BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L18925.2.1
(1221 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA... 430 e-118
gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS ... 430 e-118
gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-... 321 5e-085
dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA... 234 9e-059
gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-... 234 9e-059
ref|NM_188300.1| Oryza sativa (japonica cultivar-group), p... 234 9e-059
emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-gro... 210 1e-051
emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC O... 210 1e-051
emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC O... 210 1e-051
emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B... 210 1e-051
ref|NT_107159.1| Oryza sativa (japonica cultivar-group) 210 1e-051
gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) c... 210 1e-051
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 210 1e-051
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 210 1e-051
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 210 1e-051
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 210 1e-051
gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) c... 206 2e-050
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 206 2e-050
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 206 2e-050
dbj|AP003105.2| Oryza sativa (japonica cultivar-group) geno... 206 2e-050
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 206 2e-050
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 206 2e-050
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 206 2e-050
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 206 2e-050
dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA... 188 5e-045
dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA... 188 5e-045
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) c... 168 4e-039
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 168 4e-039
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda ph... 165 7e-038
gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (j... 157 2e-035
gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (j... 157 2e-035
gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (j... 157 2e-035
gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing ... 157 2e-035
gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing ... 157 2e-035
dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA... 157 2e-035
dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA... 157 2e-035
gb|AY345224.1| Oryza sativa (japonica cultivar-group) trans... 157 2e-035
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 157 2e-035
gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-... 157 2e-035
gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-... 157 2e-035
gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
ref|NM_197541.1| Oryza sativa (japonica cultivar-group) put... 157 2e-035
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 157 2e-035
ref|XM_473638.1| Oryza sativa (japonica cultivar-group), p... 157 2e-035
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 157 2e-035
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromoso... 157 2e-035
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
dbj|AK070958.1| Oryza sativa (japonica cultivar-group) cDNA... 149 4e-033
gb|AY177693.1| Oryza sativa (japonica cultivar-group) trans... 149 4e-033
gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJN... 149 4e-033
gb|AY551913.1| Oryza sativa (japonica cultivar-group) MADS-... 149 4e-033
gb|AACV01002820.1| Oryza sativa (japonica cultivar-group) c... 149 4e-033
gb|AACV01011125.1| Oryza sativa (japonica cultivar-group) c... 149 4e-033
ref|XM_463559.1| Oryza sativa (japonica cultivar-group), p... 149 4e-033
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 149 4e-033
dbj|AP003379.2| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
dbj|AP003346.4| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
gb|CF294135.1|CF294135 30DGS--03-I23.g1 Rice leaf plasmid c... 133 2e-028
gb|CF297258.1|CF297258 30DGS--07-P17.b1 Rice leaf plasmid c... 133 2e-028
dbj|AB003328.1| Oryza sativa (japonica cultivar-group) mRNA... 133 2e-028
dbj|AK067641.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-028
dbj|AK104921.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-028
gb|AY332476.1| Oryza sativa (japonica cultivar-group) MADS ... 133 2e-028
gb|AC098695.2| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
gb|AY551915.1| Oryza sativa (japonica cultivar-group) MADS-... 133 2e-028
gb|AACV01005781.1| Oryza sativa (japonica cultivar-group) c... 133 2e-028
ref|XM_468584.1| Oryza sativa (japonica cultivar-group), p... 133 2e-028
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 133 2e-028
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
gb|AQ578837.1|AQ578837 nbxb0093F09f CUGI Rice BAC Library O... 123 2e-025
dbj|AK100263.1| Oryza sativa (japonica cultivar-group) cDNA... 123 2e-025
gb|U78891.2|OSU78891 Oryza sativa MADS box protein (MADS7) ... 123 2e-025
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
gb|AY551921.1| Oryza sativa (japonica cultivar-group) MADS-... 123 2e-025
gb|AACV01018907.1| Oryza sativa (japonica cultivar-group) c... 123 2e-025
ref|XM_483487.1| Oryza sativa (japonica cultivar-group), mRNA 123 2e-025
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 123 2e-025
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-025
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-025
emb|Y15008.1|OSY15008 Oryza sativa mRNA for M79 protein 123 2e-025
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 123 2e-025
gb|D46933.1|D46933 RICS11905A Rice green shoot Oryza sativa... 119 4e-024
gb|D22380.1|D22380 RICC10934A Rice callus Oryza sativa (jap... 117 1e-023
gb|BP185086.1|BP185086 BP185086 pNS rice panicle cDNA, flow... 117 1e-023
gb|U78782.1|OSU78782 Oryza sativa MADS box protein (OsMADS6... 117 1e-023
dbj|AK069103.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
dbj|AP004178.3| Oryza sativa (japonica cultivar-group) geno... 117 1e-023
gb|AACV01005162.1| Oryza sativa (japonica cultivar-group) c... 117 1e-023
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 117 1e-023
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 117 1e-023
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 117 1e-023
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 117 1e-023
gb|AY332477.1| Oryza sativa (japonica cultivar-group) MADS ... 115 6e-023
gb|AU225854.1|AU225854 AU225854 Oryza sativa Koshihikari pi... 111 9e-022
gb|AU068508.1|AU068508 AU068508 Rice callus Oryza sativa (j... 107 1e-020
gb|C75937.1|C75937 C75937 Rice callus Oryza sativa (japonic... 105 6e-020
gb|CF332154.1|CF332154 NACL--08-I21.g1 Rice callus plasmid ... 105 6e-020
dbj|AK069728.1| Oryza sativa (japonica cultivar-group) cDNA... 105 6e-020
dbj|AK070981.1| Oryza sativa (japonica cultivar-group) cDNA... 105 6e-020
gb|AC105732.3| Oryza sativa (japonica cultivar-group) chrom... 105 6e-020
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 105 6e-020
gb|AACV01006102.1| Oryza sativa (japonica cultivar-group) c... 105 6e-020
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 105 6e-020
gb|CV720574.1|CV720574 YBH--01-B14.b1 Rice before heading y... 101 9e-019
gb|CV721367.1|CV721367 YBH--03-N20.b1 Rice before heading y... 101 9e-019
gb|U78892.1|OSU78892 Oryza sativa MADS box protein (OsMADS8... 101 9e-019
dbj|AK072867.1| Oryza sativa (japonica cultivar-group) cDNA... 101 9e-019
gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) c... 101 9e-019
gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromo... 101 9e-019
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 101 9e-019
dbj|AB003324.1| Oryza sativa (japonica cultivar-group) mRNA... 92 8e-016
dbj|AK100227.1| Oryza sativa (japonica cultivar-group) cDNA... 92 8e-016
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 92 8e-016
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 92 8e-016
gb|AY551917.1| Oryza sativa (japonica cultivar-group) MADS-... 92 8e-016
gb|AY551922.1| Oryza sativa (japonica cultivar-group) MADS-... 92 8e-016
gb|AY551926.1| Oryza sativa (japonica cultivar-group) MADS-... 92 8e-016
gb|AACV01007934.1| Oryza sativa (japonica cultivar-group) c... 92 8e-016
