BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100234.1| Oryza sativa (japonica cultivar-group) cDNA... 767 0.0
ref|XM_450149.1| Oryza sativa (japonica cultivar-group), mRNA 767 0.0
dbj|AP005561.1| Oryza sativa (japonica cultivar-group) chro... 434 e-119
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 434 e-119
dbj|AP005680.3| Oryza sativa (japonica cultivar-group) geno... 434 e-119
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 434 e-119
dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chro... 184 9e-044
dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA... 184 9e-044
dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA... 184 9e-044
dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA... 184 9e-044
dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA... 184 9e-044
dbj|AP005415.2| Oryza sativa (japonica cultivar-group) geno... 184 9e-044
ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA 184 9e-044
ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA 184 9e-044
ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-... 184 9e-044
ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-... 184 9e-044
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 184 9e-044
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 184 9e-044
dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chro... 170 1e-039
dbj|AP004703.3| Oryza sativa (japonica cultivar-group) geno... 170 1e-039
gb|AACV01018567.1| Oryza sativa (japonica cultivar-group) c... 170 1e-039
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
gb|D49081.2|D49081 RICS15730A Rice green shoot Oryza sativa... 143 3e-031
gb|AACV01019116.1| Oryza sativa (japonica cultivar-group) c... 137 2e-029
gb|CH401232.1| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) c... 125 7e-026
gb|AU174135.1|AU174135 AU174135 Rice shoot Oryza sativa (ja... 96 7e-017
gb|CF325629.1|CF325629 JMT1--03-M02.g1 AtJMT-overexpressing... 96 7e-017
gb|CF326004.1|CF326004 JMT1--04-N12.g1 AtJMT-overexpressing... 96 7e-017
dbj|AK070746.1| Oryza sativa (japonica cultivar-group) cDNA... 96 7e-017
ref|XM_464328.1| Oryza sativa (japonica cultivar-group), mRNA 96 7e-017
dbj|AP004087.3| Oryza sativa (japonica cultivar-group) geno... 88 2e-014
gb|AACV01003485.1| Oryza sativa (japonica cultivar-group) c... 88 2e-014
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 88 2e-014
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 88 2e-014
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 88 2e-014
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 88 2e-014
gb|CB660333.1|CB660333 OSJNEd01P10.f OSJNEd Oryza sativa (j... 86 6e-014
gb|CB660334.1|CB660334 OSJNEd01P10.r OSJNEd Oryza sativa (j... 86 6e-014
gb|CB679593.1|CB679593 OSJNEf03E14.f OSJNEf Oryza sativa (j... 86 6e-014
dbj|AK067949.1| Oryza sativa (japonica cultivar-group) cDNA... 86 6e-014
dbj|AK104860.1| Oryza sativa (japonica cultivar-group) cDNA... 86 6e-014
dbj|AK107198.1| Oryza sativa (japonica cultivar-group) cDNA... 86 6e-014
dbj|AB122055.1| Oryza sativa (japonica cultivar-group) CCR ... 86 6e-014
gb|CB678909.1|CB678909 OSJNEf01L21.f OSJNEf Oryza sativa (j... 82 1e-012
gb|CB647116.1|CB647116 OSJNEb09O10.f OSJNEb Oryza sativa (j... 74 2e-010
dbj|AP005429.3| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
dbj|AP005426.3| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AACV01019998.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 74 2e-010
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|AU064260.2|AU064260 AU064260 Rice panicle (longer than 1... 60 4e-006
gb|D46598.1|D46598 RICS11367A Rice green shoot Oryza sativa... 58 1e-005
dbj|AK102061.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AACV01001938.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01018568.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
dbj|AP003607.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP004367.4| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
ref|NM_192253.1| Oryza sativa (japonica cultivar-group), p... 58 1e-005
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AU094766.1|AU094766 AU094766 Rice panicle shorter than 3... 56 6e-005
gb|AU184158.1|AU184158 AU184158 Rice root Oryza sativa (jap... 56 6e-005
gb|AU197607.1|AU197607 AU197607 Rice root Oryza sativa (jap... 56 6e-005
gb|AACV01020321.1| Oryza sativa (japonica cultivar-group) c... 52 9e-004
gb|AC108762.2| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
gb|D46355.1|D46355 RICS10974A Rice green shoot Oryza sativa... 50 0.003
dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AC098571.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AC120988.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AACV01005630.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01012761.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|XM_468343.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
ref|XM_475941.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 50 0.003
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 50 0.003
dbj|AP005303.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AU163559.1|AU163559 AU163559 Rice panicle at flowering s... 48 0.014
gb|AACV01005631.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
ref|NM_187716.1| Oryza sativa (japonica cultivar-group), p... 48 0.014
dbj|AP003018.2| Oryza sativa (japonica cultivar-group) geno... 46 0.054
dbj|AK107665.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.054
dbj|AP005691.3| Oryza sativa (japonica cultivar-group) geno... 46 0.054
gb|AACV01000729.1| Oryza sativa (japonica cultivar-group) c... 46 0.054
gb|AACV01005633.1| Oryza sativa (japonica cultivar-group) c... 46 0.054
ref|XM_468346.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.054
ref|XM_468350.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.054
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 46 0.054
dbj|AP003020.2| Oryza sativa (japonica cultivar-group) geno... 46 0.054
dbj|AP003631.3| Oryza sativa (japonica cultivar-group) geno... 46 0.054
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.054
dbj|AK107149.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
dbj|AP005467.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP004811.2| Oryza sativa (japonica cultivar-group) geno... 44 0.21
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 44 0.21
gb|AACV01000731.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01013783.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01017275.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
ref|NM_187717.1| Oryza sativa (japonica cultivar-group), p... 44 0.21
ref|XM_480132.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.21
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.21
gb|D48135.1|D48135 RICS14195A Rice green shoot Oryza sativa... 42 0.84
dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.84
dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.84
dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.84
gb|AC135569.6| Oryza sativa (japonica cultivar-group) chrom... 42 0.84
gb|AC133608.4| Oryza sativa (japonica cultivar-group) chrom... 42 0.84
gb|AACV01020319.1| Oryza sativa (japonica cultivar-group) c... 42 0.84
gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) c... 42 0.84
gb|AACV01026214.1| Oryza sativa (japonica cultivar-group) C... 42 0.84
gb|AACV01026323.1| Oryza sativa (japonica cultivar-group) C... 42 0.84
gb|AACV01026730.1| Oryza sativa (japonica cultivar-group) C... 42 0.84
gb|AACV01028398.1| Oryza sativa (japonica cultivar-group) C... 42 0.84
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.84
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.84
gb|AQ256346.1|AQ256346 nbxb0016M05r CUGI Rice BAC Library O... 40 3.3
gb|D24005.1|D24005 RICR0828A Rice root Oryza sativa (japoni... 40 3.3
gb|AU086004.1|AU086004 AU086004 Rice green shoot Oryza sati... 40 3.3
gb|AU096067.1|AU096067 AU096067 Rice green shoot Oryza sati... 40 3.3
gb|AU161456.1|AU161456 AU161456 Rice callus Oryza sativa (j... 40 3.3
gb|CA997966.1|CA997966 S234A1_G09 Rice cold stress germinat... 40 3.3
gb|CF323681.1|CF323681 HDN--04-H21.g1 OsHDAC1-overexpressin... 40 3.3
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 40 3.3
dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA... 40 3.3
dbj|AK064401.1| Oryza sativa (japonica cultivar-group) cDNA... 40 3.3
dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA... 40 3.3
dbj|AK105254.1| Oryza sativa (japonica cultivar-group) cDNA... 40 3.3
dbj|AK120230.1| Oryza sativa (japonica cultivar-group) cDNA... 40 3.3
gb|AC136787.4| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
dbj|AP003996.3| Oryza sativa (japonica cultivar-group) geno... 40 3.3
dbj|AP004064.3| Oryza sativa (japonica cultivar-group) geno... 40 3.3
ref|NT_107128.1| Oryza sativa (japonica cultivar-group) 40 3.3
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 40 3.3
dbj|AP004680.3| Oryza sativa (japonica cultivar-group) geno... 40 3.3
gb|AC136378.4| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
dbj|AP000391.2| Oryza sativa (japonica cultivar-group) geno... 40 3.3
gb|AC136219.2| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
gb|AACV01005620.1| Oryza sativa (japonica cultivar-group) c... 40 3.3
gb|AACV01008676.1| Oryza sativa (japonica cultivar-group) c... 40 3.3
gb|AACV01012063.1| Oryza sativa (japonica cultivar-group) c... 40 3.3
gb|AACV01012963.1| Oryza sativa (japonica cultivar-group) c... 40 3.3
gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) c... 40 3.3
ref|XM_468316.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
ref|NT_079869.2| Oryza sativa (japonica cultivar-group) 40 3.3
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 40 3.3
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 40 3.3
emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromoso... 40 3.3
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 40 3.3
>dbj|AK100234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051O20, full
insert sequence
Length = 1612
Score = 767 bits (387), Expect = 0.0
Identities = 698/799 (87%), Gaps = 2/799 (0%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 276 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 335
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| || || ||||| ||| |||||||| |||| || |||||||||||||||||
Sbjct: 336 ggctacaccgtgcgtggcaccgtccggaaccctatggacccgaagaacgaccacctgaga 395
Query: 303 gcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctggacccacag 362
||||| |||||||||| ||| || ||||||||||||||||||||||| || ||||| |
Sbjct: 396 gccctggacggcgccggcgagcgcctcgtcctcctccgcgccgacctcctcgaccccgac 455
Query: 363 agccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtcacc 422
||||| | || |||||| ||||||| || |||||||||||||| |||||||| ||||||
Sbjct: 456 agcctcgtcgccgccttcaccggctgcgagggcgtcttccacgctgcctcccccgtcacc 515
Query: 423 gatgaccctgagatgatgatcgagccagcgatccggggcacgcgctacgtgatggcggcg 482
||||| ||||||| |||||| ||||| |||||| |||| ||| | |||||||| |||||
Sbjct: 516 gatgatcctgagaagatgatagagccggcgatcagggggacgagatacgtgataacggcg 575
Query: 483 gcggacgacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatg 542
|||| |||| |||| | ||||| || ||||||||||||||||||||||| || ||||||
Sbjct: 576 gcggccgacaccggcatcaagcgagtggtgttcacgtcctccatcggcactgtctacatg 635
Query: 543 aacccctaccgtgaccccagcaagcctgtggacgacacctgctggagcgacctcgagtat 602
||||||||| | ||||||| |||||| || ||||||||||||||||| |||||||| ||
Sbjct: 636 aacccctacagggaccccaacaagcccgtcgacgacacctgctggagtgacctcgaatac 695
Query: 603 tgcaagaacacccagaactggtactgctacgccaagacggtggcggagcagggcgcgtgg 662
||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 696 tgcaagaggacagagaactggtactgctacgcgaagacggtggcggagcagggtgcgtgg 755
Query: 663 gaggtggcgcggaagcgagggctggacctggtggtggtgaacccggtgctggtgctgggc 722
|||||||||||| ||| ||| |||||||||| || |||||||||||||||||||||||
Sbjct: 756 gaggtggcgcggcggcgtggggtggacctggtcgtagtgaacccggtgctggtgctggga 815
Query: 723 ccgctgctgcagccgacggtgaacgccagcacggaccacgtgatgaagtacctgacgggg 782
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 816 ccgctgctgcaggcgacggtgaacgcgagcacggagcacgtgatgaagtacctgacgggg 875
Query: 783 tcggccacgacctacgtgaacgcggcgcaggcgtacgtgcacgtcagggacgtggccgag 842
||||||| ||| ||||||||||| |||||||||||||| |||||| | ||||| ||||||
Sbjct: 876 tcggccaagacgtacgtgaacgcagcgcaggcgtacgtccacgtccgcgacgtcgccgag 935
Query: 843 gcgcacgtccgggtgtacga-ggcgccccacgcgcacggccgctacatctgcgccgagag 901
||||||||||| |||||||| ||| | ||||| ||||| |||||||||||||||||
Sbjct: 936 gcgcacgtccgcgtgtacgactgcg-gcggcgcgcggggccggtacatctgcgccgagag 994
Query: 902 caccctgcaccgcggcgacctctgccgcgtcctcgccaagctcttcccggagtaccccgt 961
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 995 caccctgcaccgcggcgacctctgccgcgccctcgccaagcttttcccggagtaccccgt 1054
Query: 962 acccaccaagtgcaaggac 980
|| | || ||||||||||
Sbjct: 1055 cccgagcaggtgcaaggac 1073
>ref|XM_450149.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1614
Score = 767 bits (387), Expect = 0.0
Identities = 698/799 (87%), Gaps = 2/799 (0%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 276 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 335
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| || || ||||| ||| |||||||| |||| || |||||||||||||||||
Sbjct: 336 ggctacaccgtgcgtggcaccgtccggaaccctatggacccgaagaacgaccacctgaga 395
Query: 303 gcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctggacccacag 362
||||| |||||||||| ||| || ||||||||||||||||||||||| || ||||| |
Sbjct: 396 gccctggacggcgccggcgagcgcctcgtcctcctccgcgccgacctcctcgaccccgac 455
Query: 363 agccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtcacc 422
||||| | || |||||| ||||||| || |||||||||||||| |||||||| ||||||
Sbjct: 456 agcctcgtcgccgccttcaccggctgcgagggcgtcttccacgctgcctcccccgtcacc 515
Query: 423 gatgaccctgagatgatgatcgagccagcgatccggggcacgcgctacgtgatggcggcg 482
||||| ||||||| |||||| ||||| |||||| |||| ||| | |||||||| |||||
Sbjct: 516 gatgatcctgagaagatgatagagccggcgatcagggggacgagatacgtgataacggcg 575
Query: 483 gcggacgacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatg 542
|||| |||| |||| | ||||| || ||||||||||||||||||||||| || ||||||
Sbjct: 576 gcggccgacaccggcatcaagcgagtggtgttcacgtcctccatcggcactgtctacatg 635
