BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100767.1| Oryza sativa (japonica cultivar-group) cDNA... 513 e-143
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 513 e-143
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 513 e-143
gb|AACV01006425.1| Oryza sativa (japonica cultivar-group) c... 513 e-143
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 513 e-143
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 513 e-143
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 513 e-143
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 513 e-143
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 513 e-143
gb|AU172460.1|AU172460 AU172460 Rice panicle at flowering s... 335 3e-089
gb|C72715.2|C72715 C72715 Rice panicle at flowering stage O... 212 3e-052
dbj|AP004333.3| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
dbj|AK070356.1| Oryza sativa (japonica cultivar-group) cDNA... 168 4e-039
gb|AACV01017061.1| Oryza sativa (japonica cultivar-group) c... 168 4e-039
ref|XM_479614.1| Oryza sativa (japonica cultivar-group), mRNA 168 4e-039
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 168 4e-039
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
gb|C72142.1|C72142 C72142 Rice panicle at flowering stage O... 133 2e-028
dbj|AP004344.3| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
dbj|AP006266.3| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|AACV01031557.1| Oryza sativa (japonica cultivar-group) C... 88 1e-014
ref|XM_477270.1| Oryza sativa (japonica cultivar-group), mRNA 88 1e-014
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 88 1e-014
gb|CH402366.1| Oryza sativa (japonica cultivar-group) scaff... 88 1e-014
gb|AC099400.2| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|AACV01019518.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 84 2e-013
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|AC069324.3| Oryza sativa (japonica cultivar-group) chrom... 82 8e-013
gb|CB650484.1|CB650484 OSJNEb14P07.f OSJNEb Oryza sativa (j... 64 2e-007
gb|CB661935.1|CB661935 OSJNEd05G23.f OSJNEd Oryza sativa (j... 64 2e-007
dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA... 64 2e-007
gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 ... 64 2e-007
gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 ... 64 2e-007
gb|AACV01008216.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-007
ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-007
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 64 2e-007
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 64 2e-007
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
dbj|AK103462.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AK106087.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AK120852.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AACV01008846.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_474658.1| Oryza sativa (japonica cultivar-group), p... 58 1e-005
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromoso... 58 1e-005
emb|AL662933.4|OSJN00145 Oryza sativa (japonica cultivar-gr... 58 1e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AK110972.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.045
gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 ... 46 0.045
gb|AC150702.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|AACV01006801.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
gb|AACV01023249.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
ref|XM_470831.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.045
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 46 0.045
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
dbj|AK059883.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC O... 44 0.18
ref|NT_107151.1| Oryza sativa (japonica cultivar-group) 44 0.18
gb|AC120990.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|AC120986.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|AACV01012727.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01023965.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|NT_107221.1| Oryza sativa (japonica cultivar-group) 44 0.18
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
>dbj|AK100767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119K22, full
insert sequence
Length = 1175
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 591 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 650
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 651 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 710
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 711 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 770
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 771 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 827
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 887
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 888 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 947
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 948 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 1007
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 1008 accacctccagaaacct 1024
Score = 222 bits (112), Expect = 3e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 222 cccacaccgatgcccaagaggctggacgggaaggtggccattgtgacgggcggcgcgcgc 281
||||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||| |
Sbjct: 168 cccactcccatgcccaagaggctggaagggaaggtggccattgtcaccggcggggcgagg 227
Query: 282 gggatcggcgaggccatcgtgcggctgttcgccaagcacggggcccgggtggtgatcgcg 341
|||||||| ||||| |||||| ||||||||| |||||||||||| |||||||||||||
Sbjct: 228 gggatcggggaggcgatcgtgaggctgttcgtgaagcacggggccaaggtggtgatcgcg 287
Query: 342 gacatcgacgacgccgcgggggaggcgctggcgtcggcgctgggcccgcaggtcagcttc 401
|||||||||||||| ||||| |||||||||||| |||||||||| ||||| ||| | |||
Sbjct: 288 gacatcgacgacgcggcgggcgaggcgctggcggcggcgctggggccgcacgtcgggttc 347
Query: 402 gtgcgctgcgacgtgtccgtggaggacgacgt 433
||||| ||||||||||| |||||||| |||||
Sbjct: 348 gtgcggtgcgacgtgtcggtggaggaggacgt 379
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 432 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 491
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 492 gacgccggggagttcgaccgcgtgctccgcgtcaa 526
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 33 tacatgcacactaccctcgcctcctacgcc 62
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 30505 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 30564
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 30565 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 30624
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 30625 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 30684
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 30685 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 30741
