BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK066652.1| Oryza sativa (japonica cultivar-group) cDNA... 759 0.0
dbj|AK099383.1| Oryza sativa (japonica cultivar-group) cDNA... 759 0.0
ref|XM_469396.1| Oryza sativa (japonica cultivar-group), mRNA 759 0.0
gb|CB661683.1|CB661683 OSJNEd04O22.f OSJNEd Oryza sativa (j... 753 0.0
gb|CB676948.1|CB676948 OSJNEe13H24.f OSJNEe Oryza sativa (j... 509 e-141
gb|BP184840.1|BP184840 BP184840 pNS rice panicle cDNA, flow... 458 e-126
gb|BP184856.1|BP184856 BP184856 pNS rice callus cDNA Oryza ... 426 e-116
gb|CF324365.1|CF324365 HDN--06-F11.g1 OsHDAC1-overexpressin... 317 1e-083
gb|C72881.1|C72881 C72881 Rice panicle at flowering stage O... 285 5e-074
gb|D40066.1|D40066 RICS1803A Rice shoot Oryza sativa (japon... 260 3e-066
gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 ... 149 7e-033
gb|AACV01007717.1| Oryza sativa (japonica cultivar-group) c... 149 7e-033
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 149 7e-033
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 149 7e-033
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 149 7e-033
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 149 7e-033
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 149 7e-033
gb|AQ688306.1|AQ688306 nbxb0077K22f CUGI Rice BAC Library O... 147 3e-032
gb|AQ272488.1|AQ272488 nbxb0028E13r CUGI Rice BAC Library O... 143 4e-031
gb|AU097063.1|AU097063 AU097063 Rice shoot Oryza sativa (ja... 123 4e-025
gb|AQ330142.1|AQ330142 nbxb0046H07f CUGI Rice BAC Library O... 92 1e-015
gb|BP184857.1|BP184857 BP184857 pNS rice callus cDNA Oryza ... 48 0.020
gb|AACV01007718.1| Oryza sativa (japonica cultivar-group) c... 48 0.020
gb|AU068085.1|AU068085 AU068085 Rice callus Oryza sativa (j... 46 0.078
gb|CB655518.1|CB655518 OSJNEc09A11.r OSJNEc Oryza sativa (j... 46 0.078
gb|CF292424.1|CF292424 30DGS--01-D24.g1 Rice leaf plasmid c... 46 0.078
gb|CF292528.1|CF292528 30DGS--01-G05.b1 Rice leaf plasmid c... 46 0.078
gb|CF292689.1|CF292689 30DGS--01-J18.b1 Rice leaf plasmid c... 46 0.078
gb|CF293253.1|CF293253 30DGS--02-F24.b1 Rice leaf plasmid c... 46 0.078
gb|CF313167.1|CF313167 HD--01-D08.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF315031.1|CF315031 HD--03-M19.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF316137.1|CF316137 HD--05-F02.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF318241.1|CF318241 HD--08-E18.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF318565.1|CF318565 HD--08-L20.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF319104.1|CF319104 HD--09-H22.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF319674.1|CF319674 HD--10-E07.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF321798.1|CF321798 HD--13-C21.b1 OsHDAC1-overexpressing... 46 0.078
gb|CF329997.1|CF329997 NACL--05-I16.b1 Rice callus plasmid ... 46 0.078
gb|CF337079.1|CF337079 JMT--07-G04.b1 AtJMT-overexpressing ... 46 0.078
gb|CV733821.1|CV733821 FLO--08-O13.g1 Rice flower lambda ph... 46 0.078
dbj|AK066924.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.078
dbj|AK104800.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.078
gb|AC108498.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.078
gb|AC137001.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.078
gb|AACV01011173.1| Oryza sativa (japonica cultivar-group) c... 46 0.078
gb|AACV01018982.1| Oryza sativa (japonica cultivar-group) c... 46 0.078
ref|XM_483759.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.078
ref|NT_107225.1| Oryza sativa (japonica cultivar-group) 46 0.078
ref|XM_507333.1| PREDICTED Oryza sativa (japonica cultivar-... 46 0.078
dbj|AP005524.3| Oryza sativa (japonica cultivar-group) geno... 46 0.078
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.078
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.078
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.078
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.078
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.078
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.078
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.078
>dbj|AK066652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069A12, full
insert sequence
Length = 2199
Score = 759 bits (383), Expect = 0.0
Identities = 689/791 (87%)
Strand = Plus / Plus
Query: 2 cctgcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtc 61
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 87 cctgcgggcaagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtg 146
Query: 62 aactacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtcttt 121
|| |||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||||
Sbjct: 147 aagtacctgcagattagcctcgcaaccttcaggaagctatgcattctcaagggcgtcttt 206
Query: 122 ccacgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggat 181
|| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggat 266
Query: 182 attgcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcga 241
||||| ||||| || ||||| || ||||| |||||||| || || || |||||||| |
Sbjct: 267 attgccttcctggcccatgatcccttgattgagaagtttagagaaatcaaggtccacagg 326
Query: 242 aggaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaat 301
| |||||| |||||||| ||||||||||||| | |||||||||||||| | |||||
Sbjct: 327 aagaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaac 386
Query: 302 cggccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgat 361
|| |||||||||||||| ||||| |||||| | |||||||| |||||||| || ||||||
Sbjct: 387 cgaccaccaacttacaaacttgacaggcttattcttgaaagatatccaacttttgttgat 446
Query: 362 gctcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgct 421
|||||||||||||||||||| ||||| |||||||||||||| ||||| || || ||||||
Sbjct: 447 gctcttcgtgacttggatgattgcctaacaatggtgcatctttttgctgcgttgcctgct 506
Query: 422 gttgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaa 481
||||| ||||||||||| | || | || || ||||| ||||||||||| |||||||||
Sbjct: 507 gttgaaggtgaacgtgtgcaagttcagcggattcataattgccgcaggttgagccatgaa 566
Query: 482 tggcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggc 541
||||||||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||||
Sbjct: 567 tggcaagcatatatatctcgaactcattccctgcgaaagacatttatatccgtcaagggc 626
Query: 542 atatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctctt 601
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 627 atatattatcaagctgaagttcaaggtcaaaagatcacctggctaactccacatgctctt 686
Query: 602 cagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctat 661
|||||||| ||||||||||| ||||| ||||||||||||||| | ||| | |||||||||
Sbjct: 687 cagcaagttttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctat 746
Query: 662 gagactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcct 721
||||| ||||| |||||| | |||||||| || || ||||| ||||||||||||||||||
Sbjct: 747 gagacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcct 806
Query: 722 cctattctggatccacgtctggaagctttagctgctgagctctatgcattgtgccgatac 781
||| |||||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 807 cctgttctggatcctcgtttggaagctttagcttctgagctctatgcgttgtgccggtac 866
Query: 782 atgtctgctgg 792
|||||| ||||
Sbjct: 867 atgtcttctgg 877
Score = 505 bits (255), Expect = e-140
Identities = 564/667 (84%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 936 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 995
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 996 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 1055
Query: 1016 gcagatgatgatgatactaaagattgtaaaggtttatttaagaacttaaagttctacttg 1075
||||| || | |||| | ||||| || | ||||||| || ||| | ||||||||| |
Sbjct: 1056 gcagacgacgctgatgccaaagaatgcaggagtttattcaaaaacctgaagttctaccta 1115
Query: 1076 agtcgagaggtgcctagggagtccctgttatttataattccagcgtttggagggactgtt 1135
||||| |||||||||||||| || || |||||||| |||||||| ||||| || || |||
Sbjct: 1116 agtcgtgaggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtt 1175
Query: 1136 tcatgggaaggagaaggagctccatttaaagaaatagacgaagatatcactcaccagatt 1195
||||||||||||||||||||||| ||| | || | ||| ||||| |||||||| ||||||
Sbjct: 1176 tcatgggaaggagaaggagctccttttgatgagacagatgaagacatcactcatcagatt 1235
Query: 1196 gttgataggccgacacaaagccatgttttcctctccagggagtatgttcaaccacagtgg 1255
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1236 gttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaaccacagtgg 1295
Query: 1256 gtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgttggaaga 1315
| | |||||| || |||||||| ||||||||||| |||||||||||| |||| || ||
Sbjct: 1296 atatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgtcgggagg 1355
Query: 1316 gtacctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgag 1375
|| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1356 gtgcctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgag 1415
Query: 1376 tatgcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttcca 1435