Query: 543 aacccctaccgtgaccccagcaagcctgtggacgacacctgctggagcgacctcgagtat 602
||||||||| | ||||||| |||||| || ||||||||||||||||| |||||||| ||
Sbjct: 636 aacccctacagggaccccaacaagcccgtcgacgacacctgctggagtgacctcgaatac 695
Query: 603 tgcaagaacacccagaactggtactgctacgccaagacggtggcggagcagggcgcgtgg 662
||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 696 tgcaagaggacagagaactggtactgctacgcgaagacggtggcggagcagggtgcgtgg 755
Query: 663 gaggtggcgcggaagcgagggctggacctggtggtggtgaacccggtgctggtgctgggc 722
|||||||||||| ||| ||| |||||||||| || |||||||||||||||||||||||
Sbjct: 756 gaggtggcgcggcggcgtggggtggacctggtcgtagtgaacccggtgctggtgctggga 815
Query: 723 ccgctgctgcagccgacggtgaacgccagcacggaccacgtgatgaagtacctgacgggg 782
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 816 ccgctgctgcaggcgacggtgaacgcgagcacggagcacgtgatgaagtacctgacgggg 875
Query: 783 tcggccacgacctacgtgaacgcggcgcaggcgtacgtgcacgtcagggacgtggccgag 842
||||||| ||| ||||||||||| |||||||||||||| |||||| | ||||| ||||||
Sbjct: 876 tcggccaagacgtacgtgaacgcagcgcaggcgtacgtccacgtccgcgacgtcgccgag 935
Query: 843 gcgcacgtccgggtgtacga-ggcgccccacgcgcacggccgctacatctgcgccgagag 901
||||||||||| |||||||| ||| | ||||| ||||| |||||||||||||||||
Sbjct: 936 gcgcacgtccgcgtgtacgactgcg-gcggcgcgcggggccggtacatctgcgccgagag 994
Query: 902 caccctgcaccgcggcgacctctgccgcgtcctcgccaagctcttcccggagtaccccgt 961
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 995 caccctgcaccgcggcgacctctgccgcgccctcgccaagcttttcccggagtaccccgt 1054
Query: 962 acccaccaagtgcaaggac 980
|| | || ||||||||||
Sbjct: 1055 cccgagcaggtgcaaggac 1073
>dbj|AP005561.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone OJ1189_B05,
*** SEQUENCING IN PROGRESS ***
Length = 164669
Score = 434 bits (219), Expect = e-119
Identities = 332/367 (90%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 35491 cagaactggtactgctacgcgaagacggtggcggagcagggtgcgtgggaggtggcgcgg 35550
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||| ||| |||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 35551 cggcgtggggtggacctggtcgtagtgaacccggtgctggtgctgggaccgctgctgcag 35610
Query: 735 ccgacggtgaacgccagcacggaccacgtgatgaagtacctgacggggtcggccacgacc 794
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 35611 gcgacggtgaacgcgagcacggagcacgtgatgaagtacctgacggggtcggccaagacg 35670
Query: 795 tacgtgaacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgg 854
||||||||||| |||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 35671 tacgtgaacgcagcgcaggcgtacgtccacgtccgcgacgtcgccgaggcgcacgtccgc 35730
Query: 855 gtgtacga-ggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccg 913
|||||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 35731 gtgtacgactgcg-gcggcgcgcggggccggtacatctgcgccgagagcaccctgcaccg 35789
Query: 914 cggcgacctctgccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtg 973
||||||||||||||||| |||||||||||| ||||||||||||||||| || | || |||
Sbjct: 35790 cggcgacctctgccgcgccctcgccaagcttttcccggagtaccccgtcccgagcaggtg 35849
Query: 974 caaggac 980
|||||||
Sbjct: 35850 caaggac 35856
Score = 147 bits (74), Expect = 2e-032
Identities = 152/178 (85%)
Strand = Plus / Plus
Query: 432 gagatgatgatcgagccagcgatccggggcacgcgctacgtgatggcggcggcggacgac 491
|||| |||||| ||||| |||||| |||| ||| | |||||||| ||||||||| ||||
Sbjct: 34022 gagaagatgatagagccggcgatcagggggacgagatacgtgataacggcggcggccgac 34081
Query: 492 gccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctac 551
|||| | ||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 34082 accggcatcaagcgagtggtgttcacgtcctccatcggcactgtctacatgaacccctac 34141
Query: 552 cgtgaccccagcaagcctgtggacgacacctgctggagcgacctcgagtattgcaaga 609
| ||||||| |||||| || ||||||||||||||||| |||||||| || |||||||
Sbjct: 34142 agggaccccaacaagcccgtcgacgacacctgctggagtgacctcgaatactgcaaga 34199
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Plus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 33759 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 33818
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 33819 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 33878
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 33879 gtcttccacgctgcctcccccgtcaccgatgatcctg 33915
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 33546 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 33605
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 33606 ggctacaccgtgcgtggcaccgtccggaaccct 33638
>ref|NT_107076.1| Oryza sativa (japonica cultivar-group)
Length = 2702857
Score = 434 bits (219), Expect = e-119
Identities = 332/367 (90%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 2032401 cagaactggtactgctacgcgaagacggtggcggagcagggtgcgtgggaggtggcgcgg 2032342
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||| ||| |||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 2032341 cggcgtggggtggacctggtcgtagtgaacccggtgctggtgctgggaccgctgctgcag 2032282
Query: 735 ccgacggtgaacgccagcacggaccacgtgatgaagtacctgacggggtcggccacgacc 794
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 2032281 gcgacggtgaacgcgagcacggagcacgtgatgaagtacctgacggggtcggccaagacg 2032222
Query: 795 tacgtgaacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgg 854
||||||||||| |||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 2032221 tacgtgaacgcagcgcaggcgtacgtccacgtccgcgacgtcgccgaggcgcacgtccgc 2032162
Query: 855 gtgtacga-ggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccg 913
|||||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 2032161 gtgtacgactgcg-gcggcgcgcggggccggtacatctgcgccgagagcaccctgcaccg 2032103
Query: 914 cggcgacctctgccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtg 973
||||||||||||||||| |||||||||||| ||||||||||||||||| || | || |||
Sbjct: 2032102 cggcgacctctgccgcgccctcgccaagcttttcccggagtaccccgtcccgagcaggtg 2032043
Query: 974 caaggac 980
|||||||
Sbjct: 2032042 caaggac 2032036
Score = 147 bits (74), Expect = 2e-032
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 432 gagatgatgatcgagccagcgatccggggcacgcgctacgtgatggcggcggcggacgac 491
|||| |||||| ||||| |||||| |||| ||| | |||||||| ||||||||| ||||
Sbjct: 2033870 gagaagatgatagagccggcgatcagggggacgagatacgtgataacggcggcggccgac 2033811
Query: 492 gccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctac 551
|||| | ||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 2033810 accggcatcaagcgagtggtgttcacgtcctccatcggcactgtctacatgaacccctac 2033751
Query: 552 cgtgaccccagcaagcctgtggacgacacctgctggagcgacctcgagtattgcaaga 609
| ||||||| |||||| || ||||||||||||||||| |||||||| || |||||||
Sbjct: 2033750 agggaccccaacaagcccgtcgacgacacctgctggagtgacctcgaatactgcaaga 2033693
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 2034133 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 2034074
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 2034073 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 2034014
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 2034013 gtcttccacgctgcctcccccgtcaccgatgatcctg 2033977
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 2034346 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 2034287
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 2034286 ggctacaccgtgcgtggcaccgtccggaaccct 2034254
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1352_A10
Length = 111655
Score = 434 bits (219), Expect = e-119
Identities = 332/367 (90%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 66432 cagaactggtactgctacgcgaagacggtggcggagcagggtgcgtgggaggtggcgcgg 66373
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||| ||| |||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 66372 cggcgtggggtggacctggtcgtagtgaacccggtgctggtgctgggaccgctgctgcag 66313
Query: 735 ccgacggtgaacgccagcacggaccacgtgatgaagtacctgacggggtcggccacgacc 794
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 66312 gcgacggtgaacgcgagcacggagcacgtgatgaagtacctgacggggtcggccaagacg 66253
Query: 795 tacgtgaacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgg 854
||||||||||| |||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 66252 tacgtgaacgcagcgcaggcgtacgtccacgtccgcgacgtcgccgaggcgcacgtccgc 66193
Query: 855 gtgtacga-ggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccg 913
|||||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 66192 gtgtacgactgcg-gcggcgcgcggggccggtacatctgcgccgagagcaccctgcaccg 66134
Query: 914 cggcgacctctgccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtg 973
||||||||||||||||| |||||||||||| ||||||||||||||||| || | || |||
Sbjct: 66133 cggcgacctctgccgcgccctcgccaagcttttcccggagtaccccgtcccgagcaggtg 66074
Query: 974 caaggac 980
|||||||
Sbjct: 66073 caaggac 66067
Score = 147 bits (74), Expect = 2e-032
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 432 gagatgatgatcgagccagcgatccggggcacgcgctacgtgatggcggcggcggacgac 491
|||| |||||| ||||| |||||| |||| ||| | |||||||| ||||||||| ||||
Sbjct: 67901 gagaagatgatagagccggcgatcagggggacgagatacgtgataacggcggcggccgac 67842
Query: 492 gccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctac 551
|||| | ||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 67841 accggcatcaagcgagtggtgttcacgtcctccatcggcactgtctacatgaacccctac 67782
Query: 552 cgtgaccccagcaagcctgtggacgacacctgctggagcgacctcgagtattgcaaga 609
| ||||||| |||||| || ||||||||||||||||| |||||||| || |||||||
Sbjct: 67781 agggaccccaacaagcccgtcgacgacacctgctggagtgacctcgaatactgcaaga 67724
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 68164 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 68105
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 68104 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 68045
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 68044 gtcttccacgctgcctcccccgtcaccgatgatcctg 68008
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 68377 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 68318
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 68317 ggctacaccgtgcgtggcaccgtccggaaccct 68285
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 434 bits (219), Expect = e-119
Identities = 332/367 (90%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 2031065 cagaactggtactgctacgcgaagacggtggcggagcagggtgcgtgggaggtggcgcgg 2031006
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||| ||| |||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 2031005 cggcgtggggtggacctggtcgtagtgaacccggtgctggtgctgggaccgctgctgcag 2030946
Query: 735 ccgacggtgaacgccagcacggaccacgtgatgaagtacctgacggggtcggccacgacc 794
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 2030945 gcgacggtgaacgcgagcacggagcacgtgatgaagtacctgacggggtcggccaagacg 2030886
Query: 795 tacgtgaacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgg 854
||||||||||| |||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 2030885 tacgtgaacgcagcgcaggcgtacgtccacgtccgcgacgtcgccgaggcgcacgtccgc 2030826
Query: 855 gtgtacga-ggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccg 913
|||||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 2030825 gtgtacgactgcg-gcggcgcgcggggccggtacatctgcgccgagagcaccctgcaccg 2030767
Query: 914 cggcgacctctgccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtg 973
||||||||||||||||| |||||||||||| ||||||||||||||||| || | || |||
Sbjct: 2030766 cggcgacctctgccgcgccctcgccaagcttttcccggagtaccccgtcccgagcaggtg 2030707
Query: 974 caaggac 980
|||||||
Sbjct: 2030706 caaggac 2030700
Score = 147 bits (74), Expect = 2e-032
Identities = 152/178 (85%)
Strand = Plus / Minus
Query: 432 gagatgatgatcgagccagcgatccggggcacgcgctacgtgatggcggcggcggacgac 491
|||| |||||| ||||| |||||| |||| ||| | |||||||| ||||||||| ||||
Sbjct: 2032534 gagaagatgatagagccggcgatcagggggacgagatacgtgataacggcggcggccgac 2032475
Query: 492 gccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctac 551
|||| | ||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 2032474 accggcatcaagcgagtggtgttcacgtcctccatcggcactgtctacatgaacccctac 2032415
Query: 552 cgtgaccccagcaagcctgtggacgacacctgctggagcgacctcgagtattgcaaga 609
| ||||||| |||||| || ||||||||||||||||| |||||||| || |||||||
Sbjct: 2032414 agggaccccaacaagcccgtcgacgacacctgctggagtgacctcgaatactgcaaga 2032357
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 2032797 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 2032738
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 2032737 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 2032678
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 2032677 gtcttccacgctgcctcccccgtcaccgatgatcctg 2032641
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 2033010 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 2032951
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 2032950 ggctacaccgtgcgtggcaccgtccggaaccct 2032918
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 15023374 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 15023330
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 15024211 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 15024170
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 15023467 cagaactggtactgctacggtaaggcggtggcagagcagg 15023428
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 15023915 cctgctggagcgacctcgagttctgcaagaa 15023885
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 15021856 ctctacgagacggtgaagagcctccaggagaa 15021825
>dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0019C09, ***
SEQUENCING IN PROGRESS ***
Length = 151928
Score = 184 bits (93), Expect = 9e-044
Identities = 330/409 (80%)
Strand = Plus / Minus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 146318 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 146259
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 146258 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 146199
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct: 146198 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgcc 146139
Query: 750 agcacggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcg 809
|||||| |||||| | ||||||||| || ||||| ||||||| ||||||||
Sbjct: 146138 agcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcg 146079
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 146078 caggcgtacgtgcacgtccgcgacgtcgcggacgcgcacgcgcgcgcctacgagtccccc 146019
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 146018 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 145959
