BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MAD56_a5f4.3.2
(1520 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB654543.1|CB654543 OSJNEc07C14.f OSJNEc Oryza sativa (j... 50 0.004
gb|CB684523.1|CB684523 OSJNEf14C04.f OSJNEf Oryza sativa (j... 50 0.004
dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC O... 50 0.004
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 50 0.004
gb|AACV01025290.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|AU163562.1|AU163562 AU163562 Rice panicle at flowering s... 46 0.056
gb|AU163781.1|AU163781 AU163781 Rice panicle at ripening st... 44 0.22
>gb|CB654543.1|CB654543 OSJNEc07C14.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07C14 5', mRNA sequence
Length = 731
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 191 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 243
>gb|CB684523.1|CB684523 OSJNEf14C04.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14C04 5', mRNA sequence
Length = 768
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 216 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 268
>dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G04, full
insert sequence
Length = 1637
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 246 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 298
>dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full
insert sequence
Length = 1741
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 172 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 224
>dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108M03, full
insert sequence
Length = 1582
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 172 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 224
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 168063
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 145700 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 145648
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 1844851 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 1844799
>gb|AACV01025290.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025290, whole
genome shotgun sequence
Length = 23338
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 4830 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 4882
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119
genomic scaffold, whole genome shotgun sequence
Length = 4546750
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 306867 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 306815
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 19490513 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 19490461
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 23332582 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 23332530
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
|||||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 23260773 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 23260721
>gb|AU163562.1|AU163562 AU163562 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1773, mRNA sequence
Length = 266
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 285 gtgttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccg 335
|||||||| || |||||||| || ||||| ||||| ||||||||||||||
Sbjct: 145 gtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccg 195
>gb|AU163781.1|AU163781 AU163781 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11021, mRNA sequence
Length = 351
Score = 44.1 bits (22), Expect = 0.22
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 288 ttcggtgattcgctggtcgatgtcggaaacaataacttcctgccgccgcc 337
||||| || |||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 238 ttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgcc 287
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,136,438
Number of Sequences: 438736
Number of extensions: 2136438
Number of successful extensions: 15193
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15037
Number of HSP's gapped (non-prelim): 156
length of query: 1520
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1499
effective length of database: 2,791,206,460
effective search space: 4184018483540
effective search space used: 4184018483540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)