ref|XM_469790.1| Oryza sativa (japonica cultivar-group), mRNA 92 8e-016
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 92 8e-016
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 92 8e-016
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 92 8e-016
dbj|AK111776.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
dbj|AP005545.3| Oryza sativa (japonica cultivar-group) geno... 90 3e-015
gb|AACV01013335.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 90 3e-015
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 90 3e-015
gb|AQ271415.1|AQ271415 nbxb0025B08f CUGI Rice BAC Library O... 86 5e-014
gb|AQ330858.1|AQ330858 nbxb0048E10f CUGI Rice BAC Library O... 86 5e-014
gb|AQ575051.1|AQ575051 nbxb0086L17r CUGI Rice BAC Library O... 86 5e-014
gb|AU225127.1|AU225127 AU225127 Oryza sativa Koshihikari pi... 86 5e-014
gb|U78890.1|OSU78890 Oryza sativa MADS box protein (OsMADS5... 86 5e-014
dbj|AK064184.1| Oryza sativa (japonica cultivar-group) cDNA... 86 5e-014
gb|AACV01013077.1| Oryza sativa (japonica cultivar-group) c... 86 5e-014
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 86 5e-014
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 86 5e-014
ref|NM_185637.2| Oryza sativa (japonica cultivar-group), mRNA 86 5e-014
gb|CV721444.1|CV721444 YBH--04-C11.b1 Rice before heading y... 82 8e-013
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 80 3e-012
dbj|AP006720.1| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
dbj|AP004049.2| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|AACV01003159.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
gb|AACV01018778.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
ref|XM_463804.1| Oryza sativa (japonica cultivar-group), mRNA 80 3e-012
ref|XM_483124.1| Oryza sativa (japonica cultivar-group), mRNA 80 3e-012
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 80 3e-012
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|CF315263.1|CF315263 HD--04-B23.b1 OsHDAC1-overexpressing... 78 1e-011
dbj|AK069331.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
gb|AY332478.1| Oryza sativa (japonica cultivar-group) MADS ... 76 5e-011
dbj|AK121171.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
gb|AY551916.1| Oryza sativa (japonica cultivar-group) MADS-... 76 5e-011
ref|XM_469789.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-011
gb|D15657.2|D15657 RICC1032A Rice callus Oryza sativa (japo... 74 2e-010
gb|AY177701.1| Oryza sativa (japonica cultivar-group) trans... 74 2e-010
ref|XM_483489.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-010
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 72 8e-010
dbj|AP003951.3| Oryza sativa (japonica cultivar-group) geno... 72 8e-010
gb|AACV01014097.1| Oryza sativa (japonica cultivar-group) c... 72 8e-010
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 72 8e-010
gb|C74564.1|C74564 C74564 Rice panicle shorter than 3cm Ory... 70 3e-009
dbj|AB003325.1| Oryza sativa (japonica cultivar-group) mRNA... 70 3e-009
dbj|AP003759.2| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
dbj|AK072683.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
gb|AY551920.1| Oryza sativa (japonica cultivar-group) MADS-... 70 3e-009
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AACV01015031.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
ref|XM_476392.1| Oryza sativa (japonica cultivar-group), mRNA 70 3e-009
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 70 3e-009
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|CB652556.1|CB652556 OSJNEc02K24.f OSJNEc Oryza sativa (j... 68 1e-008
gb|CF306783.1|CF306783 HDA1--04-N10.g1 OsHDAC1-overexpressi... 68 1e-008
gb|CF322477.1|CF322477 HDN--01-C18.g1 OsHDAC1-overexpressin... 68 1e-008
gb|CF325684.1|CF325684 JMT1--03-O10.g1 AtJMT-overexpressing... 68 1e-008
dbj|AB003322.1| Oryza sativa (japonica cultivar-group) mRNA... 68 1e-008
dbj|AK064704.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AK070121.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AP004159.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
dbj|AP005175.4| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
gb|AACV01005456.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|AACV01016746.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_467915.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
ref|XM_479092.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 68 1e-008
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
dbj|AB107957.1| Oryza sativa (japonica cultivar-group) RMD1... 68 1e-008
emb|AJ011675.1|OSA011675 Oryza sativa mRNA for MADS-box pro... 68 1e-008
gb|AU078632.1|AU078632 AU078632 Rice callus Oryza sativa (j... 66 5e-008
gb|AACV01009916.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_472756.1| Oryza sativa (japonica cultivar-group), p... 66 5e-008
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 66 5e-008
emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromoso... 66 5e-008
emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromoso... 66 5e-008
gb|C72923.1|C72923 C72923 Rice panicle at flowering stage O... 62 8e-007
gb|CF336890.1|CF336890 JMT--07-B20.b1 AtJMT-overexpressing ... 60 3e-006
gb|AC090974.1|AC090974 Oryza sativa (japonica cultivar-grou... 60 3e-006
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 60 3e-006
dbj|AP003908.1| Oryza sativa (japonica cultivar-group) chro... 60 3e-006
gb|AY177694.1| Oryza sativa (japonica cultivar-group) trans... 60 3e-006
dbj|AK070894.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 60 3e-006
gb|AY250075.1| Oryza sativa (japonica cultivar-group) MADS2... 60 3e-006
gb|AY345220.1| Oryza sativa (japonica cultivar-group) trans... 60 3e-006
gb|AY551924.1| Oryza sativa (japonica cultivar-group) MADS-... 60 3e-006
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 60 3e-006
gb|AACV01002803.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|AACV01018525.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|XM_463532.1| Oryza sativa (japonica cultivar-group), p... 60 3e-006
ref|XM_482530.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
dbj|AP003868.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP003561.2| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CV731070.1|CV731070 FLO--04-O21.g1 Rice flower lambda ph... 58 1e-005
dbj|AB003327.1| Oryza sativa (japonica cultivar-group) mRNA... 58 1e-005
dbj|AK066160.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AACV01002956.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 58 1e-005
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|C26796.1|C26796 C26796 Rice callus cDNA Oryza sativa (ja... 56 5e-005
emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC O... 56 5e-005
gb|AACV01024966.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|D47001.1|D47001 RICS12021A Rice green shoot Oryza sativa... 54 2e-004
gb|C98962.1|C98962 C98962 Rice panicle at flowering stage O... 52 7e-004
dbj|AK100233.1| Oryza sativa (japonica cultivar-group) cDNA... 52 7e-004
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|AACV01014099.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 52 7e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|D47632.1|D47632 RICS13245A Rice green shoot Oryza sativa... 50 0.003
gb|AU068577.1|AU068577 AU068577 Rice callus Oryza sativa (j... 50 0.003
gb|CF322128.1|CF322128 HD--13-J23.b1 OsHDAC1-overexpressing... 50 0.003
gb|AY174093.1| Oryza sativa (japonica cultivar-group) MADS3... 50 0.003
gb|AY345221.1| Oryza sativa (japonica cultivar-group) trans... 50 0.003
gb|AY345222.1| Oryza sativa (japonica cultivar-group) trans... 50 0.003
gb|AC125471.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 50 0.003
dbj|AP003633.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AACV01006007.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01014754.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|NT_079911.2| Oryza sativa (japonica cultivar-group) 50 0.003
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
emb|AJ536158.1|OSA536158 Oryza sativa (japonica cultivar-gr... 50 0.003
gb|CZ168542.1|CZ168542 UCDRGT395_5.1 UCD RGT Rice Insertion... 48 0.011
gb|CA755986.1|CA755986 BR030032000_PLATE_E04_29_033.ab1 OA ... 48 0.011
dbj|AP004766.1| Oryza sativa (japonica cultivar-group) chro... 48 0.011