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaagg 978
|||| ||| |||||||||| |||||| || ||||||| ||||||||
Sbjct: 145958 atcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagg 145910
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 147509 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 147450
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 147449 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 147403
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 146632 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 146573
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 146572 ccgacgaccc 146563
>dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143B20, full
insert sequence
Length = 1441
Score = 184 bits (93), Expect = 9e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
|||||||||||||||| || || |||||| | ||| ||||||||||||||||| |||
Sbjct: 655 cctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaagg 714
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| |||||||||| ||||||| ||||||| |||| ||||||||||
Sbjct: 715 cggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtgg 774
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 775 tgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagc 827
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 1001 ccgcatcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 1049
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 454 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 502
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 255 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 314
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 315 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 374
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 375 gcgctcgacggcgccg 390
>dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A12, full
insert sequence
Length = 1423
Score = 184 bits (93), Expect = 9e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
|||||||||||||||| || || |||||| | ||| ||||||||||||||||| |||
Sbjct: 654 cctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaagg 713
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| |||||||||| ||||||| ||||||| |||| ||||||||||
Sbjct: 714 cggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtgg 773
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 774 tgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagc 826
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 1000 ccgcatcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 1048
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 453 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 501
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 254 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 313
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 314 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 373
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 374 gcgctcgacggcgccg 389
>dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A12, full
insert sequence
Length = 1439
Score = 184 bits (93), Expect = 9e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
|||||||||||||||| || || |||||| | ||| ||||||||||||||||| |||
Sbjct: 655 cctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaagg 714
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| |||||||||| ||||||| ||||||| |||| ||||||||||
Sbjct: 715 cggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtgg 774
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 775 tgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagc 827
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 1001 ccgcatcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 1049
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 454 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 502
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 255 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 314
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 315 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 374
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 375 gcgctcgacggcgccg 390
>dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D08, full
insert sequence
Length = 1420
Score = 184 bits (93), Expect = 9e-044
Identities = 330/409 (80%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 601 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 660
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 661 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 720
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct: 721 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgcc 780
Query: 750 agcacggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcg 809
|||||| |||||| | ||||||||| || ||||| ||||||| ||||||||
Sbjct: 781 agcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcg 840
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 841 caggcgtacgtgcacgtccgcgacgtcgcggacgcgcacgcgcgcgcctacgagtccccc 900
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 901 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 960
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaagg 978
|||| ||| |||||||||| |||||| || ||||||| ||||||||
Sbjct: 961 atcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagg 1009
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 201 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 260
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 261 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 307
Score = 71.9 bits (36), Expect = 9e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 395 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 454
Query: 421 ccgatgaccctgagatgatgatcgagcc 448
|||| ||||| |||| ||||||||||||
Sbjct: 455 ccgacgacccggagaagatgatcgagcc 482
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0091M20
Length = 132976
Score = 184 bits (93), Expect = 9e-044
Identities = 330/409 (80%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 10762 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 10821
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 10822 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 10881
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct: 10882 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgcc 10941
Query: 750 agcacggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcg 809
|||||| |||||| | ||||||||| || ||||| ||||||| ||||||||
Sbjct: 10942 agcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcg 11001
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 11002 caggcgtacgtgcacgtccgcgacgtcgcggacgcgcacgcgcgcgcctacgagtccccc 11061
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 11062 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 11121
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaagg 978
|||| ||| |||||||||| |||||| || ||||||| ||||||||
Sbjct: 11122 atcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagg 11170
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 9571 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 9630
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 9631 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 9677
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 10448 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 10507
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 10508 ccgacgaccc 10517
>ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1420
Score = 184 bits (93), Expect = 9e-044
Identities = 330/409 (80%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 601 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 660
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 661 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 720
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct: 721 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgcc 780
Query: 750 agcacggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcg 809
|||||| |||||| | ||||||||| || ||||| ||||||| ||||||||
Sbjct: 781 agcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcg 840
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 841 caggcgtacgtgcacgtccgcgacgtcgcggacgcgcacgcgcgcgcctacgagtccccc 900
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 901 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 960
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaagg 978
|||| ||| |||||||||| |||||| || ||||||| ||||||||
Sbjct: 961 atcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagg 1009
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 201 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 260
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 261 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 307
Score = 71.9 bits (36), Expect = 9e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 395 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 454
Query: 421 ccgatgaccctgagatgatgatcgagcc 448
|||| ||||| |||| ||||||||||||
Sbjct: 455 ccgacgacccggagaagatgatcgagcc 482
>ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1423
Score = 184 bits (93), Expect = 9e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
|||||||||||||||| || || |||||| | ||| ||||||||||||||||| |||
Sbjct: 654 cctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaagg 713
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| |||||||||| ||||||| ||||||| |||| ||||||||||
Sbjct: 714 cggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtgg 773
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 774 tgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagc 826
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 1000 ccgcatcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 1048
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 453 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 501
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 254 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 313
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 314 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 373
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 374 gcgctcgacggcgccg 389
>ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1
mRNA
Length = 1441
Score = 184 bits (93), Expect = 9e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
|||||||||||||||| || || |||||| | ||| ||||||||||||||||| |||
Sbjct: 655 cctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaagg 714
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| |||||||||| ||||||| ||||||| |||| ||||||||||
Sbjct: 715 cggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtgg 774
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 775 tgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagc 827
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 1001 ccgcatcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 1049
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 454 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 502
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 255 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 314
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 315 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 374
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 375 gcgctcgacggcgccg 390
>ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1
mRNA
Length = 1439
Score = 184 bits (93), Expect = 9e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
|||||||||||||||| || || |||||| | ||| ||||||||||||||||| |||
Sbjct: 655 cctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaagg 714
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| |||||||||| ||||||| ||||||| |||| ||||||||||
Sbjct: 715 cggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtgg 774
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 775 tgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagc 827
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 1001 ccgcatcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 1049
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 454 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 502
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 255 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 314
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 315 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 374
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 375 gcgctcgacggcgccg 390
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 184 bits (93), Expect = 9e-044
Identities = 330/409 (80%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 10481156 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 10481215
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 10481216 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 10481275
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct: 10481276 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgcc 10481335
Query: 750 agcacggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcg 809
|||||| |||||| | ||||||||| || ||||| ||||||| ||||||||
Sbjct: 10481336 agcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcg 10481395
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 10481396 caggcgtacgtgcacgtccgcgacgtcgcggacgcgcacgcgcgcgcctacgagtccccc 10481455
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 10481456 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 10481515
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaagg 978
|||| ||| |||||||||| |||||| || ||||||| ||||||||
Sbjct: 10481516 atcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagg 10481564
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 21265233 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 21265174
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 21265173 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 21265114
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 21265113 ccgacggtgaacgccagc 21265096
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 10479965 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 10480024
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 10480025 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 10480071
