BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE36e08.yg.2.1
(352 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 458 e-127
gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) c... 458 e-127
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 458 e-127
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 458 e-127
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 458 e-127
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 458 e-127
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 458 e-127
gb|D39461.1|D39461 RICS0804A Rice shoot Oryza sativa (japon... 234 3e-059
dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA... 78 4e-012
dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA... 78 4e-012
gb|AACV01002605.1| Oryza sativa (japonica cultivar-group) c... 78 4e-012
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 78 4e-012
ref|NM_190416.1| Oryza sativa (japonica cultivar-group), p... 78 4e-012
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 78 4e-012
dbj|AP003734.3| Oryza sativa (japonica cultivar-group) geno... 78 4e-012
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 78 4e-012
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 78 4e-012
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 78 4e-012
dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA... 74 5e-011
emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC O... 74 5e-011
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 74 5e-011
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 74 5e-011
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 74 5e-011
emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC O... 68 3e-009
gb|AACV01022227.1| Oryza sativa (japonica cultivar-group) c... 68 3e-009
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 68 3e-009
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 68 3e-009
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 68 3e-009
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 68 3e-009
gb|AACV01023843.1| Oryza sativa (japonica cultivar-group) c... 58 3e-006
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 58 3e-006
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 58 3e-006
gb|AC105770.2| Oryza sativa (japonica cultivar-group) chrom... 50 8e-004
gb|AACV01012344.1| Oryza sativa (japonica cultivar-group) c... 50 8e-004
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 50 8e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 50 8e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 50 8e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 50 8e-004
gb|AC138198.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.19
gb|AACV01025928.1| Oryza sativa (japonica cultivar-group) C... 42 0.19
gb|CH401364.1| Oryza sativa (japonica cultivar-group) scaff... 42 0.19
gb|AC112658.4| Oryza sativa (japonica cultivar-group) chrom... 42 0.19
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0039F10, complete sequence
Length = 139714
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 74134 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 74075
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 74074 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 74015
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 74014 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 73955
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 73954 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 73895
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 73894 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 73835
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 73834 gttgttcatgctcgcgcc 73817
>gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006417, whole
genome shotgun sequence
Length = 7888
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Plus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5739 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 5798
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 5799 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 5858
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 5859 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 5918
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 5919 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 5978
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 5979 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 6038
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 6039 gttgttcatgctcgcgcc 6056
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1761498 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 1761439
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 1761438 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 1761379
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1761378 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 1761319
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 1761318 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 1761259
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1761258 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 1761199
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 1761198 gttgttcatgctcgcgcc 1761181
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10499784 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 10499725
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 10499724 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 10499665
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 10499664 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 10499605
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 10499604 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 10499545
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 10499544 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 10499485
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 10499484 gttgttcatgctcgcgcc 10499467
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10692146 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 10692087
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 10692086 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 10692027