dbj|AK109522.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.011
gb|AY177696.1| Oryza sativa (japonica cultivar-group) trans... 48 0.011
gb|AY177697.1| Oryza sativa (japonica cultivar-group) trans... 48 0.011
gb|AY551923.1| Oryza sativa (japonica cultivar-group) MADS-... 48 0.011
dbj|AP004836.2| Oryza sativa (japonica cultivar-group) geno... 48 0.011
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|AACV01003433.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
gb|AACV01004772.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
ref|XM_464283.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.011
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 48 0.011
dbj|AP006161.3| Oryza sativa (japonica cultivar-group) geno... 48 0.011
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 48 0.011
gb|AQ573739.1|AQ573739 nbxb0084D10r CUGI Rice BAC Library O... 46 0.045
gb|AQ687916.1|AQ687916 nbxb0075P06r CUGI Rice BAC Library O... 46 0.045
gb|AU095354.1|AU095354 AU095354 Rice cDNA from immature lea... 46 0.045
dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA... 46 0.045
dbj|AP003910.1| Oryza sativa (japonica cultivar-group) chro... 46 0.045
dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.045
dbj|AP004566.3| Oryza sativa (japonica cultivar-group) geno... 46 0.045
gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-... 46 0.045
gb|AACV01017125.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.045
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
dbj|AG212114.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.18
dbj|AP004616.1| Oryza sativa (japonica cultivar-group) chro... 44 0.18
dbj|AK062657.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP005646.2| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AACV01013366.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01013369.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01013861.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01022467.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AC134044.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
>dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A03, full
insert sequence
Length = 1214
Score = 430 bits (217), Expect = e-118
Identities = 480/567 (84%), Gaps = 3/567 (0%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctctccctcctcaatcttggtcctgagg 601
||||| ||||| ||||||||||||||||| ||||| |||| |||||||||| ||||||
Sbjct: 631 gaccgggccaccgtcacctgctgcagctgctgctcctcctcagcaatcttggttctgagg 572
Query: 602 gtcatgtggtcattctgaagctcagtctcccttttggccatgtaactgatctccgcagcc 661
||||| ||| |||||||||||| |||||||||||||||||||| ||||||| | ||||
Sbjct: 571 tccatgttgtcgttctgaagctcaatctcccttttggccatgtaattgatctctgaagcc 512
Query: 662 agcagctcactcttcctggccctgatcttagagatgcctttctcaaggcggctctccagc 721
||||| ||| |||||||||| |||||||| || ||||||||||| |||||||| || ||
Sbjct: 511 agcagttcattcttcctggctctgatctttgaaatgcctttctccaggcggctttcaagt 452
Query: 722 tgcttcagctccttgagtgacaggtttcccacggagtcaccaaccaagtgcctgttagtg 781
|||||||||||||| ||||||||||| | ||| || ||||||| |||| |||| |||
Sbjct: 451 tgcttcagctccttcagtgacaggttgctcacattatcgccaaccaggtgcttgttggtg 392
Query: 782 ttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtagaattgctgg 841
|||||||||||||| ||||||| ||||||||| || || || ||||||||| |||||||
Sbjct: 391 ttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagtattgctga 332
Query: 842 gcattgtgctctaggagcgggggcccagaggaagagccaacggtgtgtgccttcttgtac 901
|||||| ||||| ||| || | ||||| | |||||| | || ||||||||||||
Sbjct: 331 gcattgacctctatgagaggtgcaccagaagttgagccacaagcatgcgccttcttgtac 272
Query: 902 ctctcaacagtagccttgaca---ctgttgttggcatactcgtagaggcgaccacggcta 958
|| |||| |||||||| ||| ||||||||| |||||||||||||| ||||||||
Sbjct: 271 ctgtcaattgtagccttcacattgttgttgttggagtactcgtagaggcggccacggctg 212
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 211 gagaagacgatgagagccacctcggcatcgcagaggacggagagctcatacgccttcttg 152
Query: 1019 aggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcctc 1078
|| || || |||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 151 agaagtccgttgcggcgcttgcagaaggtcacctggcggcttgtcgtgttctcgatcctc 92
Query: 1079 ttgatctcaatccttcctctacccatg 1105
|||||||||||||| || || ||||||
Sbjct: 91 ttgatctcaatcctgcccctccccatg 65
>gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS protein (MAF1) mRNA,
complete cds
Length = 1010
Score = 430 bits (217), Expect = e-118
Identities = 480/567 (84%), Gaps = 3/567 (0%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctctccctcctcaatcttggtcctgagg 601
||||| ||||| ||||||||||||||||| ||||| |||| |||||||||| ||||||
Sbjct: 604 gaccgggccaccgtcacctgctgcagctgctgctcctcctcagcaatcttggttctgagg 545
Query: 602 gtcatgtggtcattctgaagctcagtctcccttttggccatgtaactgatctccgcagcc 661
||||| ||| |||||||||||| |||||||||||||||||||| ||||||| | ||||
Sbjct: 544 tccatgttgtcgttctgaagctcaatctcccttttggccatgtaattgatctctgaagcc 485
Query: 662 agcagctcactcttcctggccctgatcttagagatgcctttctcaaggcggctctccagc 721
||||| ||| |||||||||| |||||||| || ||||||||||| |||||||| || ||
Sbjct: 484 agcagttcattcttcctggctctgatctttgaaatgcctttctccaggcggctttcaagt 425
Query: 722 tgcttcagctccttgagtgacaggtttcccacggagtcaccaaccaagtgcctgttagtg 781
|||||||||||||| ||||||||||| | ||| || ||||||| |||| |||| |||
Sbjct: 424 tgcttcagctccttcagtgacaggttgctcacattatcgccaaccaggtgcttgttggtg 365
Query: 782 ttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtagaattgctgg 841
|||||||||||||| ||||||| ||||||||| || || || ||||||||| |||||||
Sbjct: 364 ttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagtattgctga 305
Query: 842 gcattgtgctctaggagcgggggcccagaggaagagccaacggtgtgtgccttcttgtac 901
|||||| ||||| ||| || | ||||| | |||||| | || ||||||||||||
Sbjct: 304 gcattgacctctatgagaggtgcaccagaagttgagccacaagcatgcgccttcttgtac 245
Query: 902 ctctcaacagtagccttgaca---ctgttgttggcatactcgtagaggcgaccacggcta 958
|| |||| |||||||| ||| ||||||||| |||||||||||||| ||||||||
Sbjct: 244 ctgtcaattgtagccttcacattgttgttgttggagtactcgtagaggcggccacggctg 185
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 184 gagaagacgatgagagccacctcggcatcgcagaggacggagagctcatacgccttcttg 125
Query: 1019 aggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcctc 1078
|| || || |||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 124 agaagtccgttgcggcgcttgcagaaggtcacctggcggcttgtcgtgttctcgatcctc 65
Query: 1079 ttgatctcaatccttcctctacccatg 1105
|||||||||||||| || || ||||||
Sbjct: 64 ttgatctcaatcctgcccctccccatg 38
>gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS206
mRNA, complete cds
Length = 914
Score = 321 bits (162), Expect = 5e-085
Identities = 368/436 (84%), Gaps = 3/436 (0%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 582 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 523
Query: 733 cttgagtgacaggtttcccacggagtcaccaaccaagtgcctgttagtgttttgcagcat 792
||| ||||||||||| | ||| || ||||||| |||| |||| ||||||||||||||
Sbjct: 522 cttcagtgacaggttgctcacattatcgccaaccaggtgcttgttggtgttttgcagcat 463
Query: 793 ctggatctggttgcgcagttttgctgattcttgctggtagaattgctgggcattgtgctc 852
||| ||||||| ||||||||| || || || ||||||||| ||||||| |||||| |||
Sbjct: 462 ctgaatctggtggcgcagtttggcagactcctgctggtagtattgctgagcattgacctc 403
Query: 853 taggagcgggggcccagaggaagagccaacggtgtgtgccttcttgtacctctcaacagt 912
|| ||| || | ||||| | |||||| | || |||||||||||||| |||| ||
Sbjct: 402 tatgagaggtgcaccagaagttgagccacaagcatgcgccttcttgtacctgtcaattgt 343
Query: 913 agccttgacactg---ttgttggcatactcgtagaggcgaccacggctagagaagacgat 969
|||||| |||||| ||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 342 agccttcacactgctgttgttggagtactcgtagaggcggccacggctggagaagacgat 283
Query: 970 gagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttgaggagcccatt 1029
||| |||||||| || |||||||||||||||||||| |||||||||||||| || || ||
Sbjct: 282 gagagccacctcggcatcgcagaggacggagagctcatacgccttcttgagaagtccgtt 223
Query: 1030 gcggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaat 1089
|||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct: 222 gcggcgcttgcagaaggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaat 163
Query: 1090 ccttcctctacccatg 1105
||| || || ||||||
Sbjct: 162 cctgcccctccccatg 147
>dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D02, full
insert sequence
Length = 1511
Score = 234 bits (118), Expect = 9e-059
Identities = 178/198 (89%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
||||||||||||||||||||| || | || |||||||||||||| ||||||||||||||