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 21267781 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 21267733
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 21264922 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 21264879
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 10480842 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 10480901
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 10480902 ccgacgaccc 10480911
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 2762903 cggtgccggtgctgggcccgctgctg 2762878
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 21268074 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 21268015
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 21268014 ggctacactgtcaagggcaccgtcaggaaccc 21267983
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 184 bits (93), Expect = 9e-044
Identities = 330/409 (80%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 10713630 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 10713689
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 10713690 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 10713749
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct: 10713750 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgcc 10713809
Query: 750 agcacggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcg 809
|||||| |||||| | ||||||||| || ||||| ||||||| ||||||||
Sbjct: 10713810 agcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcg 10713869
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 10713870 caggcgtacgtgcacgtccgcgacgtcgcggacgcgcacgcgcgcgcctacgagtccccc 10713929
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 10713930 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 10713989
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaagg 978
|||| ||| |||||||||| |||||| || ||||||| ||||||||
Sbjct: 10713990 atcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagg 10714038
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 21503320 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 21503261
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 21503260 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 21503201
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 21503200 ccgacggtgaacgccagc 21503183
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 10712439 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 10712498
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 10712499 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 10712545
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 21505868 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 21505820
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 21503009 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 21502966
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 10713316 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 10713375
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 10713376 ccgacgaccc 10713385
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 2995377 cggtgccggtgctgggcccgctgctg 2995352
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 21506161 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 21506102
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 21506101 ggctacactgtcaagggcaccgtcaggaaccc 21506070
>dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1244_D07,
*** SEQUENCING IN PROGRESS ***
Length = 104295
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 7404 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 7345
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 7344 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 7285
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 7284 ccgacggtgaacgccagc 7267
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 9952 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 9904
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 7093 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 7050
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 10245 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 10186
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 10185 ggctacactgtcaagggcaccgtcaggaaccc 10154
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0528B09
Length = 156897
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 107315 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 107256
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 107255 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 107196
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 107195 ccgacggtgaacgccagc 107178
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 109863 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 109815
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 107004 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 106961
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 110156 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 110097
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 110096 ggctacactgtcaagggcaccgtcaggaaccc 110065
>gb|AACV01018567.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018567, whole
genome shotgun sequence
Length = 9310
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 2338 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 2397
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 2398 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 2457
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 2458 ccgacggtgaacgccagc 2475
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 2649 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 2692
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 12759270 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 12759211
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 12759210 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 12759151
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 12759150 ccgacggtgaacgccagc 12759133
Score = 125 bits (63), Expect = 7e-026
Identities = 172/207 (83%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 2501867 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 2501926
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 2501927 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 2501986
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| ||||||||||||||| || ||||||||||
Sbjct: 2501987 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcag-cgcgggtgaacgcc 2502045
Query: 750 agcacggaccacgtgatgaagtacctg 776
|||||| |||||| | |||||||||
Sbjct: 2502046 agcacgtggcacgtgctcaagtacctg 2502072
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 2500676 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 2500735
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 2500736 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 2500782
Score = 69.9 bits (35), Expect = 4e-009
Identities = 128/159 (80%)
Strand = Plus / Plus
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 2502105 caggcgtacgtgcacgtccgcgacgtcgcggaagcgcacgcgcgcgcctacgagtccccc 2502164
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 2502165 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 2502224
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccacc 968
|||| ||| |||||||||| |||||| || ||||||
Sbjct: 2502225 atcctggccgccctcttcccggggtacccggtgcccacc 2502263
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 12762670 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 12762622
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 12758959 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 12758916
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 2501553 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 2501612
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 2501613 ccgacgaccc 2501622
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 12762963 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 12762904
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 12762903 ggctacactgtcaagggcaccgtcaggaaccc 12762872
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 170 bits (86), Expect = 1e-039
Identities = 125/138 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||
Sbjct: 20361276 cagaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcgg 20361217
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 20361216 cggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcag 20361157
Query: 735 ccgacggtgaacgccagc 752
||||||||||||||||||
Sbjct: 20361156 ccgacggtgaacgccagc 20361139
Score = 125 bits (63), Expect = 7e-026
Identities = 172/207 (83%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 10103873 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 10103932
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 10103933 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 10103992
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| ||||||||||||||| || ||||||||||
Sbjct: 10103993 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcag-cgcgggtgaacgcc 10104051
Query: 750 agcacggaccacgtgatgaagtacctg 776
|||||| |||||| | |||||||||
Sbjct: 10104052 agcacgtggcacgtgctcaagtacctg 10104078
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 10102682 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 10102741
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 10102742 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 10102788
Score = 69.9 bits (35), Expect = 4e-009
Identities = 128/159 (80%)
Strand = Plus / Plus
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 10104111 caggcgtacgtgcacgtccgcgacgtcgcggaagcgcacgcgcgcgcctacgagtccccc 10104170
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 10104171 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 10104230
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccacc 968
|||| ||| |||||||||| |||||| || ||||||
Sbjct: 10104231 atcctggccgccctcttcccggggtacccggtgcccacc 10104269
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 20364676 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 20364628
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccacca 969
|||| ||||||||||||||||||| |||||||| || |||||||
Sbjct: 20360965 ccgcatcctcgccaagctcttccccgagtaccctgtccccacca 20360922
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 10103559 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 10103618
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 10103619 ccgacgaccc 10103628
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 2850136 cggtgccggtgctgggcccgctgctg 2850111
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 20364969 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 20364910
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 20364909 ggctacactgtcaagggcaccgtcaggaaccc 20364878
>gb|D49081.2|D49081 RICS15730A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 269
Score = 143 bits (72), Expect = 3e-031
Identities = 121/136 (88%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 617 gaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaa 676
|||||| |||||||||| ||| ||||||||||| ||| |||||||||| |||||||
Sbjct: 14 gaactgttactgctacgggaaggcggtggcggag-aggcggcgtgggaggcggcgcggcg 72
Query: 677 gcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagcc 736
||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 73 gcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcagcc 132
Query: 737 gacggtgaacgccagc 752
||||||||||||||||
Sbjct: 133 gacggtgaacgccagc 148
>gb|AACV01019116.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019116,
whole genome shotgun sequence
Length = 38396
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 730 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 671
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 670 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 611
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 610 gtcttccacgctgcctcccccgtcaccgatgatcctg 574
Score = 105 bits (53), Expect = 7e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtg 572
|||||||||||||||||||| || ||||||| ||||||| | ||||||| |||||| ||
Sbjct: 387 ttcacgtcctccatcggcactgtctacatgaccccctacagggaccccaacaagcccgtc 328
Query: 573 gacgacacctgctggagcgacctcgagtattgcaaga 609
||||||||||||||||| |||||||| || |||||||
Sbjct: 327 gacgacacctgctggagtgacctcgaatactgcaaga 291
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 943 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 884
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 883 ggctacaccgtgcgtggcaccgtccggaaccct 851
>gb|CH401232.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000069
genomic scaffold, whole genome shotgun sequence
Length = 1217354
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 570062 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 570003
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 570002 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 569943
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 569942 gtcttccacgctgcctcccccgtcaccgatgatcctg 569906
Score = 105 bits (53), Expect = 7e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtg 572
|||||||||||||||||||| || ||||||| ||||||| | ||||||| |||||| ||
Sbjct: 569719 ttcacgtcctccatcggcactgtctacatgaccccctacagggaccccaacaagcccgtc 569660
Query: 573 gacgacacctgctggagcgacctcgagtattgcaaga 609
||||||||||||||||| |||||||| || |||||||
Sbjct: 569659 gacgacacctgctggagtgacctcgaatactgcaaga 569623
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 570275 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 570216
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 570215 ggctacaccgtgcgtggcaccgtccggaaccct 570183
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 276 gtggatccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctc 335
||||| || ||||||||||||||||| ||||| |||||||||| ||| || |||||||||
Sbjct: 1601884 gtggacccgaagaacgaccacctgagagccctggacggcgccggcgagcgcctcgtcctc 1601825
Query: 336 ctccgcgccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggc 395
|||||||||||||| || ||||| | ||||| | || |||||| ||||||| || |||
Sbjct: 1601824 ctccgcgccgacctcctcgaccccgacagcctcgtcgccgccttcaccggctgcgagggc 1601765