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 10692026 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 10691967
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 10691966 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 10691907
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 10691906 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 10691847
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 10691846 gttgttcatgctcgcgcc 10691829
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10415682 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 10415623
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 10415622 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 10415563
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 10415562 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 10415503
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 10415502 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 10415443
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 10415442 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 10415383
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 10415382 gttgttcatgctcgcgcc 10415365
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 458 bits (231), Expect = e-127
Identities = 295/318 (92%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10417581 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 10417522
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 10417521 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 10417462
Query: 122 gtacctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgtt 181
|||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct: 10417461 gtacctgacgcggtacagcttggtgcccttcaccggctgccacagcgcgcgggggacgtt 10417402
Query: 182 ctgcgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgcc 241
||| ||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 10417401 ctgggaggtgaagtcgaagaacacgggtggcatcggcgggaagtcgtcggtgaacacgcc 10417342
Query: 242 ggggatgtggtggtagtgcgcctgcagcagggagacggtgtcggggagctggaacgacac 301
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 10417341 ggggatgtggtggtagtgcgcctgcaggagggagacggtgttggggagctggaacgacac 10417282
Query: 302 gnnnnncatgctcgcgcc 319
| ||||||||||||
Sbjct: 10417281 gttgttcatgctcgcgcc 10417264
>gb|D39461.1|D39461 RICS0804A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 251
Score = 234 bits (118), Expect = 3e-059
Identities = 133/138 (96%)
Strand = Plus / Minus
Query: 2 cgggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcat 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 143 cgggtcgtagttgccgaaccccgtggcgagcacgtagaagtggtagccgtggatgtgcat 84
Query: 62 ggggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgcc 121
||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 83 gggatgctcctcggcggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgcc 24
Query: 122 gtacctgacgcggtacag 139
||||||||||||||||||
Sbjct: 23 gtacctgacgcggtacag 6
>dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072C02, full
insert sequence
Length = 2023
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 1429 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 1370
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 1369 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 1319
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 1578 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 1519
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 1518 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 1459
>dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D07, full
insert sequence
Length = 1678
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 1084 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 1025
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 1024 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 974
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 1233 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 1174
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 1173 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 1114
>gb|AACV01002605.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002605, whole
genome shotgun sequence
Length = 51705
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 7007 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 7066
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 7067 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 7117
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 6858 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 6917
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 6918 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 6977
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 35478633 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 35478574
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 35478573 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 35478523
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 35478782 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 35478723
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 35478722 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 35478663
>ref|NM_190416.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1704
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 1317 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 1258
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 1257 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 1207
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 1466 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 1407
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 1406 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 1347
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 9926016 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 9925957
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 9925956 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 9925906
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 9926165 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 9926106
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 9926105 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 9926046
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088C09
