BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germinati... 190 3e-046
dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA... 190 3e-046
dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA... 190 3e-046
dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA... 190 3e-046
gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 ... 190 3e-046
gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) c... 190 3e-046
ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 190 3e-046
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 190 3e-046
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 190 3e-046
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 190 3e-046
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 190 3e-046
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 190 3e-046
gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing t... 188 1e-045
dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA... 188 1e-045
dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA... 188 1e-045
dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA... 188 1e-045
dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA... 188 1e-045
dbj|AP004298.4| Oryza sativa (japonica cultivar-group) geno... 188 1e-045
dbj|AP005248.4| Oryza sativa (japonica cultivar-group) geno... 188 1e-045
gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) c... 188 1e-045
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 188 1e-045
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 188 1e-045
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 188 1e-045
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 188 1e-045
gb|D48053.1|D48053 RICS13983A Rice green shoot Oryza sativa... 186 4e-045
dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing... 176 4e-042
gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germinati... 168 1e-039
gb|CF323718.1|CF323718 HDN--04-J12.g1 OsHDAC1-overexpressin... 168 1e-039
dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chro... 168 1e-039
dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA... 168 1e-039
dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA... 168 1e-039
dbj|AP005824.4| Oryza sativa (japonica cultivar-group) geno... 168 1e-039
gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) c... 168 1e-039
ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA 168 1e-039
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 168 1e-039
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 168 1e-039
gb|AU068488.1|AU068488 AU068488 Rice callus Oryza sativa (j... 163 6e-038
gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing t... 161 2e-037
gb|D48612.2|D48612 RICS14935A Rice green shoot Oryza sativa... 143 6e-032
gb|CF311164.1|CF311164 ABF--06-E14.b1 ABF3-overexpressing t... 133 6e-029
gb|CA755226.1|CA755226 BR030016000_PLATE_A04_25_023.ab1 OA ... 103 5e-020
gb|CB671069.1|CB671069 OSJNEe04H10.r OSJNEe Oryza sativa (j... 80 7e-013
gb|CB675032.1|CB675032 OSJNEe10H13.r OSJNEe Oryza sativa (j... 80 7e-013
gb|CB677499.1|CB677499 OSJNEe14I04.r OSJNEe Oryza sativa (j... 80 7e-013
gb|AU082289.1|AU082289 AU082289 Rice callus Oryza sativa (j... 66 1e-008
gb|CB636280.1|CB636280 OSJNEa01J02.r OSJNEa Oryza sativa (j... 58 3e-006
gb|CB645002.1|CB645002 OSJNEb06H07.r OSJNEb Oryza sativa (j... 58 3e-006
dbj|AK061688.1| Oryza sativa (japonica cultivar-group) cDNA... 58 3e-006
dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA... 58 3e-006
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 58 3e-006
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 58 3e-006
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 58 3e-006
ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-006
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 58 3e-006
gb|CB670294.1|CB670294 OSJNEe03E21.r OSJNEe Oryza sativa (j... 56 1e-005
gb|AU032362.1|AU032362 AU032362 Rice root Oryza sativa (jap... 54 4e-005
gb|D24964.1|D24964 RICR2854A Rice root Oryza sativa (japoni... 54 4e-005
gb|AU082170.1|AU082170 AU082170 Rice green shoot Oryza sati... 50 6e-004
gb|CF277609.1|CF277609 14ETL--03-D13.b1 Rice etiolated leaf... 50 6e-004
dbj|AK062007.1| Oryza sativa (japonica cultivar-group) cDNA... 50 6e-004
dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA... 50 6e-004
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 50 6e-004
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 50 6e-004
gb|AACV01015403.1| Oryza sativa (japonica cultivar-group) c... 50 6e-004
ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA 50 6e-004
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 50 6e-004
gb|CB672250.1|CB672250 OSJNEe06D04.r OSJNEe Oryza sativa (j... 48 0.003
gb|CB671504.1|CB671504 OSJNEe05B24.r OSJNEe Oryza sativa (j... 44 0.040
>gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 125 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 184
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 185 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 244
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 245 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 304
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 305 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 364
Query: 249 ttctc 253
|||||
Sbjct: 365 ttctc 369
>dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H07, full
insert sequence
Length = 1180
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 271 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 330
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 331 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 390
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 391 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 450
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 451 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 510
Query: 249 ttctc 253
|||||
Sbjct: 511 ttctc 515
>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full
insert sequence
Length = 4029
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 3123 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 3182
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 3183 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 3242
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 3243 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 3302
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 3303 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 3362
Query: 249 ttctc 253
|||||
Sbjct: 3363 ttctc 3367
>dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029A22, full
insert sequence
Length = 2325
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 1748 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 1807
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 1808 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 1867
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 1868 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 1927
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 1928 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 1987
Query: 249 ttctc 253
|||||
Sbjct: 1988 ttctc 1992
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
sequence
Length = 171376
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Minus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 137004 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 136945
