BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF277571.1|CF277571 14ETL--03-C17.g1 Rice etiolated leaf... 266 2e-068
dbj|AK059848.1| Oryza sativa (japonica cultivar-group) cDNA... 266 2e-068
ref|XM_462727.2| Oryza sativa (japonica cultivar-group), mRNA 266 2e-068
gb|CA758756.1|CA758756 BR030003000_PLATE_H03_24_030.ab1 OA ... 212 2e-052
gb|CF325845.1|CF325845 JMT1--04-F24.g1 AtJMT-overexpressing... 196 1e-047
gb|AU174613.1|AU174613 AU174613 Rice cDNA from leaf Oryza s... 147 1e-032
dbj|AK102848.1| Oryza sativa (japonica cultivar-group) cDNA... 141 7e-031
gb|CF277872.1|CF277872 14ETL--03-J04.b1 Rice etiolated leaf... 137 1e-029
dbj|AP002969.2| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
dbj|AP002818.2| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
gb|AACV01000007.1| Oryza sativa (japonica cultivar-group) c... 135 5e-029
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 135 5e-029
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
gb|CV729912.1|CV729912 FLO--03-D03.b1 Rice flower lambda ph... 107 1e-020
gb|BP184401.1|BP184401 BP184401 pNS rice panicle cDNA, germ... 107 1e-020
gb|AACV01000009.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
gb|CF327536.1|CF327536 NACL--02-B02.b1 Rice callus plasmid ... 68 9e-009
ref|NT_107238.1| Oryza sativa (japonica cultivar-group) 66 4e-008
dbj|AP004730.2| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP003684.3| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|AACV01014167.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|AACV01000332.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
dbj|AP002816.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|AP002836.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|CF280665.1|CF280665 14ETL--07-G21.b1 Rice etiolated leaf... 44 0.13
gb|BP184402.1|BP184402 BP184402 pNS rice panicle cDNA, germ... 44 0.13
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 44 0.13
dbj|AP005862.2| Oryza sativa (japonica cultivar-group) geno... 44 0.13
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
>gb|CF277571.1|CF277571 14ETL--03-C17.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-C17, mRNA sequence
Length = 603
Score = 266 bits (134), Expect = 2e-068
Identities = 450/553 (81%), Gaps = 3/553 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 51 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 110
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 111 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 170
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 171 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 230
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 231 gccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaatttc 290
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 291 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 350
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 351 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 410
Query: 472 gaaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccac 531
||||||||||| ||||| ||||||||||| || || ||||| | ||||||| ||||||
Sbjct: 411 gaaggccctgcttcactccttgctgtctatgccatcgcatcgggcaagtcctacagccat 470
Query: 532 attctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcacc 591
|| ||||||||| | |||||||| || |||||||| ||||||||||| ||||| || ||
Sbjct: 471 atcctccagttcactgtctgtcttggtcagctctatggatgcctggtgtactttattaca 530
Query: 592 gcgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcatt 651
|| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 531 gcctacttggatggcttcaacttctggactagcccgttctacttctgggcttatttcatt 590
Query: 652 ggcgcaaacagct 664
|| ||||||||||
Sbjct: 591 ggtgcaaacagct 603
>dbj|AK059848.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F06, full
insert sequence
Length = 957
Score = 266 bits (134), Expect = 2e-068
Identities = 450/553 (81%), Gaps = 3/553 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 50 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 109
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 110 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 169
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 170 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 229
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 230 gccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaatttc 289
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 290 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 349
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 350 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 409
Query: 472 gaaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccac 531
||||||||||| ||||| ||||||||||| || || ||||| | ||||||| ||||||
Sbjct: 410 gaaggccctgcttcactccttgctgtctatgccatcgcatcgggcaagtcctacagccat 469
Query: 532 attctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcacc 591