Length = 154084
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 21912 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 21853
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 21852 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 21802
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 22061 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 22002
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 22001 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 21942
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 9682746 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 9682687
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 9682686 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 9682636
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 9682895 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 9682836
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 9682835 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 9682776
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 34884467 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 34884408
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 34884407 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 34884357
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 34884616 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 34884557
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 34884556 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 34884497
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 77.8 bits (39), Expect = 4e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 152 gacgggctgccacagcgcgcgcgggacgttctgcgaggtgaagtcgaagaacacgggcgg 211
||||||||||||||| ||| ||||||||||||| ||| ||||||| ||| |||||
Sbjct: 35397963 gacgggctgccacaggtagcgggggacgttctgcgccgtgtagtcgaactgcaccggcgg 35397904
Query: 212 gagcgccgggaagtcgtcggtgaacacgccggggatgtggtggtagtgcgc 262
| ||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 35397903 gtacgccgggaagtcggtggtgaacacgccggggatgccgtagtagtgcgc 35397853
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 3 gggtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatg 62
|||||| |||||||||| ||| ||| || | |||||||| ||||||||||||||| |||
Sbjct: 35398112 gggtcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatg 35398053
Query: 63 gggtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccg 122
||||| | ||| | | || ||||| |||||||| | |||||||||||||||| ||||
Sbjct: 35398052 gggtggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccg 35397993
>dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F06, full
insert sequence
Length = 1973
Score = 73.8 bits (37), Expect = 5e-011
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 1586 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 1527
Query: 70 cctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgtacctga 129
|||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||| |||
Sbjct: 1526 tctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttga 1467
Query: 130 cgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctgcgagg 189
||||| ||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 1466 gcttgtacaccttggtgcccggcaccggctgccacagcgcgcggctcacgttctgcgccg 1407
Query: 190 tgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||||||| ||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 1406 tgtagtcgaactgcaccggcgggctcgccgggaagtcggcggtgaacacgccg 1354
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 141089
Score = 73.8 bits (37), Expect = 5e-011
Identities = 184/233 (78%)
Strand = Plus / Plus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 109544 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 109603
Query: 70 cctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgtacctga 129
|||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||| |||
Sbjct: 109604 tctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttga 109663
Query: 130 cgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctgcgagg 189
||||| ||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 109664 gcttgtacaccttggtgcccggcaccggctgccacagcgcgcggctcacgttctgcgccg 109723
Query: 190 tgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||||||| ||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 109724 tgtagtcgaactgcaccggcgggctcgccgggaagtcggcggtgaacacgccg 109776
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 73.8 bits (37), Expect = 5e-011
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 437228 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 437169
Query: 70 cctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgtacctga 129
|||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||| |||
Sbjct: 437168 tctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttga 437109
Query: 130 cgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctgcgagg 189
||||| ||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 437108 gcttgtacaccttggtgcccggcaccggctgccacagcgcgcggctcacgttctgcgccg 437049
Query: 190 tgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||||||| ||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 437048 tgtagtcgaactgcaccggcgggctcgccgggaagtcggcggtgaacacgccg 436996
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
complete sequence
Length = 27566993
Score = 73.8 bits (37), Expect = 5e-011
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 437228 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 437169
Query: 70 cctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgtacctga 129
|||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||| |||
Sbjct: 437168 tctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttga 437109
Query: 130 cgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctgcgagg 189
||||| ||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 437108 gcttgtacaccttggtgcccggcaccggctgccacagcgcgcggctcacgttctgcgccg 437049
Query: 190 tgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||||||| ||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 437048 tgtagtcgaactgcaccggcgggctcgccgggaagtcggcggtgaacacgccg 436996
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 73.8 bits (37), Expect = 5e-011
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 437228 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 437169