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 136944 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 136885
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 136884 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 136825
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 136824 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 136765
Query: 249 ttctc 253
|||||
Sbjct: 136764 ttctc 136760
>gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008229, whole
genome shotgun sequence
Length = 36790
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 7972 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 8031
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 8032 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 8091
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 8092 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 8151
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 8152 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 8211
Query: 249 ttctc 253
|||||
Sbjct: 8212 ttctc 8216
>ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3905
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 2953 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 3012
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 3013 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 3072
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 3073 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 3132
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 3133 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 3192
Query: 249 ttctc 253
|||||
Sbjct: 3193 ttctc 3197
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 180179 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 180238
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 180239 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 180298
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 180299 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 180358
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 180359 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 180418
Query: 249 ttctc 253
|||||
Sbjct: 180419 ttctc 180423
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 8599096 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 8599155
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 8599156 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 8599215
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 8599216 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 8599275
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 8599276 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 8599335
Query: 249 ttctc 253
|||||
Sbjct: 8599336 ttctc 8599340
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 7194355 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 7194306
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 35865259 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 35865318
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 35865319 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 35865378
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 35865379 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 35865438
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 35865439 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 35865498
Query: 249 ttctc 253
|||||
Sbjct: 35865499 ttctc 35865503
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 34460518 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 34460469
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 34968548 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 34968607
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 34968608 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 34968667
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 34968668 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 34968727
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 34968728 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 34968787
Query: 249 ttctc 253
|||||
Sbjct: 34968788 ttctc 34968792
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 33567591 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 33567542
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 190 bits (96), Expect = 3e-046
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 34878476 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 34878535
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 34878536 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 34878595
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||| |||||||||||||||||||||| | | |||||||| ||| | || |||||||||
Sbjct: 34878596 aagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggtt 34878655
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| |||||| || || ||| |||||||||||||||
Sbjct: 34878656 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 34878715
Query: 249 ttctc 253
|||||
Sbjct: 34878716 ttctc 34878720
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 33477081 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 33477032
>gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-G16, mRNA sequence
Length = 414
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 103 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 162
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 163 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 222
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 223 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 282
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 283 ttggttggaaggcaaaacaggacgccaacaatt 315
>dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H11, full
insert sequence
Length = 1827
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 905 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 964
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 965 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 1024
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 1025 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 1084
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 1085 ttggttggaaggcaaaacaggacgccaacaatt 1117
>dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F14, full
insert sequence
Length = 3221
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 2299 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 2358
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 2359 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 2418
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 2419 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 2478
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 2479 ttggttggaaggcaaaacaggacgccaacaatt 2511
>dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013085H01, full
insert sequence
Length = 1867
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 1010 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 1069
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1070 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 1129
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 1130 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 1189
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 1190 ttggttggaaggcaaaacaggacgccaacaatt 1222
>dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086F23, full
insert sequence
Length = 4127