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30742 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 30801
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 30802 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 30861
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 30862 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 30921
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 30922 accacctccagaaacct 30938
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 30100 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 30159
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 30160 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 30219
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 30220 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 30279
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 30280 gtggaggaggacgt 30293
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 30346 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 30405
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 30406 gacgccggggagttcgaccgcgtgctccgcgtcaa 30440
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 29844 tacatgcacactaccctcgcctcctacgcc 29873
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10,
complete sequence
Length = 139714
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 131245 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 131304
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 131305 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 131364
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 131365 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 131424
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 131425 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 131481
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131482 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 131541
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 131542 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 131601
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 131602 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 131661
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 131662 accacctccagaaacct 131678
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 130840 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 130899
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 130900 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 130959
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 130960 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 131019
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 131020 gtggaggaggacgt 131033
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 131086 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 131145
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 131146 gacgccggggagttcgaccgcgtgctccgcgtcaa 131180
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 130584 tacatgcacactaccctcgcctcctacgcc 130613
>gb|AACV01006425.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006425, whole
genome shotgun sequence
Length = 21315
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Minus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 10612 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 10553
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 10552 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 10493
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 10492 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 10433
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 10432 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 10376
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10375 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 10316
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 10315 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 10256
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 10255 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 10196
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 10195 accacctccagaaacct 10179
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Minus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 11018 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 10959
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10958 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 10899
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 10898 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 10839
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 10838 gtggaggaggacgt 10825
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Minus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 10772 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 10713
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 10712 gacgccggggagttcgaccgcgtgctccgcgtcaa 10678
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 11274 tacatgcacactaccctcgcctcctacgcc 11245
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 1818609 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 1818668
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1818669 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 1818728
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 1818729 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 1818788
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 1818789 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 1818845
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818846 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 1818905
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 1818906 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 1818965
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 1818966 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 1819025
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 1819026 accacctccagaaacct 1819042
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 1818204 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 1818263
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 1818264 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 1818323
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 1818324 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 1818383
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 1818384 gtggaggaggacgt 1818397
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 1818450 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 1818509
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 1818510 gacgccggggagttcgaccgcgtgctccgcgtcaa 1818544
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 1817948 tacatgcacactaccctcgcctcctacgcc 1817977
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 10560271 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 10560330