Query: 70 cctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgtacctga 129
|||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||| |||
Sbjct: 437168 tctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttga 437109
Query: 130 cgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctgcgagg 189
||||| ||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 437108 gcttgtacaccttggtgcccggcaccggctgccacagcgcgcggctcacgttctgcgccg 437049
Query: 190 tgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||||||| ||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 437048 tgtagtcgaactgcaccggcgggctcgccgggaagtcggcggtgaacacgccg 436996
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 164143
Score = 67.9 bits (34), Expect = 3e-009
Identities = 187/238 (78%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||| ||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||
Sbjct: 102841 gtcgaagttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggg 102782
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgta 124
||| | |||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||
Sbjct: 102781 gtggttctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgta 102722
Query: 125 cctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctg 184
| ||| ||||| ||||||| || ||||||||||||||||| ||||||||
Sbjct: 102721 cttgagcttgtacaccttggtgcccgccaccggctgccacagcgcgcggctcacgttctg 102662
Query: 185 cgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||| ||||||| ||| |||||| |||||||||||| ||||||||||||||
Sbjct: 102661 cgccgtgtagtcgaactgcaccggcgggttggccgggaagtcggcggtgaacacgccg 102604
>gb|AACV01022227.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022227, whole
genome shotgun sequence
Length = 20909
Score = 67.9 bits (34), Expect = 3e-009
Identities = 187/238 (78%)
Strand = Plus / Plus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||| ||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||
Sbjct: 9569 gtcgaagttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggg 9628
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgta 124
||| | |||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||
Sbjct: 9629 gtggttctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgta 9688
Query: 125 cctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctg 184
| ||| ||||| ||||||| || ||||||||||||||||| ||||||||
Sbjct: 9689 cttgagcttgtacaccttggtgcccgccaccggctgccacagcgcgcggctcacgttctg 9748
Query: 185 cgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||| ||||||| ||| |||||| |||||||||||| ||||||||||||||
Sbjct: 9749 cgccgtgtagtcgaactgcaccggcgggttggccgggaagtcggcggtgaacacgccg 9806
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094
genomic scaffold, whole genome shotgun sequence
Length = 4775249
Score = 67.9 bits (34), Expect = 3e-009
Identities = 187/238 (78%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||| ||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||
Sbjct: 78483 gtcgaagttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggg 78424
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgta 124
||| | |||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||
Sbjct: 78423 gtggttctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgta 78364
Query: 125 cctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctg 184
| ||| ||||| ||||||| || ||||||||||||||||| ||||||||
Sbjct: 78363 cttgagcttgtacaccttggtgcccgccaccggctgccacagcgcgcggctcacgttctg 78304
Query: 185 cgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||| ||||||| ||| |||||| |||||||||||| ||||||||||||||
Sbjct: 78303 cgccgtgtagtcgaactgcaccggcgggttggccgggaagtcggcggtgaacacgccg 78246
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome
shotgun sequence
Length = 22593549
Score = 67.9 bits (34), Expect = 3e-009
Identities = 187/238 (78%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||| ||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||
Sbjct: 380775 gtcgaagttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggg 380716
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgta 124
||| | |||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||
Sbjct: 380715 gtggttctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgta 380656
Query: 125 cctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctg 184
| ||| ||||| ||||||| || ||||||||||||||||| ||||||||
Sbjct: 380655 cttgagcttgtacaccttggtgcccgccaccggctgccacagcgcgcggctcacgttctg 380596
Query: 185 cgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||| ||||||| ||| |||||| |||||||||||| ||||||||||||||
Sbjct: 380595 cgccgtgtagtcgaactgcaccggcgggttggccgggaagtcggcggtgaacacgccg 380538
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
complete sequence
Length = 28386948
Score = 67.9 bits (34), Expect = 3e-009
Identities = 187/238 (78%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||| ||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||
Sbjct: 395523 gtcgaagttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggg 395464
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgta 124
||| | |||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||
Sbjct: 395463 gtggttctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgta 395404
Query: 125 cctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctg 184
| ||| ||||| ||||||| || ||||||||||||||||| ||||||||
Sbjct: 395403 cttgagcttgtacaccttggtgcccgccaccggctgccacagcgcgcggctcacgttctg 395344
Query: 185 cgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||| ||||||| ||| |||||| |||||||||||| ||||||||||||||
Sbjct: 395343 cgccgtgtagtcgaactgcaccggcgggttggccgggaagtcggcggtgaacacgccg 395286
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 89 cgtgtcctggaacacgatctgcaccacggcgccgtac 125
||||||||||||||| | || |||||||| |||||||
Sbjct: 27885395 cgtgtcctggaacaccacctccaccacggtgccgtac 27885431
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 67.9 bits (34), Expect = 3e-009
Identities = 187/238 (78%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||| ||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||
Sbjct: 395523 gtcgaagttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggg 395464
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctggaacacgatctgcaccacggcgccgta 124
||| | |||| ||||||||||| ||| |||||| ||| | |||||| ||| ||||||