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 3205 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 3264
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 3265 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 3324
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 3325 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 3384
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 3385 ttggttggaaggcaaaacaggacgccaacaatt 3417
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409D09
Length = 150485
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 39886 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 39827
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 39826 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 39767
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 39766 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 39707
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 39706 ttggttggaaggcaaaacaggacgccaacaatt 39674
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0084P08
Length = 158656
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 156513 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 156454
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 156453 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 156394
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 156393 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 156334
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 156333 ttggttggaaggcaaaacaggacgccaacaatt 156301
>gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015914, whole
genome shotgun sequence
Length = 29977
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 12466 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 12407
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 12406 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 12347
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 12346 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 12287
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 12286 ttggttggaaggcaaaacaggacgccaacaatt 12254
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 1469557 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 1469498
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1469497 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 1469438
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 1469437 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 1469378
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 1469377 ttggttggaaggcaaaacaggacgccaacaatt 1469345
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060 genomic
scaffold, whole genome shotgun sequence
Length = 1552265
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 1442285 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 1442226
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1442225 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 1442166
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 1442165 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 1442106
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 1442105 ttggttggaaggcaaaacaggacgccaacaatt 1442073
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 12875762 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 12875703
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 12875702 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 12875643
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 12875642 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 12875583
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 12875582 ttggttggaaggcaaaacaggacgccaacaatt 12875550
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 8447066 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 8447125
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 8447126 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 8447185
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 8447186 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 8447245
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 8447246 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 8447305
Query: 249 ttctca 254
||||||
Sbjct: 8447306 ttctca 8447311
Score = 50.1 bits (25), Expect = 6e-004
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|||||||||||||| || |||||||||| | | |||| |||||||||||
Sbjct: 5796694 aagctcttctttgccttctgggtgattgtccacttgtaccccttcctcaa 5796645
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 188 bits (95), Expect = 1e-045
Identities = 181/213 (84%)
Strand = Plus / Minus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 13688894 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 13688835
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 13688834 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 13688775
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || || ||||||||||||
Sbjct: 13688774 ttcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggt 13688715
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 13688714 ttggttggaaggcaaaacaggacgccaacaatt 13688682
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 8533069 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 8533128
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 8533129 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 8533188
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 8533189 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 8533248
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 8533249 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 8533308
Query: 249 ttctca 254
||||||
Sbjct: 8533309 ttctca 8533314
Score = 50.1 bits (25), Expect = 6e-004
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|||||||||||||| || |||||||||| | | |||| |||||||||||
Sbjct: 5885410 aagctcttctttgccttctgggtgattgtccacttgtaccccttcctcaa 5885361
>gb|D48053.1|D48053 RICS13983A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 467
Score = 186 bits (94), Expect = 4e-045
Identities = 180/212 (84%)
Strand = Plus / Plus
Query: 4 catttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcattg 63
|||| |||||||||||||| |||||||||| |||||| | ||| |||||||||||||||
Sbjct: 1 cattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcattg 60
Query: 64 gtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnt 123
| || || ||||||||||| |||||||||||||| || || || |||||||| |
Sbjct: 61 gggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctct 120
Query: 124 tcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtt 183
||||||||||||||||||||||||||||||| | | | || || || |||||||||||||
Sbjct: 121 tcgggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtt 180
Query: 184 tggttgggaggcaaaacaggacaccgacaatt 215
||||||| |||||||||||||| || ||||||
Sbjct: 181 tggttggaaggcaaaacaggacgccaacaatt 212
>dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D15, full
insert sequence
Length = 4208
Score = 180 bits (91), Expect = 3e-043
Identities = 180/213 (84%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 3287 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 3346
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 3347 ggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctc 3406
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||||||||||| | | | || || | ||||||||||||
Sbjct: 3407 ttcgggaagctcttctttgcattttgggtgatcgtccatctttaccaattcctcaaaggt 3466
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| |||||||||||||| || ||||||
Sbjct: 3467 ttggttggaaggcaaaacaggacgccaacaatt 3499
>gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-N01, mRNA sequence
Length = 505
Score = 176 bits (89), Expect = 4e-042
Identities = 203/246 (82%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctac-cactttgctcctattgaacttcattggtgt 67
|||||||| ||||| || ||||| ||||| |||||||||||||||||||||||| || ||
Sbjct: 125 aaatggacaaccttgttaataccccctactcactttgctcctattgaacttcatcggggt 184
Query: 68 ggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcgg 127
|| ||||| |||||||| ||||||||||| ||||| || |||||||| || ||
Sbjct: 185 agtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttgg 244
Query: 128 gaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggt 187
|||||| |||||||||||||||||||||| | | |||||||| ||| | || ||||||||
Sbjct: 245 gaagctgttctttgcattttgggtgattgtccatctgtatccgttcttgaagggtttggt 304
Query: 188 tgggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaat 247
||| ||||||||||||||||| |||||| || || ||| ||||||||||||||
Sbjct: 305 tggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaat 364
Query: 248 cttctc 253
||||||
Sbjct: 365 cttctc 370
>gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 655
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 196 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 255
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 256 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 315
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 316 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 375
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 376 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 435
Query: 249 ttctca 254
||||||
Sbjct: 436 ttctca 441
>gb|CF323718.1|CF323718 HDN--04-J12.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-J12, mRNA sequence
Length = 531
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 73 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 132
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 133 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 192
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 193 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 252
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 253 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 312
Query: 249 ttctca 254
||||||
Sbjct: 313 ttctca 318
>dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1134_A07,
*** SEQUENCING IN PROGRESS ***
Length = 146543
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 82078 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 82137
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 82138 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 82197
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 82198 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 82257
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 82258 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 82317
Query: 249 ttctca 254
||||||
Sbjct: 82318 ttctca 82323
>dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C05, full
insert sequence
Length = 1335
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 355 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 414
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 415 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 474
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 475 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 534
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 535 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 594
Query: 249 ttctca 254
||||||
Sbjct: 595 ttctca 600
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full
insert sequence
Length = 3746
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 3018 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 3077
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 3078 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 3137
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 3138 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 3197
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 3198 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 3257
Query: 249 ttctca 254
||||||
Sbjct: 3258 ttctca 3263
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0669H03
Length = 167878
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 65537 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 65596
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 65597 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 65656
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 65657 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 65716
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 65717 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 65776
Query: 249 ttctca 254
||||||
Sbjct: 65777 ttctca 65782
>gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015596, whole
genome shotgun sequence
Length = 13414
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Minus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 4804 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 4745
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 4744 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 4685
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 4684 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 4625
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 4624 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 4565
Query: 249 ttctca 254
||||||
Sbjct: 4564 ttctca 4559
>ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3746
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 3018 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 3077
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 3078 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 3137
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 3138 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 3197
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 3198 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 3257
Query: 249 ttctca 254
||||||
Sbjct: 3258 ttctca 3263
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 8489141 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 8489200
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 8489201 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 8489260
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 8489261 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 8489320
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 8489321 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 8489380
Query: 249 ttctca 254
||||||
Sbjct: 8489381 ttctca 8489386
Score = 50.1 bits (25), Expect = 6e-004
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
|||||||||||||| || |||||||||| | | |||| |||||||||||
Sbjct: 5841482 aagctcttctttgccttctgggtgattgtccacttgtaccccttcctcaa 5841433
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 168 bits (85), Expect = 1e-039
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 2393441 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 2393500
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 2393501 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 2393560
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 2393561 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 2393620
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
|| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 2393621 ggaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 2393680