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 10560331 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 10560390
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 10560391 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 10560450
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 10560451 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 10560507
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10560508 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 10560567
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 10560568 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 10560627
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 10560628 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 10560687
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 10560688 accacctccagaaacct 10560704
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 10559865 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 10559924
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10559925 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 10559984
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 10559985 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 10560044
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 10560045 gtggaggaggacgt 10560058
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 10560111 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 10560170
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 10560171 gacgccggggagttcgaccgcgtgctccgcgtcaa 10560205
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 10559609 tacatgcacactaccctcgcctcctacgcc 10559638
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 10752633 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 10752692
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 10752693 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 10752752
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 10752753 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 10752812
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 10752813 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 10752869
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10752870 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 10752929
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 10752930 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 10752989
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 10752990 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 10753049
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 10753050 accacctccagaaacct 10753066
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 10752227 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 10752286
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10752287 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 10752346
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 10752347 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 10752406
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 10752407 gtggaggaggacgt 10752420
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 10752473 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 10752532
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 10752533 gacgccggggagttcgaccgcgtgctccgcgtcaa 10752567
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 35689893 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 35689944
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 860 cgacgccgaccgagacctcgacctcgacctcgacg 894
|||||||||| ||||||||||||||||||||||
Sbjct: 16282045 cgacgccgacatcgacctcgacctcgacctcgacg 16282079
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 873 gacctcgacctcgacctcgacg 894
||||||||||||||||||||||
Sbjct: 16282094 gacctcgacctcgacctcgacg 16282115
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 10751971 tacatgcacactaccctcgcctcctacgcc 10752000
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 10472793 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 10472852
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 10472853 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 10472912
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 10472913 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 10472972
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 10472973 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 10473029
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10473030 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 10473089
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 10473090 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 10473149
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 10473150 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 10473209
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 10473210 accacctccagaaacct 10473226
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 10472388 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 10472447
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10472448 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 10472507
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 10472508 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 10472567
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 10472568 gtggaggaggacgt 10472581
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 10472634 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 10472693
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 10472694 gacgccggggagttcgaccgcgtgctccgcgtcaa 10472728
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 34789287 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 34789338
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 860 cgacgccgaccgagacctcgacctcgacctcgacg 894
|||||||||| ||||||||||||||||||||||
Sbjct: 15632283 cgacgccgacatcgacctcgacctcgacctcgacg 15632317
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 873 gacctcgacctcgacctcgacg 894
||||||||||||||||||||||
Sbjct: 15632332 gacctcgacctcgacctcgacg 15632353
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 10472132 tacatgcacactaccctcgcctcctacgcc 10472161
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 513 bits (259), Expect = e-143
Identities = 393/437 (89%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 648 agcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcctac 707
|||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 10474692 agcatcatctccgtcgccagcgtcgccggcgtgctcggcggcctcggcccgcacgcctac 10474751
Query: 708 accgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgcgcg 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 10474752 accgcctccaagcacgccatcgtggggctcaccaagaacgccgcctgcgagctcggcgcc 10474811
Query: 768 cacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatcaac 827
