BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB681121.1|CB681121 OSJNEf06P20.f OSJNEf Oryza sativa (j... 145 2e-032
gb|CF292804.1|CF292804 30DGS--01-M06.b1 Rice leaf plasmid c... 145 2e-032
gb|CF309246.1|CF309246 ABF--03-F21.b1 ABF3-overexpressing t... 145 2e-032
gb|CF314144.1|CF314144 HD--02-I24.g1 OsHDAC1-overexpressing... 145 2e-032
gb|CF315219.1|CF315219 HD--04-A23.b1 OsHDAC1-overexpressing... 145 2e-032
dbj|AB087745.1| Oryza sativa (japonica cultivar-group) OsUG... 145 2e-032
ref|XM_476032.1| Oryza sativa (japonica cultivar-group), p... 145 2e-032
dbj|AK066249.1| Oryza sativa (japonica cultivar-group) cDNA... 135 2e-029
gb|AACV01012825.1| Oryza sativa (japonica cultivar-group) c... 135 2e-029
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 135 2e-029
gb|AC136217.4| Oryza sativa (japonica cultivar-group) chrom... 135 2e-029
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 135 2e-029
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 135 2e-029
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 135 2e-029
gb|CB658457.1|CB658457 OSJNEc14I03.f OSJNEc Oryza sativa (j... 127 4e-027
gb|CF307798.1|CF307798 ABF--01-F19.b1 ABF3-overexpressing t... 115 1e-023
gb|CB681122.1|CB681122 OSJNEf06P20.r OSJNEf Oryza sativa (j... 92 2e-016
gb|CF313350.1|CF313350 HD--01-H06.b1 OsHDAC1-overexpressing... 76 1e-011
dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA... 56 1e-005
dbj|AP005879.3| Oryza sativa (japonica cultivar-group) geno... 56 1e-005
gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) c... 56 1e-005
ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-005
ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-005
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 56 1e-005
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 56 1e-005
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 56 1e-005
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 56 1e-005
gb|CF321935.1|CF321935 HD--13-F17.g1 OsHDAC1-overexpressing... 52 2e-004
gb|C19700.1|C19700 C19700 Rice panicle at ripening stage Or... 48 0.003
gb|CB665375.1|CB665375 OSJNEd11L17.f OSJNEd Oryza sativa (j... 48 0.003
gb|CB665376.1|CB665376 OSJNEd11L17.r OSJNEd Oryza sativa (j... 48 0.003
dbj|AK073610.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK104977.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AP005681.3| Oryza sativa (japonica cultivar-group) geno... 48 0.003
gb|AACV01020430.1| Oryza sativa (japonica cultivar-group) c... 48 0.003
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 48 0.003
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (j... 44 0.043
gb|CB658458.1|CB658458 OSJNEc14I03.r OSJNEc Oryza sativa (j... 44 0.043
gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (j... 44 0.043
dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chro... 44 0.043
dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUG... 44 0.043
dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.043
dbj|AP004397.3| Oryza sativa (japonica cultivar-group) geno... 44 0.043
gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) c... 44 0.043
ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.043
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.043
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.043
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.043
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.043
>gb|CB681121.1|CB681121 OSJNEf06P20.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06P20 5', mRNA sequence
Length = 751
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 627 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 568
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 567 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 508
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 507 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 448
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 447 tatcggagcagtatgatcttccagt 423
>gb|CF292804.1|CF292804 30DGS--01-M06.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-M06, mRNA sequence
Length = 544
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 300 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 241
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 240 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 181
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 180 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 121
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 120 tatcggagcagtatgatcttccagt 96
>gb|CF309246.1|CF309246 ABF--03-F21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-F21, mRNA sequence
Length = 594
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 344 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 285
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 284 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 225
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 224 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 165
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 164 tatcggagcagtatgatcttccagt 140
>gb|CF314144.1|CF314144 HD--02-I24.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--02-I24, mRNA sequence
Length = 645
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 345 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 404
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 405 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 464
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 465 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 524
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 525 tatcggagcagtatgatcttccagt 549
>gb|CF315219.1|CF315219 HD--04-A23.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--04-A23, mRNA sequence
Length = 649
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 481 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 422
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 421 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 362
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 361 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 302
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 301 tatcggagcagtatgatcttccagt 277
>dbj|AB087745.1| Oryza sativa (japonica cultivar-group) OsUGE-1 mRNA for UDP-glucose
4-epimerase, complete cds
Length = 1346
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 820 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 761
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 760 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 701
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 700 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 641
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 640 tatcggagcagtatgatcttccagt 616
>ref|XM_476032.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1065
Score = 145 bits (73), Expect = 2e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 734 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 675
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 674 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 615
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 614 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 555
Query: 183 tacctgagcagtatgatcttccagt 207
|| | ||||||||||||||||||||
Sbjct: 554 tatcggagcagtatgatcttccagt 530
>dbj|AK066249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051I17, full
insert sequence
Length = 3495
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 2728 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 2669
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 2668 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 2609
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 2608 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 2549
Query: 204 cagt 207
||||
Sbjct: 2548 cagt 2545
>gb|AACV01012825.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012825, whole
genome shotgun sequence
Length = 24986