Query: 396 gtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 1601764 gtcttccacgctgcctcccccgtcaccgatgatcctg 1601728
Score = 105 bits (53), Expect = 7e-020
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtg 572
|||||||||||||||||||| || ||||||| ||||||| | ||||||| |||||| ||
Sbjct: 1601541 ttcacgtcctccatcggcactgtctacatgaccccctacagggaccccaacaagcccgtc 1601482
Query: 573 gacgacacctgctggagcgacctcgagtattgcaaga 609
||||||||||||||||| |||||||| || |||||||
Sbjct: 1601481 gacgacacctgctggagtgacctcgaatactgcaaga 1601445
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||| ||||| || || |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 1602097 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctcgagaag 1602038
Query: 243 ggctacacagtccgcggcacggtcaggaaccct 275
|||||||| || || ||||| ||| ||||||||
Sbjct: 1602037 ggctacaccgtgcgtggcaccgtccggaaccct 1602005
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 13841383 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 13841339
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 13842220 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 13842179
Score = 52.0 bits (26), Expect = 9e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||| ||||||| || |||||||| |||||||||||||||||||
Sbjct: 17750244 tgcgtcaccggaggcggcgggttcatcgcctcctggctcgtcaagc 17750199
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 13841476 cagaactggtactgctacggtaaggcggtggcagagcagg 13841437
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 13841924 cctgctggagcgacctcgagttctgcaagaa 13841894
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 17729979 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 17729927
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 17720777 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 17720725
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || || ||||||| | ||| ||||||||||||| ||||||
Sbjct: 17714126 tgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcct 17714074
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 13839865 ctctacgagacggtgaagagcctccaggagaa 13839834
>gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017860, whole
genome shotgun sequence
Length = 40232
Score = 125 bits (63), Expect = 7e-026
Identities = 172/207 (83%), Gaps = 1/207 (0%)
Strand = Plus / Minus
Query: 570 gtggacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgc 629
|||||||| || ||||||||||||||||| | |||| | ||||| ||||||||||||
Sbjct: 33588 gtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgc 33529
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||||||| ||||||||| | || | |||| ||||||||
Sbjct: 33528 tacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggac 33469
Query: 690 ctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgcc 749
|| || || || |||||| ||||||||| ||||||||||||||| || ||||||||||
Sbjct: 33468 ctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcag-cgcgggtgaacgcc 33410
Query: 750 agcacggaccacgtgatgaagtacctg 776
|||||| |||||| | |||||||||
Sbjct: 33409 agcacgtggcacgtgctcaagtacctg 33383
Score = 77.8 bits (39), Expect = 2e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 170 agggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcg 229
|||||| || || ||||| ||||| || || |||||||| || || |||||||||||||
Sbjct: 34779 agggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagct 34720
Query: 230 cctcctggagaagggctacacagtccgcggcacggtcaggaaccctg 276
|||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct: 34719 cctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctg 34673
Score = 69.9 bits (35), Expect = 4e-009
Identities = 128/159 (80%)
Strand = Plus / Minus
Query: 810 caggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccc 869
|||||||||||||||||| | ||||| || || ||||||| || | |||||| | |||
Sbjct: 33350 caggcgtacgtgcacgtccgcgacgtcgcggaagcgcacgcgcgcgcctacgagtccccc 33291
Query: 870 cacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgc 929
||||| |||||||||| ||||||||| |||| |||||||||||||| | ||||||
Sbjct: 33290 gccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgc 33231
Query: 930 gtcctcgccaagctcttcccggagtaccccgtacccacc 968
|||| ||| |||||||||| |||||| || ||||||
Sbjct: 33230 atcctggccgccctcttcccggggtacccggtgcccacc 33192
Score = 52.0 bits (26), Expect = 9e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 361 agagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctccccggtca 420
||||||| |||| || ||| ||||||| || |||||||||||| |||||||||| |||
Sbjct: 33902 agagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatca 33843
Query: 421 ccgatgaccc 430
|||| |||||
Sbjct: 33842 ccgacgaccc 33833
>gb|AU174135.1|AU174135 AU174135 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0010, mRNA sequence
Length = 410
Score = 95.6 bits (48), Expect = 7e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|||||| ||| ||||||||| ||||| || |||||||||||| |||| ||||| ||||||
Sbjct: 146 gacgactccttctggagcgatctcgactactgcaagaacaccaagaattggtattgctac 205
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
|| |||||| | |||||| | ||||||||||||||| || || ||| ||||| ||
Sbjct: 206 gcgaagacgatagcggagaggaaggcgtgggaggtggcgaggggtcggggggtggacatg 265
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagcc 736
| |||||||| ||||||| ||||||| ||| ||||||||||||
Sbjct: 266 gcggtggtgatcccggtggtggtgctcggcgagctgctgcagcc 309
>gb|CF325629.1|CF325629 JMT1--03-M02.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-M02, mRNA sequence
Length = 374
Score = 95.6 bits (48), Expect = 7e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|||||| ||| ||||||||| ||||| || |||||||||||| |||| ||||| ||||||
Sbjct: 158 gacgactccttctggagcgatctcgactactgcaagaacaccaagaattggtattgctac 217
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
|| |||||| | |||||| | ||||||||||||||| || || ||| ||||| ||
Sbjct: 218 gcgaagacgatagcggagaggaaggcgtgggaggtggcgaggggtcggggggtggacatg 277
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagcc 736
| |||||||| ||||||| ||||||| ||| ||||||||||||
Sbjct: 278 gcggtggtgatcccggtggtggtgctcggcgagctgctgcagcc 321
>gb|CF326004.1|CF326004 JMT1--04-N12.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-N12, mRNA sequence
Length = 674
Score = 95.6 bits (48), Expect = 7e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|||||| ||| ||||||||| ||||| || |||||||||||| |||| ||||| ||||||
Sbjct: 158 gacgactccttctggagcgatctcgactactgcaagaacaccaagaattggtattgctac 217
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
|| |||||| | |||||| | ||||||||||||||| || || ||| ||||| ||
Sbjct: 218 gcgaagacgatagcggagaggaaggcgtgggaggtggcgaggggtcggggggtggacatg 277
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagcc 736
| |||||||| ||||||| ||||||| ||| ||||||||||||
Sbjct: 278 gcggtggtgatcccggtggtggtgctcggcgagctgctgcagcc 321
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 468 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 527
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 528 gcctcttcccggagta 543
>dbj|AK070746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M01, full
insert sequence
Length = 1335
Score = 95.6 bits (48), Expect = 7e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|||||| ||| ||||||||| ||||| || |||||||||||| |||| ||||| ||||||
Sbjct: 508 gacgactccttctggagcgatctcgactactgcaagaacaccaagaattggtattgctac 567
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
|| |||||| | |||||| | ||||||||||||||| || || ||| ||||| ||
Sbjct: 568 gcgaagacgatagcggagaggaaggcgtgggaggtggcgaggggtcggggggtggacatg 627
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagcc 736
| |||||||| ||||||| ||||||| ||| ||||||||||||
Sbjct: 628 gcggtggtgatcccggtggtggtgctcggcgagctgctgcagcc 671
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 818 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 877
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 878 gcctcttcccggagta 893
>ref|XM_464328.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1335
Score = 95.6 bits (48), Expect = 7e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|||||| ||| ||||||||| ||||| || |||||||||||| |||| ||||| ||||||
Sbjct: 508 gacgactccttctggagcgatctcgactactgcaagaacaccaagaattggtattgctac 567
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
|| |||||| | |||||| | ||||||||||||||| || || ||| ||||| ||
Sbjct: 568 gcgaagacgatagcggagaggaaggcgtgggaggtggcgaggggtcggggggtggacatg 627
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagcc 736
| |||||||| ||||||| ||||||| ||| ||||||||||||
Sbjct: 628 gcggtggtgatcccggtggtggtgctcggcgagctgctgcagcc 671
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 818 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 877
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 878 gcctcttcccggagta 893
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1297_C09
Length = 163378
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 33862 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 33921
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 33922 gcctcttcccggagta 33937
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 33594 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 33653
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 33654 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 33713
Query: 735 cc 736
||
Sbjct: 33714 cc 33715
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacc 614
|||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct: 33157 gacgactccttctggagcgatctcgactactgcaagaacacc 33198
>gb|AACV01003485.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003485, whole
genome shotgun sequence
Length = 34476
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 1239 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 1298
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 1299 gcctcttcccggagta 1314
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 971 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 1030
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 1031 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 1090
Query: 735 cc 736
||
Sbjct: 1091 cc 1092
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacc 614
|||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct: 534 gacgactccttctggagcgatctcgactactgcaagaacacc 575
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 1464331 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 1464390
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 1464391 gcctcttcccggagta 1464406
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 1464063 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 1464122
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 1464123 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 1464182
Query: 735 cc 736
||
Sbjct: 1464183 cc 1464184
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacc 614
|||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct: 1463626 gacgactccttctggagcgatctcgactactgcaagaacacc 1463667
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 4579819 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 4579878
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 4579879 gcctcttcccggagta 4579894
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 4579551 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 4579610
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 4579611 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 4579670
Query: 735 cc 736
||
Sbjct: 4579671 cc 4579672
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacc 614
|||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct: 4579114 gacgactccttctggagcgatctcgactactgcaagaacacc 4579155
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 4579819 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 4579878
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 4579879 gcctcttcccggagta 4579894
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 4579551 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 4579610
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 4579611 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 4579670
Query: 735 cc 736
||
Sbjct: 4579671 cc 4579672
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 34861884 tacaagttctcgaaccagaggctcaaggatttggggttgga 34861924
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||||| |||||||||||| || |||||||||
Sbjct: 34869716 ggcgtcttccacgtcgcctccccggtgtccaatgaccctg 34869755
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 34888177 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 34888227
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 34870738 tacaagttctcgaaccagaggctcaaggatttggg 34870772
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 34861171 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 34861216
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacc 614
|||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct: 4579114 gacgactccttctggagcgatctcgactactgcaagaacacc 4579155
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 34888388 gtactgctacgcaaagacgatggcggag 34888415
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 34860969 acggcgtcttccatgtcgcctccccggt 34860996
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 34670533 acggcgtcttccatgtcgcctccccggt 34670506
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 34669609 aagttctcgaaccagaggctcaaggatttggg 34669578
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 87.7 bits (44), Expect = 2e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 880 gccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccgcgtcctcgcca 939
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 4498483 gccggtacatctgcgccgagcgcaccctgcaccgcggcgagctctgccggatcctcgccg 4498542
Query: 940 agctcttcccggagta 955
||||||||||||||
Sbjct: 4498543 gcctcttcccggagta 4498558
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 4498215 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 4498274
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 4498275 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 4498334
Query: 735 cc 736
||
Sbjct: 4498335 cc 4498336
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 34762322 tacaagttctcgaaccagaggctcaaggatttggggttgga 34762362