|| ||||||||| | |||||||| || |||||||| ||||||||||| ||||| || ||
Sbjct: 470 atcctccagttcactgtctgtcttggtcagctctatggatgcctggtgtactttattaca 529
Query: 592 gcgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcatt 651
|| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 530 gcctacttggatggcttcaacttctggactagcccgttctacttctgggcttatttcatt 589
Query: 652 ggcgcaaacagct 664
|| ||||||||||
Sbjct: 590 ggtgcaaacagct 602
>ref|XM_462727.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 957
Score = 266 bits (134), Expect = 2e-068
Identities = 450/553 (81%), Gaps = 3/553 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 50 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 109
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 110 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 169
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 170 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 229
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 230 gccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaatttc 289
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 290 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 349
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 350 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 409
Query: 472 gaaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccac 531
||||||||||| ||||| ||||||||||| || || ||||| | ||||||| ||||||
Sbjct: 410 gaaggccctgcttcactccttgctgtctatgccatcgcatcgggcaagtcctacagccat 469
Query: 532 attctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcacc 591
|| ||||||||| | |||||||| || |||||||| ||||||||||| ||||| || ||
Sbjct: 470 atcctccagttcactgtctgtcttggtcagctctatggatgcctggtgtactttattaca 529
Query: 592 gcgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgtatttcatt 651
|| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 530 gcctacttggatggcttcaacttctggactagcccgttctacttctgggcttatttcatt 589
Query: 652 ggcgcaaacagct 664
|| ||||||||||
Sbjct: 590 ggtgcaaacagct 602
>gb|CA758756.1|CA758756 BR030003000_PLATE_H03_24_030.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030003000_PLATE_H03_24_030.ab1 similar to Probable
3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
(Cholestenol delta-isomerase) (Delta8-delta7 sterol
isomerase) (D8-D7 sterol isomerase)
gi|10697192|dbj|BAB16323...., mRNA sequence
Length = 627
Score = 212 bits (107), Expect = 2e-052
Identities = 447/554 (80%), Gaps = 6/554 (1%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 31 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 90
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 91 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 150
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||| ||||
Sbjct: 151 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctagtgg 210
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 211 gccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaatttc 270
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 271 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 330
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 331 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 390
Query: 472 gaaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagccac 531
||||||||||| ||||| ||||||||||| || || ||||| | ||||||| ||||||
Sbjct: 391 gaaggccctgcttcactccttgctgtctatgccatcgcatcgggcaagtcctacagccat 450
Query: 532 attctccagttcgccgtctgtctgggccagctctacggatgcctggtttacttcatcacc 591
|| ||||||||| | ||||| || || |||||||| ||||||||||| ||||| || ||
Sbjct: 451 atcctccagttcactgtctggcttggtcagctctatggatgcctggtgtactttataaca 510
Query: 592 gcgtacttgga-cggcttcaacttctgggtcggcccgttctacttctgggcgtatttcat 650
|| |||||||| |||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct: 511 gcctacttggattggcttc-acttctggactagcccgttctacttctgggc-tatttcat 568
Query: 651 tggcgcaaacagct 664
||| ||||||||||
Sbjct: 569 tggtgcaaacagct 582
>gb|CF325845.1|CF325845 JMT1--04-F24.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-F24, mRNA sequence
Length = 589
Score = 196 bits (99), Expect = 1e-047
Identities = 234/279 (83%)
Strand = Plus / Plus
Query: 386 tttggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgtta 445
||||||||||||| ||||| || ||||| || ||||| | || ||| |||| |||||||
Sbjct: 157 tttggaaagagtacagtaaaggtgactccagatatgtctccagagaccctgctactgtta 216
Query: 446 cggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtctacgcta 505
| || ||||| || || ||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct: 217 cagttgaaggaattacagctgtcttggaaggccctgcttcactccttgctgtctatgcca 276
Query: 506 ttgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctct 565
| ||||| | ||||||| |||||| || ||||||||| | |||||||| || |||||||
Sbjct: 277 tcgcatcgggcaagtcctacagccatatcctccagttcactgtctgtcttggtcagctct 336
Query: 566 acggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcc 625
| ||||||||||| ||||| || || || |||||||| ||||||||||||||| |||