||||||||||| || |||||||| ||||||||||||| | ||||||||||||| |||
Sbjct: 1416 tatgcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgcca 1475
Query: 1436 ggtattggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagct 1495
|| | || || |||||| | || ||||||||||||| ||||| || |||||| |||
Sbjct: 1476 agtttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagag 1535
Query: 1496 tctaacgaagctgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgat 1555
||||| ||| |||||| |||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 1536 tctaatgaaattgctgacaagaagaggaagttggagatgctagagaagcagtaccacgat 1595
Query: 1556 gaactga 1562
|| ||||
Sbjct: 1596 gagctga 1602
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1755 atgtctcgcaagcagagaggcctt 1778
>dbj|AK099383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F24, full
insert sequence
Length = 2131
Score = 759 bits (383), Expect = 0.0
Identities = 689/791 (87%)
Strand = Plus / Plus
Query: 2 cctgcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtc 61
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 87 cctgcgggcaagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtg 146
Query: 62 aactacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtcttt 121
|| |||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||||
Sbjct: 147 aagtacctgcagattagcctcgcaaccttcaggaagctatgcattctcaagggcgtcttt 206
Query: 122 ccacgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggat 181
|| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggat 266
Query: 182 attgcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcga 241
||||| ||||| || ||||| || ||||| |||||||| || || || |||||||| |
Sbjct: 267 attgccttcctggcccatgatcccttgattgagaagtttagagaaatcaaggtccacagg 326
Query: 242 aggaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaat 301
| |||||| |||||||| ||||||||||||| | |||||||||||||| | |||||
Sbjct: 327 aagaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaac 386
Query: 302 cggccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgat 361
|| |||||||||||||| ||||| |||||| | |||||||| |||||||| || ||||||
Sbjct: 387 cgaccaccaacttacaaacttgacaggcttattcttgaaagatatccaacttttgttgat 446
Query: 362 gctcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgct 421
|||||||||||||||||||| ||||| |||||||||||||| ||||| || || ||||||
Sbjct: 447 gctcttcgtgacttggatgattgcctaacaatggtgcatctttttgctgcgttgcctgct 506
Query: 422 gttgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaa 481
||||| ||||||||||| | || | || || ||||| ||||||||||| |||||||||
Sbjct: 507 gttgaaggtgaacgtgtgcaagttcagcggattcataattgccgcaggttgagccatgaa 566
Query: 482 tggcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggc 541
||||||||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||||
Sbjct: 567 tggcaagcatatatatctcgaactcattccctgcgaaagacatttatatccgtcaagggc 626
Query: 542 atatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctctt 601
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 627 atatattatcaagctgaagttcaaggtcaaaagatcacctggctaactccacatgctctt 686
Query: 602 cagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctat 661
|||||||| ||||||||||| ||||| ||||||||||||||| | ||| | |||||||||
Sbjct: 687 cagcaagttttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctat 746
Query: 662 gagactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcct 721
||||| ||||| |||||| | |||||||| || || ||||| ||||||||||||||||||
Sbjct: 747 gagacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcct 806
Query: 722 cctattctggatccacgtctggaagctttagctgctgagctctatgcattgtgccgatac 781
||| |||||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 807 cctgttctggatcctcgtttggaagctttagcttctgagctctatgcgttgtgccggtac 866
Query: 782 atgtctgctgg 792
|||||| ||||
Sbjct: 867 atgtcttctgg 877
Score = 498 bits (251), Expect = e-138
Identities = 563/667 (84%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 936 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 995
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 996 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 1055
Query: 1016 gcagatgatgatgatactaaagattgtaaaggtttatttaagaacttaaagttctacttg 1075
||||| || | |||| | ||||| || | ||||||| || ||| | ||||||||| |
Sbjct: 1056 gcagacgacgctgatgccaaagaatgcaggagtttattcaaaaacctgaagttctaccta 1115
Query: 1076 agtcgagaggtgcctagggagtccctgttatttataattccagcgtttggagggactgtt 1135
||||| |||||||||||||| || || |||||||| |||||||| ||||| || || |||
Sbjct: 1116 agtcgtgaggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtt 1175
Query: 1136 tcatgggaaggagaaggagctccatttaaagaaatagacgaagatatcactcaccagatt 1195
||||||||||||||||||||||| ||| | || | ||| ||||| |||||||| ||||||
Sbjct: 1176 tcatgggaaggagaaggagctccttttgatgagacagatgaagacatcactcatcagatt 1235
Query: 1196 gttgataggccgacacaaagccatgttttcctctccagggagtatgttcaaccacagtgg 1255
|||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1236 gttgatagaccgacccaaagccactttttcctctctagggagtatgttcaaccacagtgg 1295
Query: 1256 gtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgttggaaga 1315
| | |||||| || |||||||| ||||||||||| |||||||||||| |||| || ||
Sbjct: 1296 atatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgtcgggagg 1355
Query: 1316 gtacctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgag 1375
|| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1356 gtgcctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgag 1415
Query: 1376 tatgcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttcca 1435
||||||||||| || |||||||| ||||||||||||| | ||||||||||||| |||
Sbjct: 1416 tatgcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgcca 1475
Query: 1436 ggtattggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagct 1495
|| | || || |||||| | || ||||||||||||| ||||| || |||||| |||
Sbjct: 1476 agtttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagag 1535
Query: 1496 tctaacgaagctgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgat 1555
||||| ||| |||||| |||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 1536 tctaatgaaattgctgacaagaagaggaagttggagatgctagagaagcagtaccacgat 1595
Query: 1556 gaactga 1562
|| ||||
Sbjct: 1596 gagctga 1602
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1755 atgtctcgcaagcagagaggcctt 1778
>ref|XM_469396.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2063
Score = 759 bits (383), Expect = 0.0
Identities = 689/791 (87%)
Strand = Plus / Plus
Query: 2 cctgcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtc 61
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 73 cctgcgggcaagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtg 132
Query: 62 aactacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtcttt 121
|| |||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||||
Sbjct: 133 aagtacctgcagattagcctcgcaaccttcaggaagctatgcattctcaagggcgtcttt 192
Query: 122 ccacgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggat 181
|| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 193 ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggat 252
Query: 182 attgcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcga 241
||||| ||||| || ||||| || ||||| |||||||| || || || |||||||| |
Sbjct: 253 attgccttcctggcccatgatcccttgattgagaagtttagagaaatcaaggtccacagg 312
Query: 242 aggaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaat 301
| |||||| |||||||| ||||||||||||| | |||||||||||||| | |||||
Sbjct: 313 aagaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaac 372
Query: 302 cggccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgat 361
|| |||||||||||||| ||||| |||||| | |||||||| |||||||| || ||||||
Sbjct: 373 cgaccaccaacttacaaacttgacaggcttattcttgaaagatatccaacttttgttgat 432
Query: 362 gctcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgct 421
|||||||||||||||||||| ||||| |||||||||||||| ||||| || || ||||||
Sbjct: 433 gctcttcgtgacttggatgattgcctaacaatggtgcatctttttgctgcgttgcctgct 492
Query: 422 gttgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaa 481
||||| ||||||||||| | || | || || ||||| ||||||||||| |||||||||
Sbjct: 493 gttgaaggtgaacgtgtgcaagttcagcggattcataattgccgcaggttgagccatgaa 552
Query: 482 tggcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggc 541
||||||||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||||
Sbjct: 553 tggcaagcatatatatctcgaactcattccctgcgaaagacatttatatccgtcaagggc 612
Query: 542 atatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctctt 601
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 613 atatattatcaagctgaagttcaaggtcaaaagatcacctggctaactccacatgctctt 672
Query: 602 cagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctat 661
|||||||| ||||||||||| ||||| ||||||||||||||| | ||| | |||||||||
Sbjct: 673 cagcaagttttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctat 732
Query: 662 gagactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcct 721
||||| ||||| |||||| | |||||||| || || ||||| ||||||||||||||||||