Sbjct: 395463 gtggttctcgccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgta 395404
Query: 125 cctgacgcggtacaggcgggtgcccttgacgggctgccacagcgcgcgcgggacgttctg 184
| ||| ||||| ||||||| || ||||||||||||||||| ||||||||
Sbjct: 395403 cttgagcttgtacaccttggtgcccgccaccggctgccacagcgcgcggctcacgttctg 395344
Query: 185 cgaggtgaagtcgaagaacacgggcgggagcgccgggaagtcgtcggtgaacacgccg 242
|| ||| ||||||| ||| |||||| |||||||||||| ||||||||||||||
Sbjct: 395343 cgccgtgtagtcgaactgcaccggcgggttggccgggaagtcggcggtgaacacgccg 395286
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 89 cgtgtcctggaacacgatctgcaccacggcgccgtac 125
||||||||||||||| | || |||||||| |||||||
Sbjct: 27909383 cgtgtcctggaacaccacctccaccacggtgccgtac 27909419
>gb|AACV01023843.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023843, whole
genome shotgun sequence
Length = 31145
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 20488 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 20547
Query: 70 cctcggcggcgaagatg 86
|||| |||||||||||
Sbjct: 20548 tctcgccggcgaagatg 20564
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109
genomic scaffold, whole genome shotgun sequence
Length = 5753019
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 433103 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 433044
Query: 70 cctcggcggcgaagatg 86
|||| |||||||||||
Sbjct: 433043 tctcgccggcgaagatg 433027
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome
shotgun sequence
Length = 23730396
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 10 agttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggggtgct 69
||||||| |||||| ||| || | |||||||| ||||||||||| ||| |||||||| |
Sbjct: 433103 agttgcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggt 433044
Query: 70 cctcggcggcgaagatg 86
|||| |||||||||||
Sbjct: 433043 tctcgccggcgaagatg 433027
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
complete sequence
Length = 131860
Score = 50.1 bits (25), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||||||||| ||| | | |||||||||| ||||||||| | ||||| ||
Sbjct: 58006 gtcgtagttgccgaacccggtgccgacgacgtagaagtcgtagccgtgcaggtgcagcgg 58065
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctg 97
||| ||||||| ||| ||||| ||||||||
Sbjct: 58066 gtggctctcggcgccgaggatgctggtgtcctg 58098
>gb|AACV01012344.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012344, whole
genome shotgun sequence
Length = 34090
Score = 50.1 bits (25), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||||||||| ||| | | |||||||||| ||||||||| | ||||| ||
Sbjct: 32060 gtcgtagttgccgaacccggtgccgacgacgtagaagtcgtagccgtgcaggtgcagcgg 32001
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctg 97
||| ||||||| ||| ||||| ||||||||
Sbjct: 32000 gtggctctcggcgccgaggatgctggtgtcctg 31968
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 50.1 bits (25), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||||||||| ||| | | |||||||||| ||||||||| | ||||| ||
Sbjct: 910227 gtcgtagttgccgaacccggtgccgacgacgtagaagtcgtagccgtgcaggtgcagcgg 910286
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctg 97
||| ||||||| ||| ||||| ||||||||
Sbjct: 910287 gtggctctcggcgccgaggatgctggtgtcctg 910319
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 50.1 bits (25), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||||||||| ||| | | |||||||||| ||||||||| | ||||| ||
Sbjct: 4742014 gtcgtagttgccgaacccggtgccgacgacgtagaagtcgtagccgtgcaggtgcagcgg 4742073
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctg 97
||| ||||||| ||| ||||| ||||||||
Sbjct: 4742074 gtggctctcggcgccgaggatgctggtgtcctg 4742106
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 50.1 bits (25), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||||||||| ||| | | |||||||||| ||||||||| | ||||| ||
Sbjct: 22042327 gtcgtagttgccgaacccggtgccgacgacgtagaagtcgtagccgtgcaggtgcagcgg 22042386
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctg 97
||| ||||||| ||| ||||| ||||||||
Sbjct: 22042387 gtggctctcggcgccgaggatgctggtgtcctg 22042419
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 50.1 bits (25), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 5 gtcgtagttgccgaaccccgtggccagcacgtagaagtggtagccgtggatgtgcatggg 64
|||||||||||||||||| ||| | | |||||||||| ||||||||| | ||||| ||
Sbjct: 22356371 gtcgtagttgccgaacccggtgccgacgacgtagaagtcgtagccgtgcaggtgcagcgg 22356430
Query: 65 gtgctcctcggcggcgaagatgcccgtgtcctg 97
||| ||||||| ||| ||||| ||||||||
Sbjct: 22356431 gtggctctcggcgccgaggatgctggtgtcctg 22356463
>gb|AC138198.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0055L19, *** SEQUENCING IN PROGRESS ***, 5 ordered
pieces
Length = 77546
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 89 cgtgtcctggaacacgatctgcaccacggcgccgtac 125
||||||||||||||| | || |||||||| |||||||
Sbjct: 3666 cgtgtcctggaacaccacctccaccacggtgccgtac 3702
>gb|AACV01025928.1| Oryza sativa (japonica cultivar-group) Ctg025928, whole genome
shotgun sequence
Length = 11272
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 89 cgtgtcctggaacacgatctgcaccacggcgccgtac 125
||||||||||||||| | || |||||||| |||||||
Sbjct: 6292 cgtgtcctggaacaccacctccaccacggtgccgtac 6328
>gb|CH401364.1| Oryza sativa (japonica cultivar-group) scaffold000234 genomic
scaffold, whole genome shotgun sequence
Length = 21864
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 89 cgtgtcctggaacacgatctgcaccacggcgccgtac 125
||||||||||||||| | || |||||||| |||||||
Sbjct: 6292 cgtgtcctggaacaccacctccaccacggtgccgtac 6328
>gb|AC112658.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0005C17, *** SEQUENCING IN PROGRESS ***
Length = 130548
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 89 cgtgtcctggaacacgatctgcaccacggcgccgtac 125
||||||||||||||| | || |||||||| |||||||
Sbjct: 56970 cgtgtcctggaacaccacctccaccacggtgccgtac 57006
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 394,553
Number of Sequences: 438736
Number of extensions: 394553
Number of successful extensions: 9221
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8772
Number of HSP's gapped (non-prelim): 428
length of query: 352
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 332
effective length of database: 2,791,645,196
effective search space: 926826205072
effective search space used: 926826205072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)