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||||| |||||||||||| || |||||||||
Sbjct: 34776442 ggcgtcttccacgtcgcctccccggtgtccaatgaccctg 34776481
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 34788801 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 34788851
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 34777464 tacaagttctcgaaccagaggctcaaggatttggg 34777498
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 34761609 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 34761654
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacc 614
|||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct: 4497778 gacgactccttctggagcgatctcgactactgcaagaacacc 4497819
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 34789012 gtactgctacgcaaagacgatggcggag 34789039
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 34761407 acggcgtcttccatgtcgcctccccggt 34761434
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 34584136 acggcgtcttccatgtcgcctccccggt 34584109
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 34583212 aagttctcgaaccagaggctcaaggatttggg 34583181
>gb|CB660333.1|CB660333 OSJNEd01P10.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P10 5', mRNA sequence
Length = 792
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 513 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 572
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 573 cggtggcagagcagg 587
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 641 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 685
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 321 acggcgtgttccacaccgcctcccccgtcaccgatgaccctgag 364
>gb|CB660334.1|CB660334 OSJNEd01P10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P10 3', mRNA sequence
Length = 686
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 645 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 586
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 585 cggtggcagagcagg 571
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 517 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 473
>gb|CB679593.1|CB679593 OSJNEf03E14.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03E14 5', mRNA sequence
Length = 813
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 485 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 544
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 545 cggtggcagagcagg 559
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 613 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 657
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 293 acggcgtgttccacaccgcctcccccgtcaccgatgaccctgag 336
>dbj|AK067949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128P15, full
insert sequence
Length = 1265
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 528 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 587
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 588 cggtggcagagcagg 602
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 656 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 700
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 336 acggcgtgttccacaccgcctcccccgtcaccgatgaccctgag 379
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 1016 ctctacgagacggtgaagagcctccaggagaa 1047
>dbj|AK104860.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D11, full
insert sequence
Length = 1245
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 527 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 586
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 587 cggtggcagagcagg 601
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 655 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 699
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 335 acggcgtgttccacaccgcctcccccgtcaccgatgaccctgag 378
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 1015 ctctacgagacggtgaagagcctccaggagaa 1046
>dbj|AK107198.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A12, full
insert sequence
Length = 1253
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 522 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 581
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 582 cggtggcagagcagg 596
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 650 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 694
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 330 acggcgtgttccacaccgcctcccccgtcaccgatgaccctgag 373
>dbj|AB122055.1| Oryza sativa (japonica cultivar-group) CCR mRNA for cinnamoyl
coenzyme A reductase, partial cds
Length = 1111
Score = 85.7 bits (43), Expect = 6e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 380 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 439
Query: 640 cggtggcggagcagg 654
||||||| |||||||
Sbjct: 440 cggtggcagagcagg 454
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| | ||||| || ||||||||||||||||||
Sbjct: 188 acggcgtgttccacacggcctcgcccgtcaccgatgaccctgag 231
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 829 ctctacgagacggtgaagagcctccaggagaa 860
>gb|CB678909.1|CB678909 OSJNEf01L21.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01L21 5', mRNA sequence
Length = 791
Score = 81.8 bits (41), Expect = 1e-012
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 596 cctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaagg 655
Query: 640 cggtggcggagca 652
||||||| |||||
Sbjct: 656 cggtggcagagca 668
Score = 65.9 bits (33), Expect = 6e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 724 gtgctggtggtcggcccgctgctgcagccgacagtgaacgccagc 768
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 300 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 341
>gb|CB647116.1|CB647116 OSJNEb09O10.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09O10 5', mRNA sequence
Length = 818
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 483 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 439
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 576 cagaactggtactgctacggtaaggcggtggcagagcagg 537
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagt 600
|||||||||||||||||||||
Sbjct: 639 cctgctggagcgacctcgagt 619
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0701F11
Length = 154950
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 92820 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 92776
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 93657 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 93616
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 92913 cagaactggtactgctacggtaaggcggtggcagagcagg 92874
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 93361 cctgctggagcgacctcgagttctgcaagaa 93331
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 91302 ctctacgagacggtgaagagcctccaggagaa 91271
>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0668D04
Length = 148848
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 15017 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 14973
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 15854 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 15813
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 15110 cagaactggtactgctacggtaaggcggtggcagagcagg 15071
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 15558 cctgctggagcgacctcgagttctgcaagaa 15528
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 13499 ctctacgagacggtgaagagcctccaggagaa 13468
>gb|AACV01019998.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019998, whole
genome shotgun sequence
Length = 21483
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 16905 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 16949
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 16068 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 16109
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 16812 cagaactggtactgctacggtaaggcggtggcagagcagg 16851
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 16364 cctgctggagcgacctcgagttctgcaagaa 16394
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 18423 ctctacgagacggtgaagagcctccaggagaa 18454
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 715177 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 715133
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 716014 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 715973
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 715270 cagaactggtactgctacggtaaggcggtggcagagcagg 715231
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 715718 cctgctggagcgacctcgagttctgcaagaa 715688
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 713659 ctctacgagacggtgaagagcctccaggagaa 713628
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 708 gtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 4367572 gtgctggtggtcggcccgctgctgcagccgacggtgaacgccagc 4367528
Score = 60.0 bits (30), Expect = 4e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 4368409 acggcgtgttccacaccgcctcccccgtcaccgatgaccctg 4368368
Score = 52.0 bits (26), Expect = 9e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||| ||||||| || |||||||| |||||||||||||||||||
Sbjct: 8276433 tgcgtcaccggaggcggcgggttcatcgcctcctggctcgtcaagc 8276388
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagg 654
||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 4367665 cagaactggtactgctacggtaaggcggtggcagagcagg 4367626
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 580 cctgctggagcgacctcgagtattgcaagaa 610
||||||||||||||||||||| ||||||||
Sbjct: 4368113 cctgctggagcgacctcgagttctgcaagaa 4368083
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 8256168 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 8256116
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 8246966 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 8246914
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || || ||||||| | ||| ||||||||||||| ||||||
Sbjct: 8240315 tgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcct 8240263
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 4366054 ctctacgagacggtgaagagcctccaggagaa 4366023
>gb|AU064260.2|AU064260 AU064260 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20420_1A, mRNA sequence
Length = 481
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggcggagcagggcgcgtgggaggtggcgcgg 674
||||| ||||| |||||||| |||||| | |||||| | ||||||||||||||| ||
Sbjct: 208 cagaattggtattgctacgcgaagacgatagcggagaggaaggcgtgggaggtggcgagg 267
Query: 675 aagcgagggctggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcag 734
|| ||| ||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||
Sbjct: 268 ggtcggggggtggacatggcggtggtgatcccggtggtggtgctcggcgagctgctgcag 327
Query: 735 cc 736
||
Sbjct: 328 cc 329
>gb|D46598.1|D46598 RICS11367A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 388
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 103 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 151
>dbj|AK102061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082D10, full
insert sequence
Length = 1090
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 548 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 596
Score = 42.1 bits (21), Expect = 0.84
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaag 608
|||||||||||||||| || |||||||||
Sbjct: 918 cctgctggagcgaccttgactattgcaag 946
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 255 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 314
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 315 ggctacactgtcaagggcaccgtcaggaaccc 346
>gb|AACV01001938.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001938, whole
genome shotgun sequence
Length = 6517
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 5118 gtggcggaggcgcacgtccgggtgtacgaggcg 5086
>gb|AACV01018568.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018568, whole
genome shotgun sequence
Length = 8330
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccc 430
||||||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct: 1013 ccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccc 965
Score = 40.1 bits (20), Expect = 3.3
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 1306 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 1247
Query: 243 ggctacacagtccgcggcacggtcaggaaccc 274
|||||||| ||| ||||| |||||||||||
Sbjct: 1246 ggctacactgtcaagggcaccgtcaggaaccc 1215
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0004A09
Length = 158826
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 81729 gtggcggaggcgcacgtccgggtgtacgaggcg 81697
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0696E01
Length = 194056
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 162526 gtggcggaggcgcacgtccgggtgtacgaggcg 162494
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 25715143 gtggcggaggcgcacgtccgggtgtacgaggcg 25715111
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 10141471 agaattggtactgctacgcgaagacggtggc 10141501
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10147339 tgctgcagccgacgctgaacgccagc 10147364
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10141582 tgctgcagccgacgctgaacgccagc 10141607
>ref|NM_192253.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1140
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 865 gtggcggaggcgcacgtccgggtgtacgaggcg 897
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 162526 gtggcggaggcgcacgtccgggtgtacgaggcg 162494
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005
genomic scaffold, whole genome shotgun sequence
Length = 17394610
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 203221 gtggcggaggcgcacgtccgggtgtacgaggcg 203189
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 25404942 gtggcggaggcgcacgtccgggtgtacgaggcg 25404910
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 10269198 agaattggtactgctacgcgaagacggtggc 10269228
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10274645 tgctgcagccgacgctgaacgccagc 10274670
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10269309 tgctgcagccgacgctgaacgccagc 10269334
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
||||| |||||||||||||||||||||||||||
Sbjct: 25634923 gtggcggaggcgcacgtccgggtgtacgaggcg 25634891
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 10143689 agaattggtactgctacgcgaagacggtggc 10143719