Sbjct: 337 atggatgcctggtgtactttattacagcctacttggatggcttcaacttctggactagcc 396
Query: 626 cgttctacttctgggcgtatttcattggcgcaaacagct 664
|||||||||||||||| ||||||||||| ||||||||||
Sbjct: 397 cgttctacttctgggcttatttcattggtgcaaacagct 435
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 47 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 106
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 107 ctttgctcctaatttcttc 125
>gb|AU174613.1|AU174613 AU174613 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10117, mRNA sequence
Length = 486
Score = 147 bits (74), Expect = 1e-032
Identities = 312/389 (80%), Gaps = 3/389 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 85 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 144
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 145 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 204
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 205 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 264
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 265 gccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaatttc 324
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 325 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 384
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 385 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 444
Query: 472 gaaggccctgcatcactacttgctgtcta 500
||||||||||| ||||| |||||||||||
Sbjct: 445 gaaggccctgcttcactccttgctgtcta 473
>dbj|AK102848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110C04, full
insert sequence
Length = 3341
Score = 141 bits (71), Expect = 7e-031
Identities = 309/386 (80%), Gaps = 3/386 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 693 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 752
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 753 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 812
Query: 235 gtctccggaagatg-tgtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 813 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 872
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 873 gccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaatttc 932
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 933 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 992
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 993 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 1052
Query: 472 gaaggccctgcatcactacttgctgt 497
||||||||||| ||||| ||||||||
Sbjct: 1053 gaaggccctgcttcactccttgctgt 1078
>gb|CF277872.1|CF277872 14ETL--03-J04.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--03-J04, mRNA sequence
Length = 570
Score = 137 bits (69), Expect = 1e-029
Identities = 335/420 (79%), Gaps = 4/420 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 145 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 204
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 205 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 264
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgc-tggtg 290
||||||| ||||| ||| || | ||| | |||||||| |||||||||| |||||
Sbjct: 265 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgcctggtg 324
Query: 291 ggcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgattt 350
||| || || || | |||||||| || |||||||| |||||||||| ||||| ||||
Sbjct: 325 ggccttcaccggcctcacccacattatcatcgagggaacctttgtctttgctcctaattt 384
Query: 351 cttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggaga 410
|||| || | ||||| || ||| |||||||||||||||||||| || || || ||
Sbjct: 385 cttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtga 444
Query: 411 ctctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtatt 470
||| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| ||
Sbjct: 445 ctccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtctt 504
Query: 471 ggaaggccctgcatcactacttgctgtctacgctattgcatccaggaagtccttcagcca 530
|||||||||||| ||||| ||||||||||| || || ||||| | ||||||| ||||||
Sbjct: 505 ggaaggccctgcttcactccttgctgtctatgccatcgcatcgggcaagtcctacagcca 564
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0455C04
Length = 147940
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 134298 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 134239
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 134238 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 134179
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 134178 tgggcttatttcattggtgcaaacagct 134151
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 137759 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 137700
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 137699 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 137640
Query: 235 gtctccgg 242
|||||||
Sbjct: 137639 atctccgg 137632
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 389 ggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgttacgg 448
|||||||||| || || || ||||| || ||||| || || ||| |||| |||||||| |