Sbjct: 733 gagacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcct 792
Query: 722 cctattctggatccacgtctggaagctttagctgctgagctctatgcattgtgccgatac 781
||| |||||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 793 cctgttctggatcctcgtttggaagctttagcttctgagctctatgcgttgtgccggtac 852
Query: 782 atgtctgctgg 792
|||||| ||||
Sbjct: 853 atgtcttctgg 863
Score = 505 bits (255), Expect = e-140
Identities = 564/667 (84%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 922 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 981
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 982 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 1041
Query: 1016 gcagatgatgatgatactaaagattgtaaaggtttatttaagaacttaaagttctacttg 1075
||||| || | |||| | ||||| || | ||||||| || ||| | ||||||||| |
Sbjct: 1042 gcagacgacgctgatgccaaagaatgcaggagtttattcaaaaacctgaagttctaccta 1101
Query: 1076 agtcgagaggtgcctagggagtccctgttatttataattccagcgtttggagggactgtt 1135
||||| |||||||||||||| || || |||||||| |||||||| ||||| || || |||
Sbjct: 1102 agtcgtgaggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtt 1161
Query: 1136 tcatgggaaggagaaggagctccatttaaagaaatagacgaagatatcactcaccagatt 1195
||||||||||||||||||||||| ||| | || | ||| ||||| |||||||| ||||||
Sbjct: 1162 tcatgggaaggagaaggagctccttttgatgagacagatgaagacatcactcatcagatt 1221
Query: 1196 gttgataggccgacacaaagccatgttttcctctccagggagtatgttcaaccacagtgg 1255
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1222 gttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaaccacagtgg 1281
Query: 1256 gtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgttggaaga 1315
| | |||||| || |||||||| ||||||||||| |||||||||||| |||| || ||
Sbjct: 1282 atatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgtcgggagg 1341
Query: 1316 gtacctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgag 1375
|| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1342 gtgcctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgag 1401
Query: 1376 tatgcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttcca 1435
||||||||||| || |||||||| ||||||||||||| | ||||||||||||| |||
Sbjct: 1402 tatgcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgcca 1461
Query: 1436 ggtattggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagct 1495
|| | || || |||||| | || ||||||||||||| ||||| || |||||| |||
Sbjct: 1462 agtttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagag 1521
Query: 1496 tctaacgaagctgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgat 1555
||||| ||| |||||| |||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 1522 tctaatgaaattgctgacaagaagaggaagttggagatgctagagaagcagtaccacgat 1581
Query: 1556 gaactga 1562
|| ||||
Sbjct: 1582 gagctga 1588
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1741 atgtctcgcaagcagagaggcctt 1764
>gb|CB661683.1|CB661683 OSJNEd04O22.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd04O22 5', mRNA sequence
Length = 835
Score = 753 bits (380), Expect = 0.0
Identities = 688/791 (86%)
Strand = Plus / Plus
Query: 2 cctgcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtc 61
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 44 cctgcgggcaagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtg 103
Query: 62 aactacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtcttt 121
|| |||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||||
Sbjct: 104 aagtacctgcagattagcctcgcaaccttcaggaagctatgcattctcaagggcgtcttt 163
Query: 122 ccacgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggat 181
|| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 164 ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggat 223
Query: 182 attgcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcga 241
||||| ||||| || ||||| || ||||| |||||||| || || || |||||||| |
Sbjct: 224 attgccttcctggcccatgatcccttgattgagaagtttagagaaatcaaggtccacagg 283
Query: 242 aggaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaat 301
| |||||| |||||||| ||||||||||||| | |||||||||||||| | |||||
Sbjct: 284 aagaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaac 343
Query: 302 cggccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgat 361
|| |||||||||||||| ||||| |||||| | |||||||| |||||||| || ||||||
Sbjct: 344 cgaccaccaacttacaaacttgacaggcttattcttgaaagatatccaacttttgttgat 403
Query: 362 gctcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgct 421
|||||||||||||||||||| ||||| |||||||||||||| ||||| || || ||||||
Sbjct: 404 gctcttcgtgacttggatgattgcctaacaatggtgcatctttttgctgcgttgcctgct 463
Query: 422 gttgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaa 481
||||| ||||||||||| | || | || || ||||| ||||||||||| |||||||||
Sbjct: 464 gttgaaggtgaacgtgtgcaagttcagcggattcataattgccgcaggttgagccatgaa 523
Query: 482 tggcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggc 541
||||||||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||||
Sbjct: 524 tggcaagcatatatatctcgaactcattccctgcgaaagacatttatatccgtcaagggc 583
Query: 542 atatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctctt 601
||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 584 atatattatcaagctgaagttcaaggtcaaaagatcacctggctaactccacatgctctt 643
Query: 602 cagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctat 661
|||||||| ||||||||||| ||||| ||||||||||||||| | ||| | |||||||||
Sbjct: 644 cagcaagttttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctat 703
Query: 662 gagactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcct 721
||||| ||||| |||||| | ||||||| || || ||||| ||||||||||||||||||
Sbjct: 704 gagacacttctgggatttatanacttcaagctttaccattcgataaatgtaaattatcct 763
Query: 722 cctattctggatccacgtctggaagctttagctgctgagctctatgcattgtgccgatac 781
||| |||||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 764 cctgttctggatcctcgtttggaagctttagcttctgagctctatgcgttgtgccggtac 823
Query: 782 atgtctgctgg 792
|||||| ||||
Sbjct: 824 atgtcttctgg 834
>gb|CB676948.1|CB676948 OSJNEe13H24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13H24 5', mRNA sequence
Length = 802
Score = 509 bits (257), Expect = e-141
Identities = 437/497 (87%)
Strand = Plus / Plus
Query: 296 ttgaatcggccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattc 355
||||| || |||||||||||||| ||||| |||||| | |||||||| |||||||| ||
Sbjct: 2 ttgaaccgaccaccaacttacaaacttgacaggcttattcttgaaagatatccaactttt 61
Query: 356 gttgatgctcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcatta 415
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||
Sbjct: 62 gttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctttttgctgcgttg 121
Query: 416 cctgctgttgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagc 475
||||||||||| ||||||||||| | || | || || ||||| ||||||||||| |||
Sbjct: 122 cctgctgttgaaggtgaacgtgtgcaagttcagcggattcataattgccgcaggttgagc 181
Query: 476 catgaatggcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtg 535
||||||||||||||||| ||||| ||||| ||||| ||| | ||||||||||| |||||
Sbjct: 182 catgaatggcaagcatatatatctcgaactcattccctgcgaaagacatttatatccgtc 241
Query: 536 aagggcatatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcat 595
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 242 aagggcatatattatcaagctgaagttcaaggtcaaaagatcacctggctaactccacat 301
Query: 596 gctcttcagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaa 655
|||||||||||||| ||||||||||| ||||| ||||||||||||||| | ||| | |||
Sbjct: 302 gctcttcagcaagttttaactgatgacgttgacttcaatgtgatgcttacctttttggaa 361
Query: 656 ttctatgagactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaat 715
||||||||||| ||||| |||||| | |||||||| || || ||||| ||||||||||||
Sbjct: 362 ttctatgagacacttctgggatttataaacttcaagctttaccattcgataaatgtaaat 421
Query: 716 tatcctcctattctggatccacgtctggaagctttagctgctgagctctatgcattgtgc 775
||||||||| |||||||||| ||| |||||||||||||| ||||||||||||| ||||||
Sbjct: 422 tatcctcctgttctggatcctcgtttggaagctttagcttctgagctctatgcgttgtgc 481
Query: 776 cgatacatgtctgctgg 792
|| ||||||||| ||||
Sbjct: 482 cggtacatgtcttctgg 498
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 557 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 616
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 617 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 676
Query: 1016 gcagatgatgatgatactaaagattgtaaaggtttatttaagaacttaaagttctacttg 1075
||||| || | |||| | ||||| || | ||||||| || ||| | ||||||||| |
Sbjct: 677 gcagacgacgctgatgccaaagaatgcaggagtttattcaaaaacctgaagttctaccta 736
Query: 1076 agtcgagaggtgcctagggagtccctgttatttataattccagcgtttggagggactgtt 1135
||||| |||||||||||||| || || |||||||| |||||||| ||||| || || |||
Sbjct: 737 agtcgtgaggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtt 796
Query: 1136 tcatgg 1141
||||||
Sbjct: 797 tcatgg 802
>gb|BP184840.1|BP184840 BP184840 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 20YPG010, mRNA
sequence
Length = 655
Score = 458 bits (231), Expect = e-126
