence
Length = 37612
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 26877 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 26818
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 26817 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 26758
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 26757 aaagtggtgggagctattcagttctgtgaagttaaattagg 26717
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 26367 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 26308
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 26307 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 26248
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 26247 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 26190
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 26675 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 26621
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094
genomic scaffold, whole genome shotgun sequence
Length = 4775249
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 839747 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 839688
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 839687 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 839628
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 839627 aaagtggtgggagctattcagttctgtgaagttaaattagg 839587
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 839237 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 839178
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 839177 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 839118
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 839117 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 839060
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 839545 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 839491
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1142039 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1141980
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 1141979 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 1141920
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1141919 aaagtggtgggagctattcagttctgtgaagttaaattagg 1141879
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1141529 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1141470
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1141469 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1141410
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 1141409 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 1141352
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1141837 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1141783
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1138715 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1138656
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 1138655 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 1138596
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1138595 aaagtggtgggagctattcagttctgtgaagttaaattagg 1138555
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1138205 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1138146
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1138145 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1138086
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 1138085 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 1138028
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1138513 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1138459
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 176 bits (89), Expect = 8e-042
Identities = 143/161 (88%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1136436 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1136377
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatatgggtggt 134
||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||
Sbjct: 1136376 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctcaatatgggaggt 1136317
Query: 135 aaagtgattggagcagtccagttctgtggagtgagattagg 175
|||||| | ||||| | |||||||||| ||| | ||||||
Sbjct: 1136316 aaagtggtgggagctattcagttctgtgaagttaaattagg 1136276
Score = 147 bits (74), Expect = 7e-033
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1135926 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1135867
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1135866 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1135807
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaa 541
|||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 1135806 gtgtcatgaaaccttggcttgatttgggcatacatgattacaagggctactggaggaa 1135749
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1136234 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1136180
>gb|AACV01023888.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023888, whole
genome shotgun sequence
Length = 34464
Score = 168 bits (85), Expect = 2e-039
Identities = 134/149 (89%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 5977 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 6036
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatat-gggtgg 133
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||||
Sbjct: 6037 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctccatatggggtgg 6096
Query: 134 taaagtgattggagcagtccagttctgtg 162
||||||| | ||||| | ||||||||||
Sbjct: 6097 taaagtggtgggagctattcagttctgtg 6125
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Plus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 6488 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 6547
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 6548 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 6607
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 6608 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 6667
Query: 544 a 544
|
Sbjct: 6668 a 6668
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 6180 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 6234
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 168 bits (85), Expect = 2e-039
Identities = 134/149 (89%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1010985 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1010926
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatat-gggtgg 133
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||||
Sbjct: 1010925 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctccatatggggtgg 1010866
Query: 134 taaagtgattggagcagtccagttctgtg 162
||||||| | ||||| | ||||||||||
Sbjct: 1010865 taaagtggtgggagctattcagttctgtg 1010837
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1010474 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1010415
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1010414 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1010355
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 1010354 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 1010295
Query: 544 a 544
|
Sbjct: 1010294 a 1010294
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1010782 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1010728
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 168 bits (85), Expect = 2e-039
Identities = 134/149 (89%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 15 ggcctttcacatttcctcttgcctgaccttcttcctagcttgaatagagtagttgttctg 74
|||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 1010985 ggccattcacatttcctcctgcctgaccttcttcctagcttgaatagagttgtagttcta 1010926
Query: 75 gatgatgatttgattgtccagaaggacttgtcacctctatggaacctcgatat-gggtgg 133
||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||||
Sbjct: 1010925 gatgatgatttgattgtccagaaagacttgtcatctctgtggaacctccatatggggtgg 1010866
Query: 134 taaagtgattggagcagtccagttctgtg 162
||||||| | ||||| | ||||||||||
Sbjct: 1010865 taaagtggtgggagctattcagttctgtg 1010837
Score = 145 bits (73), Expect = 3e-032
Identities = 154/181 (85%)
Strand = Plus / Minus
Query: 364 tacttgcctttcaagacctggtatatcctttggaagattcatgggttgagtcaggccttg 423
|||||| ||||||||| || ||||||||||||||||||||||||| | ||||| ||||
Sbjct: 1010474 tacttgtctttcaagatttgatatatcctttggaagattcatgggtccaatcaggtcttg 1010415
Query: 424 gacatgattatggaatcagccatgtcgatatagagaaggctgctactctgcactacaatg 483
|||||||||||||| | || || ||||||| | | | ||| |||||| ||||||||||
Sbjct: 1010414 gacatgattatggagttagtcaaaccgatataaaaaggtctgttactctacactacaatg 1010355
Query: 484 gtgtgatgaaaccttggcttgacttggggatacttgattacaagaactactggaggaagt 543
|||| ||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||
Sbjct: 1010354 gtgtcatgaaaccttggcttgatttgggcatacatgattataagggctactggaggaagt 1010295
Query: 544 a 544
|
Sbjct: 1010294 a 1010294
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 217 attcatgtgtgtggttgtcgggcctgaatgtcattgaattggataaatggaggga 271
|||||||||||||||| || || |||||||| ||||| || | |||||||||||
Sbjct: 1010782 attcatgtgtgtggttatctggtctgaatgttgttgaactgaaaaaatggaggga 1010728
>ref|NT_107207.1| Oryza sativa (japonica cultivar-group)
Length = 584274
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttgttctggatgatgatttgatt 89
|||||||||||||||||||||||
Sbjct: 8359 ttgttctggatgatgatttgatt 8381
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0053E01, complete sequence
Length = 180426
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttgttctggatgatgatttgatt 89
|||||||||||||||||||||||
Sbjct: 8359 ttgttctggatgatgatttgatt 8381
>gb|AACV01011818.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011818, whole
genome shotgun sequence
Length = 20876
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttgttctggatgatgatttgatt 89
|||||||||||||||||||||||
Sbjct: 11180 ttgttctggatgatgatttgatt 11202
>gb|CH401205.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000042
genomic scaffold, whole genome shotgun sequence
Length = 2493951
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttgttctggatgatgatttgatt 89
|||||||||||||||||||||||
Sbjct: 423043 ttgttctggatgatgatttgatt 423065
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttgttctggatgatgatttgatt 89
|||||||||||||||||||||||
Sbjct: 15229305 ttgttctggatgatgatttgatt 15229327
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 ttgttctggatgatgatttgatt 89
|||||||||||||||||||||||
Sbjct: 15616255 ttgttctggatgatgatttgatt 15616277
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 689,778
Number of Sequences: 438736
Number of extensions: 689778
Number of successful extensions: 12940
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12606
Number of HSP's gapped (non-prelim): 315
length of query: 561
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 540
effective length of database: 2,791,206,460
effective search space: 1507251488400
effective search space used: 1507251488400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)