Sbjct: 137261 ggaaagagtacagcaaaggtgactccagatatgtcgccagagaccctgctactgttacag 137202
Query: 449 tcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgt 497
| ||||| || || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 137201 ttgaaggaattacagctgtcttggaaggccctgcttcactccttgctgt 137153
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 137499 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 137440
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 137439 ctttgctcctaatttcttc 137421
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0436E04
Length = 144644
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 27422 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 27363
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 27362 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 27303
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 27302 tgggcttatttcattggtgcaaacagct 27275
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 30883 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 30824
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 30823 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 30764
Query: 235 gtctccgg 242
|||||||
Sbjct: 30763 atctccgg 30756
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 389 ggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgttacgg 448
|||||||||| || || || ||||| || ||||| || || ||| |||| |||||||| |
Sbjct: 30385 ggaaagagtacagcaaaggtgactccagatatgtcgccagagaccctgctactgttacag 30326
Query: 449 tcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgt 497
| ||||| || || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 30325 ttgaaggaattacagctgtcttggaaggccctgcttcactccttgctgt 30277
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 30623 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 30564
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 30563 ctttgctcctaatttcttc 30545
>gb|AACV01000007.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000007, whole
genome shotgun sequence
Length = 6862
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Plus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 2608 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 2667
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 2668 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 2727
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 2728 tgggcttatttcattggtgcaaacagct 2755
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
complete sequence
Length = 43342410
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 183554 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 183495
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 183494 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 183435
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 183434 tgggcttatttcattggtgcaaacagct 183407
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 187015 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 186956
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 186955 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 186896
Query: 235 gtctccgg 242
|||||||
Sbjct: 186895 atctccgg 186888
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 389 ggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgttacgg 448
|||||||||| || || || ||||| || ||||| || || ||| |||| |||||||| |
Sbjct: 186517 ggaaagagtacagcaaaggtgactccagatatgtcgccagagaccctgctactgttacag 186458
Query: 449 tcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgt 497
| ||||| || || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 186457 ttgaaggaattacagctgtcttggaaggccctgcttcactccttgctgt 186409
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 186755 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 186696
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 186695 ctttgctcctaatttcttc 186677
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 4735263 cctccatcttcgtcctcctcgccgtctggctcatctccgg 4735302
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 183554 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 183495
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 183494 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 183435
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 183434 tgggcttatttcattggtgcaaacagct 183407
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 187015 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 186956
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 186955 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 186896
Query: 235 gtctccgg 242
|||||||
Sbjct: 186895 atctccgg 186888
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 389 ggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgttacgg 448
|||||||||| || || || ||||| || ||||| || || ||| |||| |||||||| |
Sbjct: 186517 ggaaagagtacagcaaaggtgactccagatatgtcgccagagaccctgctactgttacag 186458