Query: 249 ttctca 254
||||||
Sbjct: 2393681 ttctca 2393686
>gb|AU068488.1|AU068488 AU068488 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30355_4A, mRNA sequence
Length = 270
Score = 163 bits (82), Expect = 6e-038
Identities = 168/200 (84%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 38 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 97
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 98 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 157
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 158 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 217
Query: 189 gggaggcaaaacaggacacc 208
|| |||||||||||||||||
Sbjct: 218 ggaaggcaaaacaggacacc 237
>gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-M03, mRNA sequence
Length = 635
Score = 161 bits (81), Expect = 2e-037
Identities = 200/246 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||||| ||||||||||| || || |||| || |||||||||||||| ||
Sbjct: 358 aaatggaccaccttgttgatacctccaactacactgctgctgttgaacttcattggggtt 417
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnnttcggg 128
|| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||
Sbjct: 418 gtagctggagtttctaatgctatcaacaatggatatgaatcatggggacctctgttcggg 477
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
||||||||||||||||| |||||||||| | | || ||||| |||||||| |||||||||
Sbjct: 478 aagctcttctttgcattctgggtgattgtccatctatatccgttcctcaagggtttggtt 537
Query: 189 gggaggcaaaacaggacaccgacaattnnnatcnnntgnnncatcctgctggcttcaatc 248
| ||||||||||||||||| || ||| ||| || ||| || ||||||||||||
Sbjct: 538 tgaaggcaaaacaggacaccaacgattgttatcgtctggtccattctactggcttcaatc 597
Query: 249 ttctca 254
||||||
Sbjct: 598 ttctca 603
>gb|D48612.2|D48612 RICS14935A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 270
Score = 143 bits (72), Expect = 6e-032
Identities = 146/174 (83%)
Strand = Plus / Plus
Query: 28 tacctcctaccactttgctcctattgaacttcattggtgtggtcgctggtgtttccaatg 87
||||||| |||||| | ||| |||||||||||||||| || || ||||||||||| ||||
Sbjct: 28 tacctccaaccactctactcttattgaacttcattggggttgttgctggtgtttcgaatg 87
Query: 88 caatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgcatttt 147
|||||||||| || || || |||||||| |||||||||||||||||||||||||
Sbjct: 88 caatcaataacgggtatgaatcatggggacccctcttcgggaagctcttctttgcatttt 147
Query: 148 gggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaaca 201
||||||| | | | || || || |||||||||||||||||| ||||| ||||||
Sbjct: 148 gggtgatcgtccatctttacccattcctcaaaggtttggtttggagggaaaaca 201
>gb|CF311164.1|CF311164 ABF--06-E14.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-E14, mRNA sequence
Length = 363
Score = 133 bits (67), Expect = 6e-029
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||||||||| |||||||||| |||||| | ||| ||||||||||||||
Sbjct: 103 acattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcatt 162
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
| || || ||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 163 gcggttgttgctggtgtttcaaatgcaatcaataacgggtatgaatcatggggacccctc 222
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||||||| ||||||| | | | || || || || ||||||||
Sbjct: 223 ttcgggaagctcttctttgcatttcgggtgatcgaccatctctacccaatcatcaaaggt 282
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
|||||||| | || |||||||| || ||||||
Sbjct: 283 ttggttggaacgcccaacaggacgccaacaatt 315
>gb|CA755226.1|CA755226 BR030016000_PLATE_A04_25_023.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030016000_PLATE_A04_25_023.ab1 similar to (AF200530)
cellulose synthase-6 [Zea mays], mRNA sequence
Length = 817
Score = 103 bits (52), Expect = 5e-020
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 127 ggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttgg 186
|||||||||||||||||||||||||||| | | | || || || ||||||||||||||||
Sbjct: 1 ggaagctcttctttgcattttgggtgatcgtccatctttacccattcctcaaaggtttgg 60
Query: 187 ttgggaggcaaaacaggacaccgacaatt 215
|||| |||||||||||||| || ||||||
Sbjct: 61 ttggaaggcaaaacaggacgccaacaatt 89
>gb|CB671069.1|CB671069 OSJNEe04H10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04H10 3', mRNA sequence
Length = 765
Score = 79.8 bits (40), Expect = 7e-013
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 139 ttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaa 198
|||||||||||||||| | | | || || || |||||||||||||||||||| |||||||
Sbjct: 765 ttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaaggcaaa 706
Query: 199 acaggacaccgacaatt 215
||||||| || ||||||
Sbjct: 705 acaggacgccaacaatt 689
>gb|CB675032.1|CB675032 OSJNEe10H13.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10H13 3', mRNA sequence
Length = 764
Score = 79.8 bits (40), Expect = 7e-013
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 139 ttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaa 198
|||||||||||||||| | | | || || || |||||||||||||||||||| |||||||
Sbjct: 764 ttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaaggcaaa 705
Query: 199 acaggacaccgacaatt 215
||||||| || ||||||
Sbjct: 704 acaggacgccaacaatt 688
>gb|CB677499.1|CB677499 OSJNEe14I04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14I04 3', mRNA sequence
Length = 781
Score = 79.8 bits (40), Expect = 7e-013
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 139 ttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaa 198
|||||||||||||||| | | | || || || |||||||||||||||||||| |||||||
Sbjct: 781 ttgcattttgggtgatcgtccatctttacccattcctcaaaggtttggttggaaggcaaa 722
Query: 199 acaggacaccgacaatt 215
||||||| || ||||||
Sbjct: 721 acaggacgccaacaatt 705
>gb|AU082289.1|AU082289 AU082289 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12805, mRNA sequence
Length = 711
Score = 65.9 bits (33), Expect = 1e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaatt 215
|||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 4 ttcctcaaaggtttggttggaaggcaaaacaggacgccaacaatt 48
>gb|CB636280.1|CB636280 OSJNEa01J02.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa01J02 3', mRNA sequence
Length = 611
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 476 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 427
>gb|CB645002.1|CB645002 OSJNEb06H07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06H07 3', mRNA sequence
Length = 805
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 175 tcaaaggtttggttgggaggcaaaacaggacaccgacaatt 215
|||||||||||||||| |||||||||||||| || ||||||
Sbjct: 805 tcaaaggtttggttggaaggcaaaacaggacgccaacaatt 765
>dbj|AK061688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B05, full
insert sequence
Length = 1582
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 955 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 1004
>dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full
insert sequence
Length = 4282
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcct 175
||||||||||||||||| || |||||||||| | | ||||| ||||||||
Sbjct: 3290 gggaagctcttctttgccttctgggtgattgtccacctgtaccccttcct 3339
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 305,768
Number of Sequences: 438736
Number of extensions: 305768
Number of successful extensions: 4796
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4530
Number of HSP's gapped (non-prelim): 208
length of query: 290
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 270
effective length of database: 2,791,645,196
effective search space: 753744202920
effective search space used: 753744202920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)