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Plus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 18468 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 18527
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 18528 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 18587
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 18588 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 18647
Query: 204 cagt 207
||||
Sbjct: 18648 cagt 18651
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 1049306 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 1049247
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 1049246 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 1049187
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 1049186 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 1049127
Query: 204 cagt 207
||||
Sbjct: 1049126 cagt 1049123
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0030I14, complete sequence
Length = 159035
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 62407 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 62348
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 62347 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 62288
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 62287 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 62228
Query: 204 cagt 207
||||
Sbjct: 62227 cagt 62224
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 11830065 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 11830006
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 11830005 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 11829946
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 11829945 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 11829886
Query: 204 cagt 207
||||
Sbjct: 11829885 cagt 11829882
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 29130378 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 29130319
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 29130318 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 29130259
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 29130258 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 29130199
Query: 204 cagt 207
||||
Sbjct: 29130198 cagt 29130195
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 135 bits (68), Expect = 2e-029
Identities = 155/184 (84%)
Strand = Plus / Minus
Query: 24 accccagtcccatccttggtgctgtagtccgtcccgtagaccgtgaggtgaggtaacctc 83
|||||||| |||||||||||| ||||||| || || ||||| || ||| || |||
Sbjct: 29414382 accccagttccatccttggtgttgtagtcggttccatagacggtaagggccggcctcctg 29414323
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 29414322 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 29414263
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 29414262 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 29414203
Query: 204 cagt 207
||||
Sbjct: 29414202 cagt 29414199
>gb|CB658457.1|CB658457 OSJNEc14I03.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I03 5', mRNA sequence
Length = 795
Score = 127 bits (64), Expect = 4e-027
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
||||||||||| ||||| ||| ||||||| |||||||| |||| ||||||||||| ||
Sbjct: 761 ccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcaggggtcctca 702
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| |||||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct: 701 ccaatgtacccgcttgggtgagctccaacagggttgaagtatcggagcagtatgatcttc 642
Query: 204 cagt 207
||||
Sbjct: 641 cagt 638
>gb|CF307798.1|CF307798 ABF--01-F19.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-F19, mRNA sequence
Length = 448
Score = 115 bits (58), Expect = 1e-023
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 196 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 137
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||| | ||| ||||||| ||||||||
Sbjct: 136 acggtaagggccggcctcctgccaacagcgacctgccggacgaagggcatgaggttgttt 77
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaag 182
|||| ||||||||||| || || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 76 gggatgccgcaggggtcctcaccaatgtacccgcttgggtgagctccaacagggttgaag 17
Query: 183 tacctgagcagtat 196
|| | |||||||||
Sbjct: 16 tatcggagcagtat 3
>gb|CB681122.1|CB681122 OSJNEf06P20.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06P20 3', mRNA sequence
Length = 841
Score = 91.7 bits (46), Expect = 2e-016
Identities = 130/158 (82%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtccgtcccgtag 62
||||| ||||| || ||||| |||||||| |||||||||||| ||||||| || || |||
Sbjct: 683 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtcggttccatag 742
Query: 63 accgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgttc 122
|| || ||| || ||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 743 acggtaagggccggcctcctgccaacagcgacctgctggacgaagggcatgaggttgttt 802
Query: 123 gggacaccgcaggggtcttcgccgatgtacccgcttgg 160
|||| ||||||||||| || || ||||||||||||||
Sbjct: 803 gggatgccgcaggggtcctcaccaatgtacccgcttgg 840
>gb|CF313350.1|CF313350 HD--01-H06.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--01-H06, mRNA sequence
Length = 710
Score = 75.8 bits (38), Expect = 1e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 134 ggggtcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcag 193
|||||| || || |||||||||||||| ||||| ||||| ||||| ||||| | ||||||
Sbjct: 710 ggggtcctcaccaatgtacccgcttgggtgagctccaacagggttcaagtatcggagcag 651
Query: 194 tatgatcttccagt 207
||||||||||||||
Sbjct: 650 tatgatcttccagt 637
>dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L03, full
insert sequence
Length = 1419
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 775 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 716
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 715 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 668
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0024J13
Length = 127614
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 70356 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 70415
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 70416 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 70463
>gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019597, whole
genome shotgun sequence
Length = 35375
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 25435 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 25376
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 25375 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 25328
>ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1419
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 775 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 716
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 715 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 668
>ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1110
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 690 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 631
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 630 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 583
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 198943 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 199002
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 199003 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 199050
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078 genomic
scaffold, whole genome shotgun sequence
Length = 4067473
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 2868117 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 2868176
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 2868177 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 2868224
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 8274355 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 8274414
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 8274415 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 8274462
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 19261656 tgagcgccgatggggttgaagtacctgagcag 19261687