Identities = 532/631 (84%), Gaps = 1/631 (0%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 21 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 80
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 81 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 140
Query: 1016 gcagatgatgatgatactaaagattgtaaaggtttatttaagaacttaaagttctacttg 1075
||||| || | |||| | ||||| || | ||||||| || ||| | ||||||||| |
Sbjct: 141 gcagacgacgctgatgccaaagaatgcaggagtttattcaaaaacctgaagttctaccta 200
Query: 1076 agtcgagaggtgcctagggagtccctgttatttataattccagcgtttggagggactgtt 1135
||||| |||||||||||||| || || |||||||| |||||||| ||||| || || |||
Sbjct: 201 agtcgtgaggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtt 260
Query: 1136 tcatgggaaggagaaggagctccatttaaagaaatagacgaagatatcactcaccagatt 1195
||||||||||||||||||||||| ||| | || | ||| ||||| |||||||| ||||||
Sbjct: 261 tcatgggaaggagaaggagctccttttgatgagacagatgaagacatcactcatcagatt 320
Query: 1196 gttgataggccgacacaaagccatgttttcctctccagggagtatgttcaaccacagtgg 1255
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaaccacagtgg 380
Query: 1256 gtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgttggaaga 1315
| | |||||| || |||||||| ||||||||||| |||||||||||| |||| || ||
Sbjct: 381 atatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgtcgggagg 440
Query: 1316 gtacctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgag 1375
|| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 441 gtgcctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgag 500
Query: 1376 tatgcagagacaataaagaggctccaagctgctgctcgcaatgaggtg-ttgcctcttcc 1434
||||||||||| || |||||||| ||||||||||||| | ||||| |||||||| ||
Sbjct: 501 tatgcagagaccattaagaggctgcaagctgctgctcaaagccaggtgtttgcctctgcc 560
Query: 1435 aggtattggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagc 1494
| || | || || |||||| | || ||||||||||||| ||||| || |||||| |||
Sbjct: 561 aagtttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcaga 620
Query: 1495 ttctaacgaagctgctgaaaagaagaggaag 1525
||||| ||| |||||| ||||||||||||
Sbjct: 621 gtctaatgaaattgctgacaagaagaggaag 651
>gb|BP184856.1|BP184856 BP184856 pNS rice callus cDNA Oryza sativa (japonica cultivar-group)
cDNA clone 21C4AG010, mRNA sequence
Length = 713
Score = 426 bits (215), Expect = e-116
Identities = 491/583 (84%)
Strand = Plus / Plus
Query: 980 ctgatgaatcttgtagaagaatcaactgccgatgatgcagatgatgatgatactaaagat 1039
|||||| |||||||| ||||||| ||||| | ||||||||| || | |||| | |||||
Sbjct: 24 ctgatgcatcttgtacaagaatctactgctgctgatgcagacgacgctgatgccaaagaa 83
Query: 1040 tgtaaaggtttatttaagaacttaaagttctacttgagtcgagaggtgcctagggagtcc 1099
|| | ||||||| || ||| | ||||||||| | ||||| |||||||||||||| ||
Sbjct: 84 tgcaggagtttattcaaaaacctgaagttctacctaagtcgtgaggtgcctagggaatct 143
Query: 1100 ctgttatttataattccagcgtttggagggactgtttcatgggaaggagaaggagctcca 1159
|| |||||||| |||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct: 144 ctcttatttatcattccagcatttggtggtaccgtttcatgggaaggagaaggagctcct 203
Query: 1160 tttaaagaaatagacgaagatatcactcaccagattgttgataggccgacacaaagccat 1219
||| | || | ||| ||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 204 tttgatgagacagatgaagacatcactcatcagattgttgatagaccgacccaaagccac 263
Query: 1220 gttttcctctccagggagtatgttcaaccacagtgggtctttgattgtgtaaatgctcgt 1279
||||||||||| |||||||||||||||||||||||| | | |||||| || ||||||||
Sbjct: 264 gttttcctctctagggagtatgttcaaccacagtggatatatgattgcgtgaatgctcgc 323
Query: 1280 atcatattgccaacagaaggttatcttgttggaagagtacctccaccacatttgtctcct 1339
||||||||||| |||||||||||| |||| || || || |||||||||||||| |||||
Sbjct: 324 atcatattgccgacagaaggttatattgtcgggagggtgcctccaccacatttatctccc 383
Query: 1340 tttgtggacaatgatgccgagggctacatgcctgagtatgcagagacaataaagaggctc 1399
||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||
Sbjct: 384 tttgtggacaatgatgcagagggttacattcctgagtatgcagagaccattaagaggctg 443
Query: 1400 caagctgctgctcgcaatgaggtgttgcctcttccaggtattggtgatgaagatctagac 1459
||||||||||||| | ||||||||||||| ||| || | || || |||||| | ||
Sbjct: 444 caagctgctgctcaaagccaggtgttgcctctgccaagtttaggggacgaagatatggaa 503
Query: 1460 aattcactggtagcagcaatgatggatcgaacagcttctaacgaagctgctgaaaagaag 1519
||||||||||||| ||||| || |||||| ||| ||||| ||| |||||| ||||||
Sbjct: 504 aattcactggtagaggcaattattgatcgatcagagtctaatgaaattgctgacaagaag 563
Query: 1520 aggaagctggagatgctagagaagcaatacatcgatgaactga 1562
|||||| ||||||||||||||||||| ||| |||||| ||||
Sbjct: 564 aggaagttggagatgctagagaagcagtaccacgatgagctga 606
>gb|CF324365.1|CF324365 HDN--06-F11.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-F11, mRNA sequence
Length = 516
Score = 317 bits (160), Expect = 1e-083
Identities = 340/400 (85%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 117 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 176
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 177 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 236
Query: 1016 gcagatgatgatgatactaaagattgtaaaggtttatttaagaacttaaagttctacttg 1075
||||| || | |||| | ||||| || | ||||||| || ||| | ||||||||| |
Sbjct: 237 gcagacgacgctgatgccaaagaatgcaggagtttattcaaaaacctgaagttctaccta 296
Query: 1076 agtcgagaggtgcctagggagtccctgttatttataattccagcgtttggagggactgtt 1135
||||| |||||||||||||| || || |||||||| |||||||| ||||| || || |||
Sbjct: 297 agtcgtgaggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtt 356
Query: 1136 tcatgggaaggagaaggagctccatttaaagaaatagacgaagatatcactcaccagatt 1195
||||||||||||||||||||||| ||| | || | ||| ||||| |||||||| ||||||
Sbjct: 357 tcatgggaaggagaaggagctccttttgatgagacagatgaagacatcactcatcagatt 416
Query: 1196 gttgataggccgacacaaagccatgttttcctctccagggagtatgttcaaccacagtgg 1255
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 417 gttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaaccacagtgg 476
Query: 1256 gtctttgattgtgtaaatgctcgtatcatattgccaacag 1295
| | |||||| || |||||||| ||||||||||| ||||
Sbjct: 477 atatatgattgcgtgaatgctcgcatcatattgccgacag 516
Score = 69.9 bits (35), Expect = 5e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 742 ggaagctttagctgctgagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||||| ||||||||||||| |||||||| ||||||||| ||||
Sbjct: 8 ggaagctttagcttctgagctctatgcgttgtgccggtacatgtcttctgg 58
>gb|C72881.1|C72881 C72881 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2413_1A, mRNA sequence
Length = 460
Score = 285 bits (144), Expect = 5e-074
Identities = 330/387 (85%), Gaps = 4/387 (1%)
Strand = Plus / Plus
Query: 2 cctgcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtc 61
|||||||| ||||||||||| ||||| || || ||||||||||| ||||||||||||||
Sbjct: 73 cctgcgggcaagaagaaggaggggaacgcngcgaagtacatcaccaggaccaaggcggtg 132
Query: 62 aactacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtcttt 121
|| |||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||||
Sbjct: 133 aagtacctgcagattagcctcgcaaccttcaggaagctatgcattctcaagggcgtcttt 192
Query: 122 ccacgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggat 181
|| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 193 ccccgggatccaaagaagaaggtggaagggaaccacaagacctactaccacatgaaggat 252
Query: 182 attgcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcga 241
||||| ||||| || ||||| || ||||| |||||||| || || || |||||||| |
Sbjct: 253 attgccttcctggcccatgatcccttgattgagaagtttagagaaatcaaggtccacagg 312
Query: 242 aggaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggct-gttgaa 300
| |||||| |||||||| ||||||||||||| | |||||||||||||| | |||||
Sbjct: 313 aagaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattatttgaa 372
Query: 301 tcggccaccaacttacaagcttgataggcttgtccttgaaaggtatccaac-attcgttg 359
|| ||||| |||||||| ||||| |||||| |||||||||| ||||| || || ||||
Sbjct: 373 ccgaccacc-acttacaa-cttgacaggcttatccttgaaagatatcccacttttggttg 430
Query: 360 atgctcttcgtgacttggatgactgcc 386
|||| ||||||||||||||||| ||||
Sbjct: 431 atgcccttcgtgacttggatgattgcc 457
>gb|D40066.1|D40066 RICS1803A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 353
Score = 260 bits (131), Expect = 3e-066
Identities = 276/324 (85%), Gaps = 1/324 (0%)
Strand = Plus / Plus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 31 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 90
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgc 363
|||||||||||||| ||||| |||||| | |||||||| |||||||| || ||||||||
Sbjct: 91 accaccaacttacaaacttgacaggcttattcttgaaagatatccaacttttgttgatgc 150
Query: 364 tcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgt 423
|||||||||||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 151 tcttcgtgacttggatgattgcctaacaatggtgcatctttttgctgcgttgcctgctgt 210
Query: 424 tgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatg 483
||| ||||||||||| | || | || || ||||| ||||||| ||| ||||||||||
Sbjct: 211 tgaaggtgaacgtgtncaagttcagcggattcataattgccgca-gttgagccatgaatn 269
Query: 484 gcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcat 543