||||| |||| ||||||||| |||| ||||||||||||||||| || ||||||||||||
Sbjct: 10474812 cacggcatccgcgtcaactgcatctcccccttcggcgtcgccaccccgatgctcatcaac 10474871
Query: 828 gcctggcgccagggccacgacgacgccaccgccgacgccgaccgagacctcgacctcgac 887
|||||||||||||||||||||| | |||||||||||| || | ||| |||| |||||
Sbjct: 10474872 gcctggcgccagggccacgacgcctccaccgccgacgacgcc---gacgccgacatcgac 10474928
Query: 888 ctcgacgtcaccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 947
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10474929 ctcgacatcgccgtgcccagcgaccaggaggtggagaagatggaggaggtggtcaggggc 10474988
Query: 948 ctggccacgctcaagggccccacgctcaggcccagggacatcgccgaggcggtgctcttc 1007
|| ||||||||||||||| | ||||| || |||||||||||||||||||||| |||||||
Sbjct: 10474989 ctcgccacgctcaagggcgcgacgctgagacccagggacatcgccgaggcggcgctcttc 10475048
Query: 1008 ctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggcgtc 1067
|| ||||||||||| |||| || || || ||||||||||| ||||| ||||||||||||
Sbjct: 10475049 ctcgccagcgacgactccagatacatttccggccacaacctcgtcgtcgacggcggcgtc 10475108
Query: 1068 accacatccaggaacct 1084
||||| ||||| |||||
Sbjct: 10475109 accacctccagaaacct 10475125
Score = 202 bits (102), Expect = 3e-049
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 240 aggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatc 299
|||||||| ||||||||||||||||| || ||||| ||| | |||||||| ||||| |||
Sbjct: 10474287 aggctggaagggaaggtggccattgtcaccggcggggcgagggggatcggggaggcgatc 10474346
Query: 300 gtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgcg 359
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10474347 gtgaggctgttcgtgaagcacggggccaaggtggtgatcgcggacatcgacgacgcggcg 10474406
Query: 360 ggggaggcgctggcgtcggcgctgggcccgcaggtcagcttcgtgcgctgcgacgtgtcc 419
|| |||||||||||| |||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 10474407 ggcgaggcgctggcggcggcgctggggccgcacgtcgggttcgtgcggtgcgacgtgtcg 10474466
Query: 420 gtggaggacgacgt 433
|||||||| |||||
Sbjct: 10474467 gtggaggaggacgt 10474480
Score = 149 bits (75), Expect = 4e-033
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 10474533 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaagagcatcctgtcgttc 10474592
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| | ||||||||||||||||||||||||||
Sbjct: 10474593 gacgccggggagttcgaccgcgtgctccgcgtcaa 10474627
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 34699215 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 34699266
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 860 cgacgccgaccgagacctcgacctcgacctcgacg 894
|||||||||| ||||||||||||||||||||||
Sbjct: 15637749 cgacgccgacatcgacctcgacctcgacctcgacg 15637783
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 873 gacctcgacctcgacctcgacg 894
||||||||||||||||||||||
Sbjct: 15637798 gacctcgacctcgacctcgacg 15637819
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 tacatgcacgctagcctcgcctcctacgcc 113
||||||||| ||| ||||||||||||||||
Sbjct: 10474031 tacatgcacactaccctcgcctcctacgcc 10474060
>gb|AU172460.1|AU172460 AU172460 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1070, mRNA sequence
Length = 458
Score = 335 bits (169), Expect = 3e-089
Identities = 292/333 (87%), Gaps = 3/333 (0%)
Strand = Plus / Plus
Query: 752 ctgcgagctgcgcgcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccac 811
||||||||| |||| ||||| |||| ||||||||| |||| |||||||||||||||||
Sbjct: 1 ctgcgagctcggcgcccacggcatccgcgtcaactgcatctcccccttcggcgtcgccac 60
Query: 812 gcccatgctcatcaacgcctggcgccagggccacgacgacgccaccgccgacgccgaccg 871
|| |||||||||||||||||||||||||||||||||| | |||||||||||| || |
Sbjct: 61 cccgatgctcatcaacgcctggcgccagggccacgacgcctccaccgccgacgacgcc-- 118
Query: 872 agacctcgacctcgacctcgacgtcaccgtgcccagcgaccaggaggtggagaagatgga 931
||| |||| ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct: 119 -gacgccgacatcgacctcgacatcgccgtgcccagcgaccaggaggtggagaanatgga 177
Query: 932 ggaggtggtcaggggcctggccacgctcaagggccccacgctcaggcccagggacatcgc 991
|||||||||||||||||| ||||||||||||||| | ||||| || ||||||||||||||
Sbjct: 178 ggaggtggtcaggggcctcgccacgctcaagggcgcgacgctgagacccagggacatcgc 237
Query: 992 cgaggcggtgctcttcctggccagcgacgaggccaggtatatatcgggccacaaccttgt 1051
|||||||| ||| ||||| ||||||||||| |||| || || || ||||||||||| ||
Sbjct: 238 cgaggcggcgctnttcctcgccagcgacgactccagatacatttccggccacaacctcgt 297
Query: 1052 cgtggacggcggcgtcaccacatccaggaacct 1084
||| ||||||||||||||||| ||||| |||||
Sbjct: 298 cgtcgacggcggcgtcaccacctccagaaacct 330
>gb|C72715.2|C72715 C72715 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2112_1A, mRNA sequence
Length = 389
Score = 212 bits (107), Expect = 3e-052
Identities = 179/203 (88%)
Strand = Plus / Plus
Query: 222 cccacaccgatgcccaagaggctggacgggaaggtggccattgtgacgggcggcgcgcgc 281
||||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||| |
Sbjct: 131 cccactcccatgcccaagaggctggaagggaaggtggccattgtcaccggcggggcgagg 190
Query: 282 gggatcggcgaggccatcgtgcggctgttcgccaagcacggggcccgggtggtgatcgcg 341
|||||||| ||||| |||||| ||||||||| |||||||||||| |||||||||||||
Sbjct: 191 gggatcggggaggcgatcgtgaggctgttcgtgaagcacggggccaaggtggtgatcgcg 250
Query: 342 gacatcgacgacgccgcgggggaggcgctggcgtcggcgctgggcccgcaggtcagcttc 401
|||||||||||||| ||||| |||||||||||| |||||||||| ||||| ||| | |||
Sbjct: 251 gacatcgacgacgcggcgggcgaggcgctggcggcggcgctggggccgcacgtcgggttc 310
Query: 402 gtgcgctgcgacgtgtccgtgga 424
||||| ||||||||||| |||||
Sbjct: 311 gtgcggtgcgacgtgtcggtgga 333
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0034A04
Length = 151263
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 27851 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 27792
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 27791 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 27732
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 27731 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 27672
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 27671 aacgcgtggcggcaggg 27655
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 27604 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 27545
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 27544 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 27485
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 27484 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 27426
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 28007 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 27948
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 27947 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 27913
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 28255 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 28196
Query: 301 t 301
|
Sbjct: 28195 t 28195
>dbj|AK070356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B21, full
insert sequence
Length = 1221
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Plus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 602 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 661