Query: 449 tcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgt 497
| ||||| || || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 186457 ttgaaggaattacagctgtcttggaaggccctgcttcactccttgctgt 186409
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 186755 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 186696
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 186695 ctttgctcctaatttcttc 186677
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 4735103 cctccatcttcgtcctcctcgccgtctggctcatctccgg 4735142
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001
genomic scaffold, whole genome shotgun sequence
Length = 11616395
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 165372 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 165313
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 165312 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 165253
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 165252 tgggcttatttcattggtgcaaacagct 165225
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 169230 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 169171
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 169170 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 169111
Query: 235 gtctccgg 242
|||||||
Sbjct: 169110 atctccgg 169103
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 168970 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 168911
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 168910 ctttgctcctaatttcttc 168892
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 4771207 cctccatcttcgtcctcctcgccgtctggctcatctccgg 4771246
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 165372 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 165313
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 165312 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 165253
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 165252 tgggcttatttcattggtgcaaacagct 165225
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 169230 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 169171
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 169170 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 169111
Query: 235 gtctccgg 242
|||||||
Sbjct: 169110 atctccgg 169103
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 168970 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 168911
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 168910 ctttgctcctaatttcttc 168892
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 4771207 cctccatcttcgtcctcctcgccgtctggctcatctccgg 4771246
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
complete sequence
Length = 43261740
Score = 135 bits (68), Expect = 5e-029
Identities = 128/148 (86%)
Strand = Plus / Minus
Query: 517 aagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgcctg 576
||||||| |||||| || ||||||||| | |||||||| || |||||||| |||||||||
Sbjct: 185752 aagtcctacagccatatcctccagttcactgtctgtcttggtcagctctatggatgcctg 185693
Query: 577 gtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttc 636
|| ||||| || || || |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 185692 gtgtactttattacagcctacttggatggcttcaacttctggactagcccgttctacttc 185633
Query: 637 tgggcgtatttcattggcgcaaacagct 664
||||| ||||||||||| ||||||||||
Sbjct: 185632 tgggcttatttcattggtgcaaacagct 185605
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 189213 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 189154
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 189153 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 189094
Query: 235 gtctccgg 242
|||||||
Sbjct: 189093 atctccgg 189086
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 389 ggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgttacgg 448
|||||||||| || || || ||||| || ||||| || || ||| |||| |||||||| |
Sbjct: 188715 ggaaagagtacagcaaaggtgactccagatatgtcgccagagaccctgctactgttacag 188656
Query: 449 tcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgt 497
| ||||| || || ||||| |||||||||||||| ||||| ||||||||
Sbjct: 188655 ttgaaggaattacagctgtcttggaaggccctgcttcactccttgctgt 188607
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 188953 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 188894
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 188893 ctttgctcctaatttcttc 188875
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 4737461 cctccatcttcgtcctcctcgccgtctggctcatctccgg 4737500
>gb|CV729912.1|CV729912 FLO--03-D03.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--03-D03,
mRNA sequence
Length = 529
Score = 107 bits (54), Expect = 1e-020
Identities = 298/377 (79%), Gaps = 3/377 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| | |||||||||
Sbjct: 150 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctttcttactgtcccag 209