Sbjct: 562 tgccttcttgtacctctcaacggtggatttcacactgttgttggcgtactcgtagaggcg 503
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgta 1008
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 502 gccgcggctggagaagacgatgagggcaacctcggcgtcgcagaggacggacagctcgta 443
Query: 1009 cgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgtt 1068
||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 442 cgccttcttcaggaggccattgcggcgcttgcagaaggtcacctgccggttcgtcgtgtt 383
Query: 1069 ctcgatcctcttgatctc 1086
|||||||| ||| |||||
Sbjct: 382 ctcgatccgctttatctc 365
>gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-like protein RMADS222
mRNA, complete cds
Length = 1051
Score = 234 bits (118), Expect = 9e-059
Identities = 178/198 (89%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
||||||||||||||||||||| || | || |||||||||||||| ||||||||||||||
Sbjct: 335 tgccttcttgtacctctcaacggtggatttcacactgttgttggcgtactcgtagaggcg 276
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgta 1008
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 275 gccgcggctggagaagacgatgagggcaacctcggcgtcgcagaggacggacagctcgta 216
Query: 1009 cgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgtt 1068
||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 215 cgccttcttcaggaggccattgcggcgcttgcagaaggtcacctgccggttcgtcgtgtt 156
Query: 1069 ctcgatcctcttgatctc 1086
|||||||| ||| |||||
Sbjct: 155 ctcgatccgctttatctc 138
>ref|NM_188300.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 744
Score = 234 bits (118), Expect = 9e-059
Identities = 178/198 (89%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
||||||||||||||||||||| || | || |||||||||||||| ||||||||||||||
Sbjct: 216 tgccttcttgtacctctcaacggtggatttcacactgttgttggcgtactcgtagaggcg 157
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgta 1008
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 156 gccgcggctggagaagacgatgagggcaacctcggcgtcgcagaggacggacagctcgta 97
Query: 1009 cgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgtt 1068
||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 96 cgccttcttcaggaggccattgcggcgcttgcagaaggtcacctgccggttcgtcgtgtt 37
Query: 1069 ctcgatcctcttgatctc 1086
|||||||| ||| |||||
Sbjct: 36 ctcgatccgctttatctc 19
>emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-group) chromosome 12 clone
OSJNBa0021D06, *** SEQUENCING IN PROGRESS ***
Length = 139671
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 72145 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 72086
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 72085 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 72026
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 72025 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 71966
Query: 1104 tg 1105
||
Sbjct: 71965 tg 71964
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 74779 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 74720
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 74719 cttcagtgacaggtt 74705
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 74522 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 74463
Query: 834 attgct 839
||||||
Sbjct: 74462 attgct 74457
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 75044 cccttttggccatgtaattgatctctgaagccagcag 75008
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 75498 gaccgggccaccgtcacctgctgcagctgctgctc 75464
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 139684
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 67533 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 67592
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 67593 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 67652
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 67653 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 67712
Query: 1104 tg 1105
||
Sbjct: 67713 tg 67714
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 64899 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 64958
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 64959 cttcagtgacaggtt 64973
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 65156 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 65215
Query: 834 attgct 839
||||||
Sbjct: 65216 attgct 65221
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 64634 cccttttggccatgtaattgatctctgaagccagcag 64670
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 64180 gaccgggccaccgtcacctgctgcagctgctgctc 64214
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 117585
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 12783 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 12842
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 12843 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 12902
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 12903 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 12962
Query: 1104 tg 1105
||
Sbjct: 12963 tg 12964
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 10149 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 10208
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 10209 cttcagtgacaggtt 10223
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 10406 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 10465
Query: 834 attgct 839
||||||
Sbjct: 10466 attgct 10471
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 9884 cccttttggccatgtaattgatctctgaagccagcag 9920
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 9430 gaccgggccaccgtcacctgctgcagctgctgctc 9464
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 160556
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 138157 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 138098
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 138097 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 138038
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 138037 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 137978
Query: 1104 tg 1105
||
Sbjct: 137977 tg 137976
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 140791 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 140732
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 140731 cttcagtgacaggtt 140717
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 140534 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 140475
Query: 834 attgct 839
||||||
Sbjct: 140474 attgct 140469
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 141056 cccttttggccatgtaattgatctctgaagccagcag 141020
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 141510 gaccgggccaccgtcacctgctgcagctgctgctc 141476
>ref|NT_107159.1| Oryza sativa (japonica cultivar-group)
Length = 480567
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 261386 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 261327
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 261326 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 261267
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 261266 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 261207
Query: 1104 tg 1105
||
Sbjct: 261206 tg 261205
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 264020 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 263961
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 263960 cttcagtgacaggtt 263946
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 263763 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 263704
Query: 834 attgct 839
||||||
Sbjct: 263703 attgct 263698
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 264285 cccttttggccatgtaattgatctctgaagccagcag 264249
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 264739 gaccgggccaccgtcacctgctgcagctgctgctc 264705
>gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024177, whole
genome shotgun sequence
Length = 23681
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 21628 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 21687
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 21688 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 21747
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 21748 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 21807
Query: 1104 tg 1105
||
Sbjct: 21808 tg 21809
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 18994 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 19053
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 19054 cttcagtgacaggtt 19068