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 662 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 721
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 722 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 781
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 782 aacgcgtggcggcaggg 798
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 849 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 908
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 909 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 968
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 969 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 1027
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 446 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 505
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 506 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 540
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 198 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 257
Query: 301 t 301
|
Sbjct: 258 t 258
>gb|AACV01017061.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017061, whole
genome shotgun sequence
Length = 10712
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Plus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 10255 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 10314
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 10315 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 10374
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 10375 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 10434
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 10435 aacgcgtggcggcaggg 10451
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 10502 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 10561
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 10562 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 10621
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 10622 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 10680
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 10098 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 10157
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 10158 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 10192
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 9850 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 9909
Query: 301 t 301
|
Sbjct: 9910 t 9910
>ref|XM_479614.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1221
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Plus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 602 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 661
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 662 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 721
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 722 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 781
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 782 aacgcgtggcggcaggg 798
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 849 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 908
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 909 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 968
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 969 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 1027
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 446 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 505
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 506 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 540
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 198 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 257
Query: 301 t 301
|
Sbjct: 258 t 258
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 16977934 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 16977875
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 16977874 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 16977815
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 16977814 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 16977755
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 16977754 aacgcgtggcggcaggg 16977738
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 16977687 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 16977628
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 16977627 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 16977568
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 16977567 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 16977509
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 16978090 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 16978031
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 16978030 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 16977996
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 16978338 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 16978279
Query: 301 t 301
|
Sbjct: 16978278 t 16978278
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 14963040 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 14962981
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 14962980 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 14962921
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 14962920 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 14962861
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 14962860 aacgcgtggcggcaggg 14962844
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 14962793 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 14962734
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 14962733 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 14962674
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 14962673 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 14962615
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 14963197 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 14963138
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 14963137 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 14963103
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 14963445 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 14963386
Query: 301 t 301
|
Sbjct: 14963385 t 14963385
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 28362479 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 28362420
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 28362419 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 28362360
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 28362359 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 28362300
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 28362299 aacgcgtggcggcaggg 28362283