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 80 cctcccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtc 139
|||||| ||||| |||||||| ||| ||||||| |||||||| || | || || |||||
Sbjct: 9386942 cctcccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtc 9387001
Query: 140 ttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacct 187
||| || | ||| || || |||||||| ||||| || |||||||||||
Sbjct: 9387002 ttcaccaaggtatccactgggatgagctccaacaggattgaagtacct 9387049
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 20300371 tgagcgccgatggggttgaagtacctgagcag 20300402
>gb|CF321935.1|CF321935 HD--13-F17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--13-F17, mRNA sequence
Length = 564
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtgctgtagtc 52
||||| ||||| || ||||| |||||||| |||||||||||| |||||||
Sbjct: 467 acaacatggatatagtcacgaaccccagttccatccttggtgttgtagtc 516
>gb|C19700.1|C19700 C19700 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10795_1A, mRNA sequence
Length = 353
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 190 tgagcgccgatggggttgaagtacctgagcag 159
>gb|CB665375.1|CB665375 OSJNEd11L17.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L17 5', mRNA sequence
Length = 758
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 500 tgagcgccgatggggttgaagtacctgagcag 469
>gb|CB665376.1|CB665376 OSJNEd11L17.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L17 3', mRNA sequence
Length = 764
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 694 tgagcgccgatggggttgaagtacctgagcag 725
>dbj|AK073610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033049I18, full
insert sequence
Length = 1425
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 732 tgagcgccgatggggttgaagtacctgagcag 701
>dbj|AK104977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A06, full
insert sequence
Length = 1375
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 676 tgagcgccgatggggttgaagtacctgagcag 645
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1439_F07
Length = 153743
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 79498 tgagcgccgatggggttgaagtacctgagcag 79529
>gb|AACV01020430.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020430, whole
genome shotgun sequence
Length = 49906
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 40345 tgagcgccgatggggttgaagtacctgagcag 40314
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 193871 tgagcgccgatggggttgaagtacctgagcag 193902
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 162 tgagcgccaacggggttgaagtacctgagcag 193
|||||||| | |||||||||||||||||||||
Sbjct: 9787845 tgagcgccgatggggttgaagtacctgagcag 9787876
>gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249_2A, mRNA sequence
Length = 312
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 258 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 199
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 198 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 139
Query: 204 ca 205
||
Sbjct: 138 ca 137
>gb|CB658458.1|CB658458 OSJNEc14I03.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I03 3', mRNA sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.043
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatccttggtg 44
||||| ||||| || ||||| |||||||| ||||||||||||
Sbjct: 687 acaacatggatatagtcacgaaccccagttccatccttggtg 728
>gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 5', mRNA sequence
Length = 884
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 274 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 215
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 214 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 155
Query: 204 ca 205
||
Sbjct: 154 ca 153
>dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0508B09, ***
SEQUENCING IN PROGRESS ***
Length = 144557
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 121489 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 121548
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 121549 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 121608
Query: 204 ca 205
||
Sbjct: 121609 ca 121610
>dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUGE-2 mRNA for putative
UDP-glucose 4-epimerase, complete cds
Length = 1736
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 893 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 834
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 833 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 774
Query: 204 ca 205
||
Sbjct: 773 ca 772
>dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059D16, full
insert sequence
Length = 1878
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 918 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 859
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 858 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 799
Query: 204 ca 205
||
Sbjct: 798 ca 797
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0436B06
Length = 148947
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 41942 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 42001
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 42002 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 42061
Query: 204 ca 205
||
Sbjct: 42062 ca 42063
>gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018313, whole
genome shotgun sequence
Length = 27159
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 15187 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 15246
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 15247 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 15306
Query: 204 ca 205
||
Sbjct: 15307 ca 15308
>ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1878
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 918 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 859
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 858 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 799
Query: 204 ca 205
||
Sbjct: 798 ca 797
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 17327205 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 17327264
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 17327265 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 17327324
Query: 204 ca 205
||
Sbjct: 17327325 ca 17327326
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 8794217 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 8794276
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 8794277 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 8794336
Query: 204 ca 205
||
Sbjct: 8794337 ca 8794338
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 16396223 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 16396282
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 16396283 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 16396342
Query: 204 ca 205
||
Sbjct: 16396343 ca 16396344
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 44.1 bits (22), Expect = 0.043
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgttcgggacaccgcaggggtcttcg 143
|||||||| |||||||| || || ||||| || ||||| || | || || || |||||
Sbjct: 17565292 ccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatggatcttcc 17565351
Query: 144 ccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatgatcttc 203
|| | ||| ||||| |||||||| ||||| || ||||||||||| || || || ||||||
Sbjct: 17565352 ccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaataatcttc 17565411
Query: 204 ca 205
||
Sbjct: 17565412 ca 17565413
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 246,728
Number of Sequences: 438736
Number of extensions: 246728
Number of successful extensions: 4257
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4096
Number of HSP's gapped (non-prelim): 161
length of query: 308
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 288
effective length of database: 2,791,645,196
effective search space: 803993816448
effective search space used: 803993816448
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)