||||||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||||||
Sbjct: 270 gcaagcatatatatctcgaactcattccctgcgnaagacatttatatccgtcaagggcat 329
Query: 544 atattatcaggccgaagttcaagg 567
||||||||| || |||| ||||||
Sbjct: 330 atattatcaagctgaaggtcaagg 353
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
sequence
Length = 119329
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Minus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 71388 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 71329
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 71328 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 71269
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 71268 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 71209
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 71208 aatgaaattgctgacaagaagaggaag 71182
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 73682 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 73623
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 73622 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 73569
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 75259 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 75200
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 75199 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 75140
Query: 212 gagaagtt 219
||||||||
Sbjct: 75139 gagaagtt 75132
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Minus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 72057 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 71998
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 71997 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 71939
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Minus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 72677 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 72618
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 72617 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 72558
Query: 1016 gcaga 1020
|||||
Sbjct: 72557 gcaga 72553
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 74209 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 74150
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 74149 tttgctgcgttgcctgctgttgaaggtgaacgtgt 74115
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 73870 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 73811
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 73810 atatccgtcaagggcatatattatca 73785
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 73004 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 72945
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 72944 ctgttctggatcctcgtttggaagctttagct 72913
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 72379 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 72320
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 72319 aaggagaaggagctccttttgatgagacagatgaagacatcactca 72274
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 75656 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 75597
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 75596 cagattagcctcgcaa 75581
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 74390 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 74331
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 74330 accaccaacttacaaacttgacaggcttattcttgaaaggta 74289
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 70879 atgtctcgcaagcagagaggcctt 70856
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 72770 gagctctatgcgttgtgccggtacatgtcttctgg 72736
>gb|AACV01007717.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007717, whole
genome shotgun sequence
Length = 9636
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Minus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2326 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 2267
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 2266 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 2207
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 2206 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 2147
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 2146 aatgaaattgctgacaagaagaggaag 2120
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Minus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4620 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 4561
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 4560 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 4507
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 6197 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 6138
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 6137 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 6078
Query: 212 gagaagtt 219
||||||||
Sbjct: 6077 gagaagtt 6070
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Minus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 2995 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 2936
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 2935 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 2877
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Minus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 3615 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 3556
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 3555 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 3496
Query: 1016 gcaga 1020
|||||
Sbjct: 3495 gcaga 3491
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 5147 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 5088
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 5087 tttgctgcgttgcctgctgttgaaggtgaacgtgt 5053
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 4808 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 4749
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 4748 atatccgtcaagggcatatattatca 4723
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 3942 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 3883
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 3882 ctgttctggatcctcgtttggaagctttagct 3851
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 3317 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 3258
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 3257 aaggagaaggagctccttttgatgagacagatgaagacatcactca 3212
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 6594 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 6535
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 6534 cagattagcctcgcaa 6519
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 5328 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 5269
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 5268 accaccaacttacaaacttgacaggcttattcttgaaaggta 5227
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1817 atgtctcgcaagcagagaggcctt 1794
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 3708 gagctctatgcgttgtgccggtacatgtcttctgg 3674
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Plus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1044226 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 1044285
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 1044286 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 1044345
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 1044346 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 1044405
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 1044406 aatgaaattgctgacaagaagaggaag 1044432
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1041932 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 1041991
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 1041992 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 1042045
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 1040355 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 1040414
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 1040415 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 1040474
Query: 212 gagaagtt 219
||||||||
Sbjct: 1040475 gagaagtt 1040482
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1043557 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 1043616
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 1043617 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 1043675
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 1042937 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 1042996
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 1042997 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 1043056
Query: 1016 gcaga 1020
|||||
Sbjct: 1043057 gcaga 1043061
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1041405 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 1041464
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 1041465 tttgctgcgttgcctgctgttgaaggtgaacgtgt 1041499