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 19251 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 19310
Query: 834 attgct 839
||||||
Sbjct: 19311 attgct 19316
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 18729 cccttttggccatgtaattgatctctgaagccagcag 18765
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 18275 gaccgggccaccgtcacctgctgcagctgctgctc 18309
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 5314696 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5314637
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 5314636 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5314577
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 5314576 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 5314517
Query: 1104 tg 1105
||
Sbjct: 5314516 tg 5314515
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 5317330 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 5317271
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 5317270 cttcagtgacaggtt 5317256
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 5317073 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 5317014
Query: 834 attgct 839
||||||
Sbjct: 5317013 attgct 5317008
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 5317595 cccttttggccatgtaattgatctctgaagccagcag 5317559
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 5318049 gaccgggccaccgtcacctgctgcagctgctgctc 5318015
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 5314696 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5314637
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 5314636 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5314577
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 5314576 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 5314517
Query: 1104 tg 1105
||
Sbjct: 5314516 tg 5314515
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 5317330 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 5317271
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 5317270 cttcagtgacaggtt 5317256
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 5317073 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 5317014
Query: 834 attgct 839
||||||
Sbjct: 5317013 attgct 5317008
Score = 60.0 bits (30), Expect = 3e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||||| ||| || || ||||||||||||||| || ||||| |||||||||
Sbjct: 15774436 gagaagacgatggcggcgacgtcgacgtcgcagaggacggcgatctcgtgggccttcttg 15774495
Query: 1019 aggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcc 1076
|| ||||| || |||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 15774496 agcagccccggccgccgcttggagaaggtcacctgccggctcacctcgttctcgatcc 15774553
Score = 56.0 bits (28), Expect = 5e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1031 cggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatc 1090
||||||||| ||||||| ||||| || | ||| |||||||||||||||||||||||||
Sbjct: 15373553 cggcgcttggagaaggtcacctggtggttggtgaagttctcgatcctcttgatctcaatc 15373612
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 5317595 cccttttggccatgtaattgatctctgaagccagcag 5317559
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 5318049 gaccgggccaccgtcacctgctgcagctgctgctc 5318015
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 5585352 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5585293
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 5585292 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5585233
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 5585232 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 5585173
Query: 1104 tg 1105
||
Sbjct: 5585172 tg 5585171
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 5587986 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 5587927
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 5587926 cttcagtgacaggtt 5587912
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 5587729 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 5587670
Query: 834 attgct 839
||||||
Sbjct: 5587669 attgct 5587664
Score = 60.0 bits (30), Expect = 3e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||||| ||| || || ||||||||||||||| || ||||| |||||||||
Sbjct: 19156001 gagaagacgatggcggcgacgtcgacgtcgcagaggacggcgatctcgtgggccttcttg 19156060
Query: 1019 aggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcc 1076
|| ||||| || |||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 19156061 agcagccccggccgccgcttggagaaggtcacctgccggctcacctcgttctcgatcc 19156118
Score = 56.0 bits (28), Expect = 5e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1031 cggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatc 1090
||||||||| ||||||| ||||| || | ||| |||||||||||||||||||||||||
Sbjct: 18669982 cggcgcttggagaaggtcacctggtggttggtgaagttctcgatcctcttgatctcaatc 18670041
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 5588251 cccttttggccatgtaattgatctctgaagccagcag 5588215
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 5588705 gaccgggccaccgtcacctgctgcagctgctgctc 5588671
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
Sbjct: 5585341 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5585282
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 5585281 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5585222
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
|||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||
Sbjct: 5585221 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccca 5585162
Query: 1104 tg 1105
||
Sbjct: 5585161 tg 5585160
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 673 cttcctggccctgatcttagagatgcctttctcaaggcggctctccagctgcttcagctc 732
||||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||
Sbjct: 5587975 cttcctggctctgatctttgaaatgcctttctccaggcggctttcaagttgcttcagctc 5587916
Query: 733 cttgagtgacaggtt 747
||| |||||||||||
Sbjct: 5587915 cttcagtgacaggtt 5587901
Score = 67.9 bits (34), Expect = 1e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 774 tgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttgctggtaga 833
|||| ||||||||||||||||| ||||||| ||||||||| || || || |||||||||
Sbjct: 5587718 tgttggtgttttgcagcatctgaatctggtggcgcagtttggcagactcctgctggtagt 5587659
Query: 834 attgct 839
||||||
Sbjct: 5587658 attgct 5587653
Score = 60.0 bits (30), Expect = 3e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||||| ||| || || ||||||||||||||| || ||||| |||||||||
Sbjct: 19082228 gagaagacgatggcggcgacgtcgacgtcgcagaggacggcgatctcgtgggccttcttg 19082287
Query: 1019 aggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcc 1076
|| ||||| || |||||| ||||||| |||||||||||| | |||||||||||
Sbjct: 19082288 agcagccccggccgccgcttggagaaggtcacctgccggctcacctcgttctcgatcc 19082345
Score = 56.0 bits (28), Expect = 5e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1031 cggcgcttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatc 1090
||||||||| ||||||| ||||| || | ||| |||||||||||||||||||||||||
Sbjct: 18596208 cggcgcttggagaaggtcacctggtggttggtgaagttctcgatcctcttgatctcaatc 18596267
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 cccttttggccatgtaactgatctccgcagccagcag 666
||||||||||||||||| ||||||| | |||||||||
Sbjct: 5588240 cccttttggccatgtaattgatctctgaagccagcag 5588204
Score = 46.1 bits (23), Expect = 0.045
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 542 gaccgtgccacggtcacctgctgcagctgttgctc 576
||||| ||||| ||||||||||||||||| |||||
Sbjct: 5588694 gaccgggccaccgtcacctgctgcagctgctgctc 5588660
>gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000383, whole
genome shotgun sequence
Length = 32294
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 20516 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 20575
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 20576 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 20635
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 20636 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 20679
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 5564849 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5564908
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 5564909 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5564968
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 5564969 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 5565012
Score = 149 bits (75), Expect = 4e-033
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