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10149557 tgctgcagccgacgctgaacgccagc 10149582
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10143800 tgctgcagccgacgctgaacgccagc 10143825
>gb|AU094766.1|AU094766 AU094766 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31533, mRNA sequence
Length = 494
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 931 tcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 41 tcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 84
>gb|AU184158.1|AU184158 AU184158 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1430, mRNA sequence
Length = 446
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 931 tcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 2 tcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 45
>gb|AU197607.1|AU197607 AU197607 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1554, mRNA sequence
Length = 449
Score = 56.0 bits (28), Expect = 6e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 931 tcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
||||||||||||||||||| |||||||| || ||||||| ||||
Sbjct: 5 tcctcgccaagctcttccccgagtaccctgtccccaccaggtgc 48
>gb|AACV01020321.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020321, whole
genome shotgun sequence
Length = 5887
Score = 52.0 bits (26), Expect = 9e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||| ||||||| || |||||||| |||||||||||||||||||
Sbjct: 1899 tgcgtcaccggaggcggcgggttcatcgcctcctggctcgtcaagc 1854
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0052C07, complete sequence
Length = 154528
Score = 52.0 bits (26), Expect = 9e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||| ||||||| || |||||||| |||||||||||||||||||
Sbjct: 6413 tgcgtcaccggaggcggcgggttcatcgcctcctggctcgtcaagc 6458
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || || ||||||| | ||| ||||||||||||| ||||||
Sbjct: 42150 tgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcct 42202
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 35500 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 35552
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 26413 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 26465
>gb|D46355.1|D46355 RICS10974A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 413
Score = 50.1 bits (25), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgag 434
||||||| |||||| || |||||| ||||||||||||||||||
Sbjct: 308 acggcgtgttccacaacgnctcccccgtcaccgatgaccctgag 351
>dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H01, full
insert sequence
Length = 1424
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 1000 gtggccgaggcgcacgtccgcgtctacgaggcg 1032
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
complete sequence
Length = 127304
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 108180 gtggccgaggcgcacgtccgcgtctacgaggcg 108212
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0017N18, complete sequence
Length = 156643
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 8279 gtggccgaggcgcacgtccgcgtctacgaggcg 8311
>gb|AACV01005630.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005630, whole
genome shotgun sequence
Length = 7463
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 2595 tacaagttctcgaaccagaggctcaaggatttggggttgga 2555
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 3308 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 3263
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 3510 acggcgtcttccatgtcgcctccccggt 3483
>gb|AACV01012761.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012761, whole
genome shotgun sequence
Length = 32379
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 6900 gtggccgaggcgcacgtccgcgtctacgaggcg 6932
>ref|XM_468343.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1014
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 871 tacaagttctcgaaccagaggctcaaggatttggggttgga 911
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 369 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 414
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 260 acggcgtcttccatgtcgcctccccggt 287
>ref|XM_475941.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1140
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 847 gtggccgaggcgcacgtccgcgtctacgaggcg 879
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 597595 tacaagttctcgaaccagaggctcaaggatttggggttgga 597635
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||||| |||||||||||| || |||||||||
Sbjct: 611715 ggcgtcttccacgtcgcctccccggtgtccaatgaccctg 611754
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 624074 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 624124
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 612737 tacaagttctcgaaccagaggctcaaggatttggg 612771
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 596882 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 596927
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 624285 gtactgctacgcaaagacgatggcggag 624312
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 596680 acggcgtcttccatgtcgcctccccggt 596707
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 419409 acggcgtcttccatgtcgcctccccggt 419382
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 418485 aagttctcgaaccagaggctcaaggatttggg 418454
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 215411 gtggccgaggcgcacgtccgcgtctacgaggcg 215443
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0016F11
Length = 134907
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 80170 tacaagttctcgaaccagaggctcaaggatttggggttgga 80210
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||||| |||||||||||| || |||||||||
Sbjct: 94290 ggcgtcttccacgtcgcctccccggtgtccaatgaccctg 94329
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 106649 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 106699
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 95312 tacaagttctcgaaccagaggctcaaggatttggg 95346
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 79457 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 79502
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 106860 gtactgctacgcaaagacgatggcggag 106887
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 79255 acggcgtcttccatgtcgcctccccggt 79282
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 10995698 gtggccgaggcgcacgtccgcgtctacgaggcg 10995730
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 1045570 tggcggcggcggacgacgcc 1045551
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggggatgga 1045
||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 21408820 tacaagttctcgaaccagaggctcaaggatttggggttgga 21408860
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||||| |||||||||||| || |||||||||
Sbjct: 21416652 ggcgtcttccacgtcgcctccccggtgtccaatgaccctg 21416691
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 21435113 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 21435163
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 21417674 tacaagttctcgaaccagaggctcaaggatttggg 21417708
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 21408107 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaacccc 21408152
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 21435324 gtactgctacgcaaagacgatggcggag 21435351
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 21407905 acggcgtcttccatgtcgcctccccggt 21407932
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 21217469 acggcgtcttccatgtcgcctccccggt 21217442
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 21216545 aagttctcgaaccagaggctcaaggatttggg 21216514
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 28296011 gtggccgaggcgcacgtccgcgtctacgaggcg 28296043
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 18345883 tggcggcggcggacgacgcc 18345864
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||| || |||||||||
Sbjct: 28580487 gtggccgaggcgcacgtccgcgtctacgaggcg 28580519
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 18613433 tggcggcggcggacgacgcc 18613414
>gb|AU163559.1|AU163559 AU163559 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1704, mRNA sequence
Length = 412
Score = 48.1 bits (24), Expect = 0.014
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
||||||||||| || | |||| ||| || || |||||||| |||| || || ||||||
Sbjct: 242 tgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaag 301
Query: 243 ggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgaccacctgagg 302
|||||||| ||| ||||| ||||||||||| | || || ||||||| ||||||| |
Sbjct: 302 ggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaag 361
Query: 303 gcccttgacggcgccg 318
|| || ||||||||||
Sbjct: 362 gcgctcgacggcgccg 377
>gb|AACV01005631.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005631, whole
genome shotgun sequence
Length = 9513
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccctg 432
||||||||||||| |||||||||||| || |||||||||
Sbjct: 5188 ggcgtcttccacgtcgcctccccggtgtccaatgaccctg 5227
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 6210 tacaagttctcgaaccagaggctcaaggatttggg 6244
>ref|NM_187716.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 981
Score = 48.1 bits (24), Expect = 0.014
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagacggtggc 646
||||| |||||||||||||| |||||||||||
Sbjct: 457 cagaattggtactgctacgcgaagacggtggc 488
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 569 tgctgcagccgacgctgaacgccagc 594
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0004B13
Length = 142268
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 68288 agaattggtactgctacgcgaagacggtggc 68318
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 74156 tgctgcagccgacgctgaacgccagc 74181
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 68399 tgctgcagccgacgctgaacgccagc 68424
>dbj|AK107665.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H02, full
insert sequence
Length = 1128
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 466 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 516
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 583 gtactgctacgcaaagacgatggcggag 610
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0053L11
Length = 147123
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 10396 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 10446
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 10607 gtactgctacgcaaagacgatggcggag 10634
>gb|AACV01000729.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000729, whole
genome shotgun sequence
Length = 42687
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 3160 agaattggtactgctacgcgaagacggtggc 3130
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 3049 tgctgcagccgacgctgaacgccagc 3024
>gb|AACV01005633.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005633, whole
genome shotgun sequence
Length = 14790
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 5946 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 5896
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 5735 gtactgctacgcaaagacgatggcggag 5708
>ref|XM_468346.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1065
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccagaggctcaaggatctggg 1039
||||||||| | |||||||||||||||||| ||||
Sbjct: 898 tacaagttctcgaaccagaggctcaaggatttggg 932
Score = 46.1 bits (23), Expect = 0.054
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtcaccgatgaccct 431
||||||||||||| |||||||||||| || ||||||||
Sbjct: 292 ggcgtcttccacgtcgcctccccggtgtccaatgaccct 330
>ref|XM_468350.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1020
Score = 46.1 bits (23), Expect = 0.054
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct: 384 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatgaaccccaaccg 434
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 623 gtactgctacgccaagacggtggcggag 650
|||||||||||| |||||| ||||||||
Sbjct: 516 gtactgctacgcaaagacgatggcggag 543
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 91158 agaattggtactgctacgcgaagacggtggc 91188
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 97026 tgctgcagccgacgctgaacgccagc 97051
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 91269 tgctgcagccgacgctgaacgccagc 91294
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0498A12
Length = 159749
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 9003 agaattggtactgctacgcgaagacggtggc 9033
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 14871 tgctgcagccgacgctgaacgccagc 14896
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 9114 tgctgcagccgacgctgaacgccagc 9139
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0581F09
Length = 154248
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 91158 agaattggtactgctacgcgaagacggtggc 91188
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 97026 tgctgcagccgacgctgaacgccagc 97051
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 91269 tgctgcagccgacgctgaacgccagc 91294
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 46.1 bits (23), Expect = 0.054
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 616 agaactggtactgctacgccaagacggtggc 646
|||| |||||||||||||| |||||||||||
Sbjct: 10269198 agaattggtactgctacgcgaagacggtggc 10269228
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10274645 tgctgcagccgacgctgaacgccagc 10274670
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 10269309 tgctgcagccgacgctgaacgccagc 10269334
>dbj|AK107149.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D12, full
insert sequence
Length = 1227
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 663 tgctgcagccgacgctgaacgccagc 688
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1349_D05
Length = 174478
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 46100 cggtgccggtgctgggcccgctgctg 46075
>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0019A05
Length = 144255
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 112530 cggtgccggtgctgggcccgctgctg 112505
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 2275467 cggtgccggtgctgggcccgctgctg 2275442
>gb|AACV01000731.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000731, whole
genome shotgun sequence
Length = 15155
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 14583 tgctgcagccgacgctgaacgccagc 14558