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 1041744 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 1041803
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 1041804 atatccgtcaagggcatatattatca 1041829
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 1042610 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 1042669
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 1042670 ctgttctggatcctcgtttggaagctttagct 1042701
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 1043235 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 1043294
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 1043295 aaggagaaggagctccttttgatgagacagatgaagacatcactca 1043340
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 1039958 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 1040017
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 1040018 cagattagcctcgcaa 1040033
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 1041224 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 1041283
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 1041284 accaccaacttacaaacttgacaggcttattcttgaaaggta 1041325
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1044735 atgtctcgcaagcagagaggcctt 1044758
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 1042844 gagctctatgcgttgtgccggtacatgtcttctgg 1042878
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Plus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1521804 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 1521863
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 1521864 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 1521923
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 1521924 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 1521983
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 1521984 aatgaaattgctgacaagaagaggaag 1522010
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1519510 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 1519569
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 1519570 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 1519623
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 1517933 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 1517992
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 1517993 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 1518052
Query: 212 gagaagtt 219
||||||||
Sbjct: 1518053 gagaagtt 1518060
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1521135 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 1521194
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 1521195 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 1521253
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 1520515 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 1520574
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 1520575 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 1520634
Query: 1016 gcaga 1020
|||||
Sbjct: 1520635 gcaga 1520639
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1518983 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 1519042
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 1519043 tttgctgcgttgcctgctgttgaaggtgaacgtgt 1519077
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 1519322 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 1519381
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 1519382 atatccgtcaagggcatatattatca 1519407
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 1520188 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 1520247
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 1520248 ctgttctggatcctcgtttggaagctttagct 1520279
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 1520813 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 1520872
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 1520873 aaggagaaggagctccttttgatgagacagatgaagacatcactca 1520918
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 1517536 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 1517595
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 1517596 cagattagcctcgcaa 1517611
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 1518802 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 1518861
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 1518862 accaccaacttacaaacttgacaggcttattcttgaaaggta 1518903
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1525437 atgtctcgcaagcagagaggcctt 1525460
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 1522313 atgtctcgcaagcagagaggcctt 1522336
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 1520422 gagctctatgcgttgtgccggtacatgtcttctgg 1520456
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Plus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 28787967 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 28788026
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 28788027 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 28788086
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 28788087 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 28788146
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 28788147 aatgaaattgctgacaagaagaggaag 28788173
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 28785673 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 28785732
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 28785733 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 28785786
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 28784096 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 28784155
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 28784156 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 28784215
Query: 212 gagaagtt 219
||||||||
Sbjct: 28784216 gagaagtt 28784223
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 28787298 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 28787357
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 28787358 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 28787416
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 28786678 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 28786737
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 28786738 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 28786797
Query: 1016 gcaga 1020
|||||
Sbjct: 28786798 gcaga 28786802
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 28785146 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 28785205
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 28785206 tttgctgcgttgcctgctgttgaaggtgaacgtgt 28785240
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 28785485 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 28785544
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 28785545 atatccgtcaagggcatatattatca 28785570
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 28786351 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 28786410
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 28786411 ctgttctggatcctcgtttggaagctttagct 28786442
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 28786976 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 28787035
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 28787036 aaggagaaggagctccttttgatgagacagatgaagacatcactca 28787081
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 28783699 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 28783758
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 28783759 cagattagcctcgcaa 28783774
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 28784965 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 28785024
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 28785025 accaccaacttacaaacttgacaggcttattcttgaaaggta 28785066
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 28791600 atgtctcgcaagcagagaggcctt 28791623
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 28788476 atgtctcgcaagcagagaggcctt 28788499
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 28786585 gagctctatgcgttgtgccggtacatgtcttctgg 28786619
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Plus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 27833829 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 27833888
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 27833889 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 27833948
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 27833949 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 27834008
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 27834009 aatgaaattgctgacaagaagaggaag 27834035
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 27831535 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 27831594