|||| |||||||| || ||||| |||||||||||||| || | ||||||||||||||| |
Sbjct: 38575959 actcatagaggcgtcctcggctggagaagacgatgagtgcgatctcagcgtcgcagagta 38575900
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
|| ||||||||| |||||||| || |||||||| | ||||||||||||||| ||||| |
Sbjct: 38575899 tggcgagctcgtaggccttcttcagcagcccattcctgcgcttgcagaaggtcacctgac 38575840
Query: 1056 ggctcgtgttgttctcgatcctcttgatctcaatc 1090
||||||| ||||||||||| ||||| |||||||||
Sbjct: 38575839 ggctcgtcttgttctcgattctctttatctcaatc 38575805
Score = 60.0 bits (30), Expect = 3e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 977 acctcagcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgc 1036
||||| |||||||| |||||| || |||| ||||||||||||| ||| | | ||||
Sbjct: 38397619 acctcggcgtcgcacaggacgctgatctcgcgggccttcttgaggatcccgctcctgcgc 38397678
Query: 1037 ttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||| ||||||| ||||| ||| | ||| |||||||||||||||||||||
Sbjct: 38397679 ttggagaaggtcacctggcggttggtggagttctcgatcctcttgatctc 38397728
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||| ||| |||||||| |||||||||| | || ||||||| |||||||||||
Sbjct: 40417687 gagaagacgaggagcgccacctccacgtcgcagagcagggcgagctcgaacgccttcttg 40417628
Query: 1019 a 1019
|
Sbjct: 40417627 a 40417627
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 5564689 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5564748
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 5564749 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5564808
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 5564809 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 5564852
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489A05
Length = 158815
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 32540 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 32599
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 32600 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 32659
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 32660 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 32703
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1015E06
Length = 164583
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 163907 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 163966
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 163967 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 164026
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 164027 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 164070
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 5556030 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5556089
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 5556090 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5556149
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 5556150 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 5556193
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 5556030 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5556089
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 5556090 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5556149
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 5556150 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 5556193
Score = 149 bits (75), Expect = 4e-033
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
|||| |||||||| || ||||| |||||||||||||| || | ||||||||||||||| |
Sbjct: 37964176 actcatagaggcgtcctcggctggagaagacgatgagtgcgatctcagcgtcgcagagta 37964117
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
|| ||||||||| |||||||| || |||||||| | ||||||||||||||| ||||| |
Sbjct: 37964116 tggcgagctcgtaggccttcttcagcagcccattcctgcgcttgcagaaggtcacctgac 37964057
Query: 1056 ggctcgtgttgttctcgatcctcttgatctcaatc 1090
||||||| ||||||||||| ||||| |||||||||
Sbjct: 37964056 ggctcgtcttgttctcgattctctttatctcaatc 37964022
Score = 60.0 bits (30), Expect = 3e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 977 acctcagcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgc 1036
||||| |||||||| |||||| || |||| ||||||||||||| ||| | | ||||
Sbjct: 37788433 acctcggcgtcgcacaggacgctgatctcgcgggccttcttgaggatcccgctcctgcgc 37788492
Query: 1037 ttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||| ||||||| ||||| ||| | ||| |||||||||||||||||||||
Sbjct: 37788493 ttggagaaggtcacctggcggttggtggagttctcgatcctcttgatctc 37788542
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||| ||| |||||||| |||||||||| | || ||||||| |||||||||||
Sbjct: 39821647 gagaagacgaggagcgccacctccacgtcgcagagcagggcgagctcgaacgccttcttg 39821588
Query: 1019 a 1019
|
Sbjct: 39821587 a 39821587
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 206 bits (104), Expect = 2e-050
Identities = 149/164 (90%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 5567067 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5567126
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 5567127 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5567186
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||||| ||||||||| |||| |||||||||||| ||| |||||
Sbjct: 5567187 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctc 5567230
Score = 149 bits (75), Expect = 4e-033
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
|||| |||||||| || ||||| |||||||||||||| || | ||||||||||||||| |
Sbjct: 38495289 actcatagaggcgtcctcggctggagaagacgatgagtgcgatctcagcgtcgcagagta 38495230
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
|| ||||||||| |||||||| || |||||||| | ||||||||||||||| ||||| |
Sbjct: 38495229 tggcgagctcgtaggccttcttcagcagcccattcctgcgcttgcagaaggtcacctgac 38495170
Query: 1056 ggctcgtgttgttctcgatcctcttgatctcaatc 1090
||||||| ||||||||||| ||||| |||||||||
Sbjct: 38495169 ggctcgtcttgttctcgattctctttatctcaatc 38495135
Score = 60.0 bits (30), Expect = 3e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 977 acctcagcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgc 1036
||||| |||||||| |||||| || |||| ||||||||||||| ||| | | ||||
Sbjct: 38316949 acctcggcgtcgcacaggacgctgatctcgcgggccttcttgaggatcccgctcctgcgc 38317008
Query: 1037 ttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
||| ||||||| ||||| ||| | ||| |||||||||||||||||||||
Sbjct: 38317009 ttggagaaggtcacctggcggttggtggagttctcgatcctcttgatctc 38317058
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 959 gagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgccttcttg 1018
|||||||||| ||| |||||||| |||||||||| | || ||||||| |||||||||||
Sbjct: 40337017 gagaagacgaggagcgccacctccacgtcgcagagcagggcgagctcgaacgccttcttg 40336958
Query: 1019 a 1019
|
Sbjct: 40336957 a 40336957
>dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027E19, full
insert sequence
Length = 1071
Score = 188 bits (95), Expect = 5e-045
Identities = 176/203 (86%)
Strand = Plus / Minus
Query: 893 ttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcgacca 952
|||||||||||||||| ||| |||| || |||||||||| |||||||||||||| |||
Sbjct: 442 ttcttgtacctctcaatagtttccttcacgctgttgttggagtactcgtagaggcggcca 383
Query: 953 cggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgcc 1012
||||| |||||||||| |||||| ||||| || |||||||| ||||||||||| ||||||
Sbjct: 382 cggctggagaagacgacgagggcgacctcggcatcgcagagcacggagagctcatacgcc 323
Query: 1013 ttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcg 1072
|||||||| ||||| ||||||||||||||||||| || || ||| |||| ||||||||
Sbjct: 322 ttcttgagtagcccgctgcggcgcttgcagaaggtcacttgacggttcgtcgtgttctcg 263
Query: 1073 atcctcttgatctcaatccttcc 1095
|| | ||||||||||||| ||||
Sbjct: 262 atgcgcttgatctcaatctttcc 240
>dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA for transcription factor
OsMADS58, complete cds
Length = 1181
Score = 188 bits (95), Expect = 5e-045
Identities = 176/203 (86%)
Strand = Plus / Minus
Query: 893 ttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcgacca 952
|||||||||||||||| ||| |||| || |||||||||| |||||||||||||| |||
Sbjct: 442 ttcttgtacctctcaatagtttccttcacgctgttgttggagtactcgtagaggcggcca 383
Query: 953 cggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgcc 1012
||||| |||||||||| |||||| ||||| || |||||||| ||||||||||| ||||||
Sbjct: 382 cggctggagaagacgacgagggcgacctcggcatcgcagagcacggagagctcatacgcc 323
Query: 1013 ttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttctcg 1072
|||||||| ||||| ||||||||||||||||||| || || ||| |||| ||||||||
Sbjct: 322 ttcttgagtagcccgctgcggcgcttgcagaaggtcacttgacggttcgtcgtgttctcg 263
Query: 1073 atcctcttgatctcaatccttcc 1095