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 210 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 269
Query: 235 gtctccggaagatgt-gtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 270 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 329
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || |||||||| || |||||||| |||||||||| ||||| |||||
Sbjct: 330 gccttcaccggccgcacccacattatcatcgagggaacctttgtctttgctcctaatttc 389
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 390 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 449
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
|| || ||||| || || ||| |||| |||||||| || ||||| || || ||||| |||
Sbjct: 450 tccagatatgtcgccagagaccctgctactgttacagttgaaggaattacagctgtcttg 509
Query: 472 gaaggccctgcatcact 488
||||||||||| |||||
Sbjct: 510 gaaggccctgcttcact 526
>gb|BP184401.1|BP184401 BP184401 pNS rice panicle cDNA, germ cell generating stage Oryza
sativa (japonica cultivar-group) cDNA clone 12FPG087,
mRNA sequence
Length = 542
Score = 107 bits (54), Expect = 1e-020
Identities = 306/389 (78%), Gaps = 3/389 (0%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 115 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 174
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||| | ||||| | |||||||||||||||||
Sbjct: 175 gcccaaatcctcgtgccctacctcgccacctncctcttcctcctcctcgccgtctggctc 234
Query: 235 gtctccggaagatg-tgtc--agattatccaagaccgaccgtctgctcatgtgctggtgg 291
||||||| ||||| ||| || | ||| | |||||||| ||||||||||||||||
Sbjct: 235 atctccgggagatgcagtcgtaggctttccgacaccgaccgctggctcatgtgctggtgg 294
Query: 292 gcatttacagggttgacccacataatgatcgaggggccctttgtcttcactcctgatttc 351
|| || || || | |||||||| || |||||||| |||||| ||| ||||| |||||
Sbjct: 295 gccttcaccggcctcacccacattatcatcgagggaacctttgnctttgctcctaatttc 354
Query: 352 ttcaagaaggagaaccccaatttctttgatgaagtttggaaagagtatagtaagggagac 411
||| || | ||||| || ||| |||||||||||||||||||| || || || |||
Sbjct: 355 ttctccaaccaaaacccttcttacttcgatgaagtttggaaagagtacagcaaaggtgac 414
Query: 412 tctaggtatgttgctagggacactgcaactgttacggtcgaagggatcaccgctgtattg 471
| || ||||| || || ||| |||| |||| ||| || ||||| || || ||||| |||
Sbjct: 415 ttcagatatgtcgccagagaccctgctactgntacagttgaaggaattacagctgtcttg 474
Query: 472 gaaggccctgcatcactacttgctgtcta 500
||| ||||||| ||||| ||||||| |||
Sbjct: 475 gaaagccctgcttcactccttgctgncta 503
>gb|AACV01000009.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000009, whole
genome shotgun sequence
Length = 46753
Score = 87.7 bits (44), Expect = 1e-014
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 115 cacccttacgcgccagccgagctggaccttccgggtttcgtgccgctgaagctgtcccag 174
|||||||||||||| || ||||| |||| ||||| |||||||| || | |||||||||
Sbjct: 46261 cacccttacgcgccggcggagcttcacctcccgggcttcgtgcctctccaactgtcccag 46320
Query: 175 gtcgagatcctcgtgtcctacctcggcgcctccgtcttcgttttcctcgccgtctggctc 234
| | | ||||||||| ||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct: 46321 gcccaaatcctcgtgccctacctcgccacctccctcttcctcctcctcgccgtctggctc 46380
Query: 235 gtctccgg 242
|||||||
Sbjct: 46381 atctccgg 46388
Score = 54.0 bits (27), Expect = 1e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 276 gctcatgtgctggtgggcatttacagggttgacccacataatgatcgaggggccctttgt 335
|||||||||||||||||| || || || | |||||||| || |||||||| |||||||
Sbjct: 46521 gctcatgtgctggtgggccttcaccggcctcacccacattatcatcgagggaacctttgt 46580
Query: 336 cttcactcctgatttcttc 354
||| ||||| ||||||||
Sbjct: 46581 ctttgctcctaatttcttc 46599
>gb|CF327536.1|CF327536 NACL--02-B02.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--02-B02, mRNA sequence
Length = 386
Score = 67.9 bits (34), Expect = 9e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|||||||||||||||||||| || || || ||||| || ||||| || || ||| ||||
Sbjct: 286 gatgaagtttggaaagagtacagcaaaggtgactccagatatgtcgccagagaccctgct 227
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgcatcact 488
|||||||| || ||||| || || ||||| ||| |||||||||| |||||
Sbjct: 226 actgttacagttgaaggaattacagctgtcttgaaaggccctgcttcact 177
>ref|NT_107238.1| Oryza sativa (japonica cultivar-group)
Length = 1596585
Score = 65.9 bits (33), Expect = 4e-008
Identities = 79/95 (83%), Gaps = 7/95 (7%)
Strand = Plus / Minus
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgg 618
||||||||||||||| |||||||||| || ||||||| |||||||||||||||
Sbjct: 522115 cagctctacggatgcttggtttactt-------gcctacttgggtggcttcaacttctgg 522063
Query: 619 gtcggcccgttctacttctgggcgtatttcattgg 653
| | ||||||||||||||||| |||||||||||
Sbjct: 522062 gctagtccgttctacttctgggcttatttcattgg 522028
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 524716 tccaagaccgatcgtttgctcatgtgctggtgggc 524682
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0009J19
Length = 156988
Score = 65.9 bits (33), Expect = 4e-008
Identities = 79/95 (83%), Gaps = 7/95 (7%)
Strand = Plus / Minus
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgg 618
||||||||||||||| |||||||||| || ||||||| |||||||||||||||