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 27831595 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 27831648
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 27829958 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 27830017
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 27830018 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 27830077
Query: 212 gagaagtt 219
||||||||
Sbjct: 27830078 gagaagtt 27830085
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 27833160 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 27833219
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 27833220 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 27833278
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 27832540 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 27832599
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 27832600 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 27832659
Query: 1016 gcaga 1020
|||||
Sbjct: 27832660 gcaga 27832664
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 27831008 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 27831067
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 27831068 tttgctgcgttgcctgctgttgaaggtgaacgtgt 27831102
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 27831347 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 27831406
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 27831407 atatccgtcaagggcatatattatca 27831432
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 27832213 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 27832272
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 27832273 ctgttctggatcctcgtttggaagctttagct 27832304
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 27832838 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 27832897
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 27832898 aaggagaaggagctccttttgatgagacagatgaagacatcactca 27832943
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 27829561 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 27829620
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 27829621 cagattagcctcgcaa 27829636
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 27830827 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 27830886
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 27830887 accaccaacttacaaacttgacaggcttattcttgaaaggta 27830928
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 27834338 atgtctcgcaagcagagaggcctt 27834361
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 27832447 gagctctatgcgttgtgccggtacatgtcttctgg 27832481
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 149 bits (75), Expect = 7e-033
Identities = 174/207 (84%)
Strand = Plus / Plus
Query: 1319 cctccaccacatttgtctccttttgtggacaatgatgccgagggctacatgcctgagtat 1378
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 27742506 cctccaccacatttatctccctttgtggacaatgatgcagagggttacattcctgagtat 27742565
Query: 1379 gcagagacaataaagaggctccaagctgctgctcgcaatgaggtgttgcctcttccaggt 1438
|||||||| || |||||||| ||||||||||||| | ||||||||||||| ||| ||
Sbjct: 27742566 gcagagaccattaagaggctgcaagctgctgctcaaagccaggtgttgcctctgccaagt 27742625
Query: 1439 attggtgatgaagatctagacaattcactggtagcagcaatgatggatcgaacagcttct 1498
| || || |||||| | || ||||||||||||| ||||| || |||||| ||| |||
Sbjct: 27742626 ttaggggacgaagatatggaaaattcactggtagaggcaattattgatcgatcagagtct 27742685
Query: 1499 aacgaagctgctgaaaagaagaggaag 1525
|| ||| |||||| ||||||||||||
Sbjct: 27742686 aatgaaattgctgacaagaagaggaag 27742712
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 27740212 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 27740271
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 27740272 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 27740325
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 27738635 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 27738694
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 27738695 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 27738754
Query: 212 gagaagtt 219
||||||||
Sbjct: 27738755 gagaagtt 27738762
Score = 141 bits (71), Expect = 2e-030
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 27741837 cagattgttgatagaccgacccaaagccacgttttcctctctagggagtatgttcaacca 27741896
Query: 1250 cagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttatcttgt 1308
|||||| | | |||||| || |||||||| ||||||||||| |||||||||||| ||||
Sbjct: 27741897 cagtggatatatgattgcgtgaatgctcgcatcatattgccgacagaaggttatattgt 27741955
Score = 121 bits (61), Expect = 2e-024
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 896 aataaagcaagctcaaaagcagatgaatctgagctcagattagcacagcttcaacatcag 955
||||||| ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 27741217 aataaagagagctcaaaaacagatgagtctgaactcagattggcacaacttcaacaccag 27741276
Query: 956 ctcccaaccaatgaacctggtgcactgatgaatcttgtagaagaatcaactgccgatgat 1015
|||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| | ||||
Sbjct: 27741277 ctcccaactaatgaacctggagcgctgatgcatcttgtacaagaatctactgctgctgat 27741336
Query: 1016 gcaga 1020
|||||
Sbjct: 27741337 gcaga 27741341
Score = 117 bits (59), Expect = 3e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 344 tatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcatctg 403
|||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 27739685 tatccaacttttgttgatgctcttcgtgacttggatgattgcctaacaatggtgcatctt 27739744
Query: 404 tttgcggcattacctgctgttgacggtgaacgtgt 438
||||| || || ||||||||||| |||||||||||
Sbjct: 27739745 tttgctgcgttgcctgctgttgaaggtgaacgtgt 27739779
Score = 99.6 bits (50), Expect = 6e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 467 aggttaagccatgaatggcaagcatacatatcccgaacccattctctgaggaagacattt 526
||||| |||||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||
Sbjct: 27740024 aggttgagccatgaatggcaagcatatatatctcgaactcattccctgcgaaagacattt 27740083
Query: 527 atttccgtgaagggcatatattatca 552
|| ||||| |||||||||||||||||
Sbjct: 27740084 atatccgtcaagggcatatattatca 27740109
Score = 95.6 bits (48), Expect = 9e-017
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 663 agactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctc 722
|||| ||||| |||||| | |||||||| || || ||||| |||||||||||||||||||
Sbjct: 27740890 agacacttctgggatttataaacttcaagctttaccattcgataaatgtaaattatcctc 27740949
Query: 723 ctattctggatccacgtctggaagctttagct 754
|| |||||||||| ||| ||||||||||||||
Sbjct: 27740950 ctgttctggatcctcgtttggaagctttagct 27740981
Score = 91.7 bits (46), Expect = 1e-015
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 1083 aggtgcctagggagtccctgttatttataattccagcgtttggagggactgtttcatggg 1142
||||||||||||| || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct: 27741515 aggtgcctagggaatctctcttatttatcattccagcatttggtggtaccgtttcatggg 27741574
Query: 1143 aaggagaaggagctccatttaaagaaatagacgaagatatcactca 1188
|||||||||||||||| ||| | || | ||| ||||| ||||||||
Sbjct: 27741575 aaggagaaggagctccttttgatgagacagatgaagacatcactca 27741620
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 11 aagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaactacctg 70
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 27738238 aagaagaaggaggggaacgcggcgaagtacatcaccaggaccaaggcggtgaagtacctg 27738297
Query: 71 caagttagcctcgcaa 86
|| ||||||||||||
Sbjct: 27738298 cagattagcctcgcaa 27738313
Score = 83.8 bits (42), Expect = 4e-013
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 244 gaaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcg 303
|||||| |||||||| ||||||||||||| | |||||||||||||| | ||||| ||
Sbjct: 27739504 gaaggtcaaaaaggcgtttgctaagaaaaataaagatcttgcagacagattattgaaccg 27739563
Query: 304 gccaccaacttacaagcttgataggcttgtccttgaaaggta 345
|||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 27739564 accaccaacttacaaacttgacaggcttattcttgaaaggta 27739605
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 27743015 atgtctcgcaagcagagaggcctt 27743038
Score = 46.1 bits (23), Expect = 0.078
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 758 gagctctatgcattgtgccgatacatgtctgctgg 792
||||||||||| |||||||| ||||||||| ||||
Sbjct: 27741124 gagctctatgcgttgtgccggtacatgtcttctgg 27741158
>gb|AQ688306.1|AQ688306 nbxb0077K22f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0077K22f, DNA sequence
Length = 943
Score = 147 bits (74), Expect = 3e-032
Identities = 104/114 (91%)
Strand = Plus / Plus
Query: 551 caggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagta 610
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 89 caggctgaagttcaaggtcaaaagatcacctggctaactccacatgctcttcagcaagtt 148
Query: 611 ttaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||||||||| ||||| ||||||||||||||| | ||| | ||||||||||||
Sbjct: 149 ttaactgatgacgttgacttcaatgtgatgcttacctttttggaattctatgag 202