|| | ||||||||||||| ||||
Sbjct: 262 atgcgcttgatctcaatctttcc 240
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0015G13, complete sequence
Length = 143966
Score = 168 bits (85), Expect = 4e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct: 76958 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 77017
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 77018 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 77077
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcc 1095
||||| || || ||| |||| |||||||||| | ||||||||||||| ||||
Sbjct: 77078 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctttcc 77130
Score = 149 bits (75), Expect = 4e-033
Identities = 117/131 (89%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 53604 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 53663
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| | ||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 53664 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 53723
Query: 1043 aaggtgacctg 1053
|||||||||||
Sbjct: 53724 aaggtgacctg 53734
>gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011127, whole
genome shotgun sequence
Length = 7784
Score = 168 bits (85), Expect = 4e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct: 1134 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 1193
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 1194 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 1253
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcc 1095
||||| || || ||| |||| |||||||||| | ||||||||||||| ||||
Sbjct: 1254 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctttcc 1306
>ref|NT_107224.1| Oryza sativa (japonica cultivar-group)
Length = 975437
Score = 168 bits (85), Expect = 4e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct: 908429 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 908488
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 908489 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 908548
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcc 1095
||||| || || ||| |||| |||||||||| | ||||||||||||| ||||
Sbjct: 908549 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctttcc 908601
Score = 149 bits (75), Expect = 4e-033
Identities = 117/131 (89%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 885075 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 885134
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| | ||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 885135 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 885194
Query: 1043 aaggtgacctg 1053
|||||||||||
Sbjct: 885195 aaggtgacctg 885205
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 168 bits (85), Expect = 4e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct: 6266294 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 6266353
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 6266354 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 6266413
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcc 1095
||||| || || ||| |||| |||||||||| | ||||||||||||| ||||
Sbjct: 6266414 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctttcc 6266466
Score = 149 bits (75), Expect = 4e-033
Identities = 117/131 (89%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 6240832 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6240891
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| | ||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 6240892 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6240951
Query: 1043 aaggtgacctg 1053
|||||||||||
Sbjct: 6240952 aaggtgacctg 6240962
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 168 bits (85), Expect = 4e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct: 6266294 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 6266353
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 6266354 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 6266413
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcc 1095
||||| || || ||| |||| |||||||||| | ||||||||||||| ||||
Sbjct: 6266414 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctttcc 6266466
Score = 149 bits (75), Expect = 4e-033
Identities = 117/131 (89%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 6240832 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6240891
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| | ||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 6240892 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6240951
Query: 1043 aaggtgacctg 1053
|||||||||||
Sbjct: 6240952 aaggtgacctg 6240962
Score = 52.0 bits (26), Expect = 7e-004
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 977 acctcagcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgc 1036
||||| ||||||||||| ||| || |||| ||||||||||| | ||| |||||||
Sbjct: 20269176 acctcggcgtcgcagagcacgccgatctcgcgggccttcttgagtatcccggcgcggcgc 20269117
Query: 1037 ttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
|| |||| || ||||||||| |||| |||||||||||||||||||||
Sbjct: 20269116 ttcgagaacgtcacctgccggttcgtcgagttctcgatcctcttgatctc 20269067
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 168 bits (85), Expect = 4e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct: 6375219 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 6375278
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 6375279 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 6375338
Query: 1043 aaggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcc 1095
||||| || || ||| |||| |||||||||| | ||||||||||||| ||||
Sbjct: 6375339 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctttcc 6375391
Score = 149 bits (75), Expect = 4e-033
Identities = 117/131 (89%)
Strand = Plus / Plus
Query: 923 ctgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctca 982
|||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 6351865 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6351924
Query: 983 gcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcag 1042
|| |||||||| | ||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 6351925 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6351984
Query: 1043 aaggtgacctg 1053
|||||||||||
Sbjct: 6351985 aaggtgacctg 6351995
Score = 52.0 bits (26), Expect = 7e-004
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 977 acctcagcgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgc 1036
||||| ||||||||||| ||| || |||| ||||||||||| | ||| |||||||
Sbjct: 20615489 acctcggcgtcgcagagcacgccgatctcgcgggccttcttgagtatcccggcgcggcgc 20615430
Query: 1037 ttgcagaaggtgacctgccggctcgtgttgttctcgatcctcttgatctc 1086
|| |||| || ||||||||| |||| |||||||||||||||||||||
Sbjct: 20615429 ttcgagaacgtcacctgccggttcgtcgagttctcgatcctcttgatctc 20615380
>gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-J13,
mRNA sequence
Length = 519
Score = 165 bits (83), Expect = 7e-038
Identities = 137/155 (88%)
Strand = Plus / Minus
Query: 893 ttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcgacca 952
|||||||||||||||| ||| |||| || |||||||||| |||||||||||||| |||
Sbjct: 204 ttcttgtacctctcaatagtttccttcacgctgttgttggagtactcgtagaggcggcca 145
Query: 953 cggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtacgcc 1012
||||| |||||||||| |||||| ||||| || |||||||| ||||||||||| ||||||
Sbjct: 144 cggctggagaagacgacgagggcgacctcggcatcgcagagcacggagagctcatacgcc 85
Query: 1013 ttcttgaggagcccattgcggcgcttgcagaaggt 1047
|||||||| ||||| |||||||||||||||||||
Sbjct: 84 ttcttgagtagcccgctgcggcgcttgcagaaggt 50
>gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08M08 3', mRNA sequence
Length = 601
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 383 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 324
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 323 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 264
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 263 ggctcgt 257
>gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14A21 5', mRNA sequence
Length = 764
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 426 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 367
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 366 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 307
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 306 ggctcgt 300
>gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16G22 5', mRNA sequence