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 28362232 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 28362173
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 28362172 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 28362113
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 28362112 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 28362054
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 28362636 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 28362577
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 28362576 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 28362542
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 28362884 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 28362825
Query: 301 t 301
|
Sbjct: 28362824 t 28362824
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 168 bits (85), Expect = 4e-039
Identities = 169/197 (85%)
Strand = Plus / Minus
Query: 645 gggagcatcgtctccgtcgccagcgtcgcggccgtgctgggcggcctcggcccgcacgcc 704
||||||||||| || || || ||||| |||| |||||||||||||||||||||||||||
Sbjct: 29364929 gggagcatcgtgtcggtggcgagcgtggcgggcgtgctgggcggcctcggcccgcacgcg 29364870
Query: 705 tacaccgcctccaagcacgccatcgtcgggctcaccaagaacgccgcctgcgagctgcgc 764
||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct: 29364869 tacacggcctccaagcacgccctagtggggctcaccaagaacgccgcctgcgagctcggg 29364810
Query: 765 gcgcacggggtccgggtcaactgcgtctcgcccttcggcgtcgccacgcccatgctcatc 824
| |||||| |||| ||||||||| |||| ||||||||||| || ||||| ||||| |
Sbjct: 29364809 gagcacggcatccgcgtcaactgcatctcccccttcggcgtggcgacgccgatgctggtg 29364750
Query: 825 aacgcctggcgccaggg 841
||||| ||||| |||||
Sbjct: 29364749 aacgcgtggcggcaggg 29364733
Score = 133 bits (67), Expect = 2e-028
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 913 aggaggtggagaagatggaggaggtggtcaggggcctggccacgctcaagggccccacgc 972
||||||||||||||||||||||| |||| || | ||||| ||||||||||| || ||||
Sbjct: 29364682 aggaggtggagaagatggaggagatggtgcggaggctggcgacgctcaaggggccgacgc 29364623
Query: 973 tcaggcccagggacatcgccgaggcggtgctcttcctggccagcgacgaggccaggtata 1032
| || | | |||||||| ||||||| | | |||||||||||||||||| |||||||
Sbjct: 29364622 tgcgggcaggcgacatcgcggaggcggcggtgttcctggccagcgacgagtccaggtacg 29364563
Query: 1033 tatcgggccacaaccttgtcgtggacggcggcgtcaccacatccaggaacctcatcggc 1091
| || ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 29364562 tgtccggccacaacctcgtcgtcgacggcggcgtcaccacctccagaaacgtcatcggc 29364504
Score = 125 bits (63), Expect = 6e-026
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 489 tgcaacaacgccggggtgctgggccgccagacgcgcgccgccaggagcatcctgtccttc 548
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||
Sbjct: 29365085 tgcaacaacgccggggtgctgggccgccagacgcgcggcgccaagagcatcgcgtccctc 29365026
Query: 549 gacgcggccgagttcgaccgcgtgctccgcgtcaa 583
||||| |||||||||| ||||||||| ||||||||
Sbjct: 29365025 gacgccgccgagttcgcccgcgtgctgcgcgtcaa 29364991
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 8272705 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 8272646
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 8272645 cctagtgtagctcaccaagaacgccgcctgcgagct 8272610
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 241 ggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccatcg 300
||||||| |||||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 29365333 ggctggaggggaaggtggccatcgtcaccggcggctcgcgtggcatcggcgaagccatcg 29365274
Query: 301 t 301
|
Sbjct: 29365273 t 29365273
>gb|C72142.1|C72142 C72142 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1070_2A, mRNA sequence
Length = 342
Score = 133 bits (67), Expect = 2e-028
Identities = 121/140 (86%)
Strand = Plus / Plus
Query: 222 cccacaccgatgcccaagaggctggacgggaaggtggccattgtgacgggcggcgcgcgc 281
||||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||| |
Sbjct: 154 cccactcccatgcccaagaggctggaagggaaggtggccattgtcaccggcggggcgagg 213
Query: 282 gggatcggcgaggccatcgtgcggctgttcgccaagcacggggcccgggtggtgatcgcg 341
|||||| | ||||| |||||| ||||||||| |||||||||||| |||||||||||||
Sbjct: 214 gggatcngggaggcgatcgtgaggctgttcgtgaagcacggggccaaggtggtgatcgcg 273
Query: 342 gacatcgacgacgccgcggg 361
||||||||| ||| |||||
Sbjct: 274 gacatcgacnncgcggcggg 293
>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0639B07
Length = 138780
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 67817 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 67758
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 67757 cctagtgtagctcaccaagaacgccgcctgcgagct 67722
>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0003K21
Length = 158810
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 155728 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 155669
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 155668 cctagtgtagctcaccaagaacgccgcctgcgagct 155633
>gb|AACV01031557.1| Oryza sativa (japonica cultivar-group) Ctg031557, whole genome
shotgun sequence
Length = 901
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 754 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 695
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 694 cctagtgtagctcaccaagaacgccgcctgcgagct 659
>ref|XM_477270.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 231
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 111 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 52
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 51 cctagtgtagctcaccaagaacgccgcctgcgagct 16
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 8228777 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 8228718
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 8228717 cctagtgtagctcaccaagaacgccgcctgcgagct 8228682
>gb|CH402366.1| Oryza sativa (japonica cultivar-group) scaffold004526 genomic
scaffold, whole genome shotgun sequence
Length = 3047
Score = 87.7 bits (44), Expect = 1e-014
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 666 agcgtcgcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgc 724
||||| |||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||
Sbjct: 148 agcgtggcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgc 207
Query: 725 catcgtcgggctcaccaagaacgccgcctgcgagct 760
| | || |||||||||||||||||||||||||||
Sbjct: 208 cctagtgtagctcaccaagaacgccgcctgcgagct 243
>gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0096E22, complete sequence
Length = 133846
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 87328 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 87387
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 87388 gtagctcaccaagaacgccgcctgcgagct 87417
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 237665 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 237724
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 237725 gtagctcaccaagaacgccgcctgcgagct 237754
>gb|AACV01019518.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019518, whole
genome shotgun sequence
Length = 39091