Sbjct: 31902 cagctctacggatgcttggtttactt-------gcctacttgggtggcttcaacttctgg 31850
Query: 619 gtcggcccgttctacttctgggcgtatttcattgg 653
| | ||||||||||||||||| |||||||||||
Sbjct: 31849 gctagtccgttctacttctgggcttatttcattgg 31815
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 34503 tccaagaccgatcgtttgctcatgtgctggtgggc 34469
>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0485D10
Length = 147464
Score = 65.9 bits (33), Expect = 4e-008
Identities = 79/95 (83%), Gaps = 7/95 (7%)
Strand = Plus / Minus
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgg 618
||||||||||||||| |||||||||| || ||||||| |||||||||||||||
Sbjct: 104797 cagctctacggatgcttggtttactt-------gcctacttgggtggcttcaacttctgg 104745
Query: 619 gtcggcccgttctacttctgggcgtatttcattgg 653
| | ||||||||||||||||| |||||||||||
Sbjct: 104744 gctagtccgttctacttctgggcttatttcattgg 104710
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 107398 tccaagaccgatcgtttgctcatgtgctggtgggc 107364
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 65.9 bits (33), Expect = 4e-008
Identities = 79/95 (83%), Gaps = 7/95 (7%)
Strand = Plus / Minus
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgg 618
||||||||||||||| |||||||||| || ||||||| |||||||||||||||
Sbjct: 18939232 cagctctacggatgcttggtttactt-------gcctacttgggtggcttcaacttctgg 18939180
Query: 619 gtcggcccgttctacttctgggcgtatttcattgg 653
| | ||||||||||||||||| |||||||||||
Sbjct: 18939179 gctagtccgttctacttctgggcttatttcattgg 18939145
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 18941833 tccaagaccgatcgtttgctcatgtgctggtgggc 18941799
>gb|AACV01014167.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014167, whole
genome shotgun sequence
Length = 5408
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 3425 tccaagaccgatcgtttgctcatgtgctggtgggc 3459
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053
genomic scaffold, whole genome shotgun sequence
Length = 12033173
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 384496 tccaagaccgatcgtttgctcatgtgctggtgggc 384462
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggc 293
||||||||||| ||| |||||||||||||||||||
Sbjct: 18083233 tccaagaccgatcgtttgctcatgtgctggtgggc 18083199
>gb|AACV01000332.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000332, whole
genome shotgun sequence
Length = 19591
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 5400 cctccatcttcgtcctcctcgccgtctggctcatctccgg 5361
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0695A04
Length = 158133
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 144677 cctccatcttcgtcctcctcgccgtctggctcatctccgg 144716
>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0512G09
Length = 146921
Score = 48.1 bits (24), Expect = 0.008
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 203 cctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 97706 cctccatcttcgtcctcctcgccgtctggctcatctccgg 97745
>gb|CF280665.1|CF280665 14ETL--07-G21.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--07-G21, mRNA sequence
Length = 398
Score = 44.1 bits (22), Expect = 0.13
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 688 atcgccataaggtcctggaagaaaacttgcgccgcgtttcaagctgagaaggtgaaga 745
|||||||||||| ||||||||| | ||| || || ||||||| ||| ||||||||||
Sbjct: 352 atcgccataaggagctggaagaagatttgtgcagcatttcaaggtgaaaaggtgaaga 295
>gb|BP184402.1|BP184402 BP184402 pNS rice panicle cDNA, germ cell generating stage Oryza
sativa (japonica cultivar-group) cDNA clone 12FPG087,
mRNA sequence
Length = 371
Score = 44.1 bits (22), Expect = 0.13
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 688 atcgccataaggtcctggaagaaaacttgcgccgcgtttcaagctgagaaggtgaaga 745
|||||||||||| ||||||||| | ||| || || ||||||| ||| ||||||||||
Sbjct: 17 atcgccataaggagctggaagaagatttgtgcagcatttcaaggtgaaaaggtgaaga 74
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 215 ttttcctcgccgtctggctcgtctcc 240
||||||||||||||| ||||||||||
Sbjct: 1262370 ttttcctcgccgtctcgctcgtctcc 1262395
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0038K02
Length = 118635
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 215 ttttcctcgccgtctggctcgtctcc 240
||||||||||||||| ||||||||||
Sbjct: 101249 ttttcctcgccgtctcgctcgtctcc 101274
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.13
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 215 ttttcctcgccgtctggctcgtctcc 240
||||||||||||||| ||||||||||
Sbjct: 21368870 ttttcctcgccgtctcgctcgtctcc 21368895
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,088,216
Number of Sequences: 438736
Number of extensions: 1088216
Number of successful extensions: 5551
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5327
Number of HSP's gapped (non-prelim): 210
length of query: 900
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 879
effective length of database: 2,791,206,460
effective search space: 2453470478340
effective search space used: 2453470478340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)