Length = 804
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 424 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 365
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 364 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 305
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 304 ggctcgt 298
>gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group) cDNA
clone JMT--01-D10, mRNA sequence
Length = 583
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 469 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 410
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 409 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 350
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 349 ggctcgt 343
>gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group) cDNA
clone JMT--04-C18, mRNA sequence
Length = 565
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 452 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 393
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 392 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 333
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 332 ggctcgt 326
>dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P08, full
insert sequence
Length = 1293
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 449 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 390
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 389 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 330
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 329 ggctcgt 323
>dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057B01, full
insert sequence
Length = 963
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 950 ccacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtac 1009
|||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 186 ccacggctggagaagatgatgagcgccacctccgcgtcgcagagcacggagagctcgtac 127
Query: 1010 gccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttc 1069
|||||||||||||| || |||||||||||| ||||||||||||||||| | | ||||||
Sbjct: 126 gccttcttgaggaggccgttgcggcgcttggagaaggtgacctgccggttgatcttgttc 67
Query: 1070 tcgatcctcttgatctcaatccttcctctacccat 1104
||||| | ||| | ||||| |||||| || |||||
Sbjct: 66 tcgatgcgcttcagctcaacccttcccctccccat 32
>gb|AY345224.1| Oryza sativa (japonica cultivar-group) transcription factor MADS56
mRNA, complete cds
Length = 1311
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 453 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 394
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 393 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 334
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 333 ggctcgt 327
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
sequence
Length = 105841
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 60076 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 60017
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 60016 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 59957
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 59956 ggctcgt 59950
>gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS213
mRNA, complete cds
Length = 1134
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 950 ccacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtac 1009
|||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 292 ccacggctggagaagatgatgagcgccacctccgcgtcgcagagcacggagagctcgtac 233
Query: 1010 gccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttc 1069
|||||||||||||| || |||||||||||| ||||||||||||||||| | | ||||||
Sbjct: 232 gccttcttgaggaggccgttgcggcgcttggagaaggtgacctgccggttgatcttgttc 173
Query: 1070 tcgatcctcttgatctcaatccttcctctacccat 1104
||||| | ||| | ||||| |||||| || |||||
Sbjct: 172 tcgatgcgcttcagctcaacccttcccctccccat 138
>gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214
mRNA, complete cds
Length = 1007
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 286 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 227
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 226 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 167
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 166 ggctcgt 160
>gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010373, whole
genome shotgun sequence
Length = 17272
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 950 ccacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtac 1009
|||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 14912 ccacggctggagaagatgatgagcgccacctccgcgtcgcagagcacggagagctcgtac 14971
Query: 1010 gccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttc 1069
|||||||||||||| || |||||||||||| ||||||||||||||||| | | ||||||
Sbjct: 14972 gccttcttgaggaggccgttgcggcgcttggagaaggtgacctgccggttgatcttgttc 15031
Query: 1070 tcgatcctcttgatctcaatccttcctctacccat 1104
||||| | ||| | ||||| |||||| || |||||
Sbjct: 15032 tcgatgcgcttcagctcaacccttcccctccccat 15066
>gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022000, whole
genome shotgun sequence
Length = 49985
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 11964 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 11905
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 11904 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 11845
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 11844 ggctcgt 11838
>ref|NM_197541.1| Oryza sativa (japonica cultivar-group) putative transcription factor
(OSJNBb0060I05.3), mRNA
Length = 941
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 408 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 349
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 348 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 289
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 288 ggctcgt 282
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 157 bits (79), Expect = 2e-035
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 936 actcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagga 995
||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 2266768 actcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgcagagga 2266709
Query: 996 cggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 2266708 cggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtcacctgcc 2266649
Query: 1056 ggctcgt 1062
|||||||
Sbjct: 2266648 ggctcgt 2266642
>ref|XM_473638.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 750
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 950 ccacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtac 1009
|||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 155 ccacggctggagaagatgatgagcgccacctccgcgtcgcagagcacggagagctcgtac 96
Query: 1010 gccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttc 1069
|||||||||||||| || |||||||||||| ||||||||||||||||| | | ||||||
Sbjct: 95 gccttcttgaggaggccgttgcggcgcttggagaaggtgacctgccggttgatcttgttc 36
Query: 1070 tcgatcctcttgatctcaatccttcctctacccat 1104
||||| | ||| | ||||| |||||| || |||||
Sbjct: 35 tcgatgcgcttcagctcaacccttcccctccccat 1
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 157 bits (79), Expect = 2e-035
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 950 ccacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgtac 1009
|||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 3058467 ccacggctggagaagatgatgagcgccacctccgcgtcgcagagcacggagagctcgtac 3058408
Query: 1010 gccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgttc 1069
|||||||||||||| || |||||||||||| ||||||||||||||||| | | ||||||
Sbjct: 3058407 gccttcttgaggaggccgttgcggcgcttggagaaggtgacctgccggttgatcttgttc 3058348
Query: 1070 tcgatcctcttgatctcaatccttcctctacccat 1104
||||| | ||| | ||||| |||||| || |||||
Sbjct: 3058347 tcgatgcgcttcagctcaacccttcccctccccat 3058313
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,776,291
Number of Sequences: 438736
Number of extensions: 1776291
Number of successful extensions: 18788
Number of sequences better than 0.5: 310
Number of HSP's better than 0.5 without gapping: 350
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14296
Number of HSP's gapped (non-prelim): 4458
length of query: 1221
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1200
effective length of database: 2,791,206,460
effective search space: 3349447752000
effective search space used: 3349447752000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)