>gb|AQ272488.1|AQ272488 nbxb0028E13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0028E13r, DNA sequence
Length = 617
Score = 143 bits (72), Expect = 4e-031
Identities = 114/128 (89%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct: 156 aggaagctatgcattctcaagggcgtctttccccgggatccaaagaagaaggtggaaggg 215
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct: 216 aaccacaagacctactaccacatgaaggatattgccttcctggcccatgatcccttgatt 275
Query: 212 gagaagtt 219
||||||||
Sbjct: 276 gagaagtt 283
>gb|AU097063.1|AU097063 AU097063 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S1803, mRNA sequence
Length = 714
Score = 123 bits (62), Expect = 4e-025
Identities = 174/212 (82%)
Strand = Plus / Plus
Query: 1351 tgatgccgagggctacatgcctgagtatgcagagacaataaagaggctccaagctgctgc 1410
|||||| |||| ||||| ||||||||||||||| | || |||||||| |||||||||||
Sbjct: 13 tgatgcagaggnttacattcctgagtatgcagagnccattaagaggctgcaagctgctgc 72
Query: 1411 tcgcaatgaggtgttgcctcttccaggtattggtgatgaagatctagacaattcactggt 1470
|| | ||||||||||||| ||| || | || || |||||| | || |||||||||||
Sbjct: 73 tcaaagccaggtgttgcctctgccaagtttaggggacgaagatatggaaaattcactggt 132
Query: 1471 agcagcaatgatggatcgaacagcttctaacgaagctgctgaaaagaagaggaagctgga 1530
|| ||||| || |||||| ||| ||||| ||| |||||| |||||||||||| ||||
Sbjct: 133 agaggcaattattgatcgatcagagtctaatgaaattgctgacaagaagaggaagttgga 192
Query: 1531 gatgctagagaagcaatacatcgatgaactga 1562
||||||||||||||| ||| |||||| ||||
Sbjct: 193 gatgctagagaagcagtaccacgatgagctga 224
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 377 atgtctcgcaagcagagaggcctt 400
>gb|AQ330142.1|AQ330142 nbxb0046H07f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0046H07f, DNA sequence
Length = 750
Score = 91.7 bits (46), Expect = 1e-015
Identities = 83/94 (88%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 571 aaagatcacctggctaactccgcatgctcttcagcaagtattaactgatgatgttgattt 630
||||||||| ||| ||||||| |||||| |||||||||| ||||||||||| ||||| ||
Sbjct: 680 aaagatcac-tggttaactccacatgctattcagcaagttttaactgatgacgttgactt 622
Query: 631 caatgtgatgctttcttttctagaattctatgag 664
||||||||||||| | ||| | ||||||||||||
Sbjct: 621 caatgtgatgcttacctttttggaattctatgag 588
>gb|BP184857.1|BP184857 BP184857 pNS rice callus cDNA Oryza sativa (japonica cultivar-group)
cDNA clone 21C4AG010, mRNA sequence
Length = 516
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 116 atgtctcgcaagcagagaggcctt 139
>gb|AACV01007718.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007718, whole
genome shotgun sequence
Length = 3239
Score = 48.1 bits (24), Expect = 0.020
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1712 atgtctcgcaagcagagaggcctt 1735
||||||||||||||||||||||||
Sbjct: 308 atgtctcgcaagcagagaggcctt 331
>gb|AU068085.1|AU068085 AU068085 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11829_5A, mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 449 gccgatgatgcagatgatgatga 471
>gb|CB655518.1|CB655518 OSJNEc09A11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09A11 3', mRNA sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 580 gccgatgatgcagatgatgatga 558
>gb|CF292424.1|CF292424 30DGS--01-D24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-D24, mRNA sequence
Length = 438
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 409 gccgatgatgcagatgatgatga 431
>gb|CF292528.1|CF292528 30DGS--01-G05.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-G05, mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 440 gccgatgatgcagatgatgatga 462
>gb|CF292689.1|CF292689 30DGS--01-J18.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-J18, mRNA sequence
Length = 608
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 452 gccgatgatgcagatgatgatga 474
>gb|CF293253.1|CF293253 30DGS--02-F24.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-F24, mRNA sequence
Length = 639
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 446 gccgatgatgcagatgatgatga 468
>gb|CF313167.1|CF313167 HD--01-D08.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--01-D08, mRNA sequence
Length = 606
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 446 gccgatgatgcagatgatgatga 468
>gb|CF315031.1|CF315031 HD--03-M19.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-M19, mRNA sequence
Length = 574
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 419 gccgatgatgcagatgatgatga 441
>gb|CF316137.1|CF316137 HD--05-F02.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-F02, mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 418 gccgatgatgcagatgatgatga 440
>gb|CF318241.1|CF318241 HD--08-E18.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--08-E18, mRNA sequence
Length = 682
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 403 gccgatgatgcagatgatgatga 425
>gb|CF318565.1|CF318565 HD--08-L20.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--08-L20, mRNA sequence
Length = 596
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 403 gccgatgatgcagatgatgatga 425
>gb|CF319104.1|CF319104 HD--09-H22.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--09-H22, mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 460 gccgatgatgcagatgatgatga 482
>gb|CF319674.1|CF319674 HD--10-E07.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--10-E07, mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 411 gccgatgatgcagatgatgatga 433
>gb|CF321798.1|CF321798 HD--13-C21.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--13-C21, mRNA sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 473 gccgatgatgcagatgatgatga 495
>gb|CF329997.1|CF329997 NACL--05-I16.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--05-I16, mRNA
sequence
Length = 557
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 452 gccgatgatgcagatgatgatga 474
>gb|CF337079.1|CF337079 JMT--07-G04.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group) cDNA
clone JMT--07-G04, mRNA sequence
Length = 534
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 419 gccgatgatgcagatgatgatga 441
>gb|CV733821.1|CV733821 FLO--08-O13.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-O13,
mRNA sequence
Length = 528
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 484 gccgatgatgcagatgatgatga 506
>dbj|AK066924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D14, full
insert sequence
Length = 1188
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 510 gccgatgatgcagatgatgatga 532
>dbj|AK104800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A08, full
insert sequence
Length = 1144
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 466 gccgatgatgcagatgatgatga 488
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
complete sequence
Length = 148348
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatgat 1696
|||||||||||||||||||||||
Sbjct: 142620 aagaggaggatgatgatgatgat 142642
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0012L23, complete sequence
Length = 121659
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatgat 1696
|||||||||||||||||||||||
Sbjct: 47785 aagaggaggatgatgatgatgat 47807
>gb|AACV01011173.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011173, whole
genome shotgun sequence
Length = 18410
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatgat 1696
|||||||||||||||||||||||
Sbjct: 6953 aagaggaggatgatgatgatgat 6975
>gb|AACV01018982.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018982, whole
genome shotgun sequence
Length = 54373
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 22375 gccgatgatgcagatgatgatga 22397
>ref|XM_483759.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1144
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 466 gccgatgatgcagatgatgatga 488
>ref|NT_107225.1| Oryza sativa (japonica cultivar-group)
Length = 699699
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatgat 1696
|||||||||||||||||||||||
Sbjct: 625825 aagaggaggatgatgatgatgat 625847
>ref|XM_507333.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.8 mRNA
Length = 1187
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 509 gccgatgatgcagatgatgatga 531
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0562A06
Length = 154198
Score = 46.1 bits (23), Expect = 0.078
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1007 gccgatgatgcagatgatgatga 1029
|||||||||||||||||||||||
Sbjct: 28278 gccgatgatgcagatgatgatga 28256
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,697,406
Number of Sequences: 438736
Number of extensions: 3697406
Number of successful extensions: 40879
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39801
Number of HSP's gapped (non-prelim): 1049
length of query: 2118
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 2096
effective length of database: 2,790,767,724
effective search space: 5849449149504
effective search space used: 5849449149504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)