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 10317 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 10376
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 10377 gtagctcaccaagaacgccgcctgcgagct 10406
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 242804 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 242863
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 242864 gtagctcaccaagaacgccgcctgcgagct 242893
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078 genomic
scaffold, whole genome shotgun sequence
Length = 4067473
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 1670069 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 1670128
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 1670129 gtagctcaccaagaacgccgcctgcgagct 1670158
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 7076307 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 7076366
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 7076367 gtagctcaccaagaacgccgcctgcgagct 7076396
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
complete sequence
Length = 22685906
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 237665 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 237724
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 237725 gtagctcaccaagaacgccgcctgcgagct 237754
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 83.8 bits (42), Expect = 2e-013
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 672 gcggccgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgt 730
|||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | ||
Sbjct: 237663 gcgggcgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagt 237722
Query: 731 cgggctcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||||
Sbjct: 237723 gtagctcaccaagaacgccgcctgcgagct 237752
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0071K19, complete sequence
Length = 174752
Score = 81.8 bits (41), Expect = 8e-013
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 677 cgtgctgggcggcctcggccc-gcacgcctacaccgcctccaagcacgccatcgtcgggc 735
|||||| |||||||| ||||| ||||||| |||| ||||||||||||||| | || ||
Sbjct: 2728 cgtgctcggcggccttggccccgcacgcccacacggcctccaagcacgccctagtgtagc 2787
Query: 736 tcaccaagaacgccgcctgcgagct 760
|||||||||||||||||||||||||
Sbjct: 2788 tcaccaagaacgccgcctgcgagct 2812
>gb|CB650484.1|CB650484 OSJNEb14P07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14P07 5', mRNA sequence
Length = 810
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 374 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 425
>gb|CB661935.1|CB661935 OSJNEd05G23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05G23 5', mRNA sequence
Length = 719
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 7 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 58
>dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161B14, full
insert sequence
Length = 1042
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 47 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 98
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
sequence
Length = 164236
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 156932 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 156983
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
sequence
Length = 164352
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 163435 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 163384
>gb|AACV01008216.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008216, whole
genome shotgun sequence
Length = 21283
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 16786 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 16837
>ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 783
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 2 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 53
>ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1369
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 374 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 425
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 918 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 969
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 1356412 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 1356463
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 244 tggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggc 295
||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||
Sbjct: 8423730 tggacggcaaggtggccatcgtgaccggcggcgcgagcggcatcggcgaggc 8423781
>dbj|AK103462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129M10, full
insert sequence
Length = 1265
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 742 agaacgccgcctgcgagctgcgcgcgcacggggtccgggtcaactgcgtctcgcccttcg 801
||||||| ||| |||||||| || ||||||| |||| ||||||||||| |||||| ||
Sbjct: 620 agaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgcccgccg 679
Query: 802 gcgtcgccacgcc 814
| |||||||||||
Sbjct: 680 gggtcgccacgcc 692
>dbj|AK106087.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B04, full
insert sequence
Length = 1136
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 742 agaacgccgcctgcgagctgcgcgcgcacggggtccgggtcaactgcgtctcgcccttcg 801
||||||| ||| |||||||| || ||||||| |||| ||||||||||| |||||| ||
Sbjct: 618 agaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgcccgccg 677
Query: 802 gcgtcgccacgcc 814
| |||||||||||
Sbjct: 678 gggtcgccacgcc 690
>dbj|AK120852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023N20, full
insert sequence
Length = 1133
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 742 agaacgccgcctgcgagctgcgcgcgcacggggtccgggtcaactgcgtctcgcccttcg 801
||||||| ||| |||||||| || ||||||| |||| ||||||||||| |||||| ||
Sbjct: 615 agaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgcccgccg 674
Query: 802 gcgtcgccacgcc 814
| |||||||||||
Sbjct: 675 gggtcgccacgcc 687
>gb|AACV01008846.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008846, whole
genome shotgun sequence
Length = 16376
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 742 agaacgccgcctgcgagctgcgcgcgcacggggtccgggtcaactgcgtctcgcccttcg 801
||||||| ||| |||||||| || ||||||| |||| ||||||||||| |||||| ||
Sbjct: 14177 agaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgcccgccg 14118
Query: 802 gcgtcgccacgcc 814
| |||||||||||
Sbjct: 14117 gggtcgccacgcc 14105
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,404,839
Number of Sequences: 438736
Number of extensions: 2404839
Number of successful extensions: 30165
Number of sequences better than 0.5: 84
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27877
Number of HSP's gapped (non-prelim): 2220
length of query: 1220
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1199
effective length of database: 2,791,206,460
effective search space: 3346656545540
effective search space used: 3346656545540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)