>gb|AACV01013783.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013783, whole
genome shotgun sequence
Length = 19050
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 4508 cggtgccggtgctgggcccgctgctg 4533
>gb|AACV01017275.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017275, whole
genome shotgun sequence
Length = 16198
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 5548 cggtgccggtgctgggcccgctgctg 5573
>ref|NM_187717.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 987
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 727 tgctgcagccgacggtgaacgccagc 752
|||||||||||||| |||||||||||
Sbjct: 572 tgctgcagccgacgctgaacgccagc 597
>ref|XM_480132.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1404
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 113 cggtgccggtgctgggcccgctgctg 138
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 2850136 cggtgccggtgctgggcccgctgctg 2850111
>gb|CH401212.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000049 genomic
scaffold, whole genome shotgun sequence
Length = 3314418
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 1211921 cggtgccggtgctgggcccgctgctg 1211896
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 12518042 cggtgccggtgctgggcccgctgctg 12518017
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 23778696 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 23778637
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctatatatagctgcagaa 42
||||||||||||||||||||
Sbjct: 1461502 agctatatatagctgcagaa 1461521
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 706 cggtgctggtgctgggcccgctgctg 731
|||||| |||||||||||||||||||
Sbjct: 12811753 cggtgccggtgctgggcccgctgctg 12811728
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 24706385 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 24706326
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctatatatagctgcagaa 42
||||||||||||||||||||
Sbjct: 1519231 agctatatatagctgcagaa 1519250
>gb|D48135.1|D48135 RICS14195A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || || ||||||| | ||| ||||||||||||| ||||||
Sbjct: 48 tgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcct 100
>dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F11, full
insert sequence
Length = 1270
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 133 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 185
>dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159B10, full
insert sequence
Length = 1452
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 134 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 186
>dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044G18, full
insert sequence
Length = 1342
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || || ||||||| | ||| ||||||||||||| ||||||
Sbjct: 94 tgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcct 146
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0018F17, complete sequence
Length = 104291
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 ggcggcggcggacgacgccgg 496
|||||||||||||||||||||
Sbjct: 20429 ggcggcggcggacgacgccgg 20409
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12,
complete sequence
Length = 121470
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 ggcggcggcggacgacgccgg 496
|||||||||||||||||||||
Sbjct: 114129 ggcggcggcggacgacgccgg 114109
>gb|AACV01020319.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020319, whole
genome shotgun sequence
Length = 31205
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 22602 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 22550
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || || ||||||| | ||| ||||||||||||| ||||||
Sbjct: 15951 tgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcct 15899
>gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020320,
whole genome shotgun sequence
Length = 17865
Score = 42.1 bits (21), Expect = 0.84
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||| ||||| || || |||||||| | ||| ||||||||||||| ||||||
Sbjct: 499 tgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcct 447
>gb|AACV01026214.1| Oryza sativa (japonica cultivar-group) Ctg026214, whole genome shotgun
sequence
Length = 15577
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 711 ctggtgctgggcccgctgctg 731
|||||||||||||||||||||
Sbjct: 14700 ctggtgctgggcccgctgctg 14720
>gb|AACV01026323.1| Oryza sativa (japonica cultivar-group) Ctg026323, whole genome
shotgun sequence
Length = 14571
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 711 ctggtgctgggcccgctgctg 731
|||||||||||||||||||||
Sbjct: 9378 ctggtgctgggcccgctgctg 9398
>gb|AACV01026730.1| Oryza sativa (japonica cultivar-group) Ctg026730, whole genome shotgun
sequence
Length = 10818
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 703 acccggtgctggtgctgggcc 723
|||||||||||||||||||||
Sbjct: 10688 acccggtgctggtgctgggcc 10668
>gb|AACV01028398.1| Oryza sativa (japonica cultivar-group) Ctg028398, whole genome
shotgun sequence
Length = 5783
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 703 acccggtgctggtgctgggcc 723
|||||||||||||||||||||
Sbjct: 140 acccggtgctggtgctgggcc 120
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 ggcggcggcggacgacgccgg 496
|||||||||||||||||||||
Sbjct: 17046472 ggcggcggcggacgacgccgg 17046452
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 870 cacgcgcacggccgctacat 889
||||||||||||||||||||
Sbjct: 16735395 cacgcgcacggccgctacat 16735414
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 42.1 bits (21), Expect = 0.84
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 ggcggcggcggacgacgccgg 496
|||||||||||||||||||||
Sbjct: 17141154 ggcggcggcggacgacgccgg 17141134
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 870 cacgcgcacggccgctacat 889
||||||||||||||||||||
Sbjct: 16829165 cacgcgcacggccgctacat 16829184
>gb|AQ256346.1|AQ256346 nbxb0016M05r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0016M05r, DNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 3.3
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 945 ttcccggagtaccccgtacccaccaagtgcaaggac 980
||||||||||||||||| || | || ||||||||||
Sbjct: 1 ttcccggagtaccccgtcccgagcaggtgcaaggac 36
>gb|D24005.1|D24005 RICR0828A Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R0828_1A, mRNA sequence
Length = 276
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 186 ctctacgagacggtgaagagcctccaggagaa 217
>gb|AU086004.1|AU086004 AU086004 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S10974, mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 386 ctctacgagacggtgaagagcctccaggagaa 417
>gb|AU096067.1|AU096067 AU096067 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S12055, mRNA sequence
Length = 337
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 ctctacgagacggtcaccagcctccaggagaa 1098
|||||||||||||| | ||||||||||||||
Sbjct: 86 ctctacgagacggtgaagagcctccaggagaa 117
>gb|AU161456.1|AU161456 AU161456 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C63223, mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 124 aagttctcgaaccagaggctcaaggatttggg 155
>gb|CA997966.1|CA997966 S234A1_G09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 327 acggcgtcttccatgtcgcctccccggt 354
>gb|CF323681.1|CF323681 HDN--04-H21.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-H21, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 117 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 176
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02,
*** SEQUENCING IN PROGRESS ***
Length = 140327
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 13290 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 13349
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full
insert sequence
Length = 1737
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 498 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 557
>dbj|AK064401.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H04, full
insert sequence
Length = 1428
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 999 aagttctcgaaccagaggctcaaggatttggg 1030
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 385 acggcgtcttccatgtcgcctccccggt 412
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full
insert sequence
Length = 1232
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 51 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 110
>dbj|AK105254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D09, full
insert sequence
Length = 2245
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 320 tggcggcggcggacgacgcc 301
>dbj|AK120230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D20, full
insert sequence
Length = 2915
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 363 tggcggcggcggacgacgcc 344
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0052B22, complete sequence
Length = 156725
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 870 cacgcgcacggccgctacat 889
||||||||||||||||||||
Sbjct: 50957 cacgcgcacggccgctacat 50976
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G06
Length = 122580
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 50751 acggcgtcttccatgtcgcctccccggt 50724
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 49827 aagttctcgaaccagaggctcaaggatttggg 49796
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1520_C09
Length = 145553
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 95076 acggcgtcttccatgtcgcctccccggt 95049
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 94152 aagttctcgaaccagaggctcaaggatttggg 94121
>ref|NT_107128.1| Oryza sativa (japonica cultivar-group)
Length = 344676
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 870 cacgcgcacggccgctacat 889
||||||||||||||||||||
Sbjct: 116509 cacgcgcacggccgctacat 116528
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 2171870 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 2171811
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0029G06
Length = 169711
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 40066 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 40007
>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0047D03,
complete sequence
Length = 126165
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 870 cacgcgcacggccgctacat 889
||||||||||||||||||||
Sbjct: 116509 cacgcgcacggccgctacat 116528
>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0538C01
Length = 155643
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctatatatagctgcagaa 42
||||||||||||||||||||
Sbjct: 47955 agctatatatagctgcagaa 47974
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0073E05, complete sequence
Length = 178013
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 86548 tggcggcggcggacgacgcc 86529
>gb|AACV01005620.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005620, whole
genome shotgun sequence
Length = 25089
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 3669 aagttctcgaaccagaggctcaaggatttggg 3700
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 2745 acggcgtcttccatgtcgcctccccggt 2772
>gb|AACV01008676.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008676, whole
genome shotgun sequence
Length = 54333
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 5570 gatggcggcggcggacgacg 5551
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 4953 gatggcggcggcggacgacg 4934
>gb|AACV01012063.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012063, whole
genome shotgun sequence
Length = 24620
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 475 tggcggcggcggacgacgcc 494
||||||||||||||||||||
Sbjct: 9323 tggcggcggcggacgacgcc 9304
>gb|AACV01012963.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012963, whole
genome shotgun sequence
Length = 54300
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctatatatagctgcagaa 42
||||||||||||||||||||
Sbjct: 37625 agctatatatagctgcagaa 37644
>gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014583, whole
genome shotgun sequence
Length = 16067
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 7324 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 7265
>ref|XM_468316.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1428
Score = 40.1 bits (20), Expect = 3.3
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1008 aagttcaccaaccagaggctcaaggatctggg 1039
|||||| | |||||||||||||||||| ||||
Sbjct: 999 aagttctcgaaccagaggctcaaggatttggg 1030
Score = 40.1 bits (20), Expect = 3.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggt 418
||||||||||||| | ||||||||||||
Sbjct: 385 acggcgtcttccatgtcgcctccccggt 412
>ref|NT_079869.2| Oryza sativa (japonica cultivar-group)
Length = 582377
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 74202 gatggcggcggcggacgacg 74183
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 73585 gatggcggcggcggacgacg 73566
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctatatatagctgcagaa 42
||||||||||||||||||||
Sbjct: 1482808 agctatatatagctgcagaa 1482827
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 40.1 bits (20), Expect = 3.3
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || || ||| | || || ||||||||||||| ||||||
Sbjct: 6079959 gacggtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcct 6079900
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctatatatagctgcagaa 42
||||||||||||||||||||
Sbjct: 1461502 agctatatatagctgcagaa 1461521
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021 genomic
scaffold, whole genome shotgun sequence
Length = 2817894
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 2363067 gatggcggcggcggacgacg 2363048
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 2362450 gatggcggcggcggacgacg 2362431
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 3848972 gatggcggcggcggacgacg 3848953
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 3848355 gatggcggcggcggacgacg 3848336
>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18,
complete sequence
Length = 132854
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 74202 gatggcggcggcggacgacg 74183
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 73585 gatggcggcggcggacgacg 73566
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 4231138 gatggcggcggcggacgacg 4231119
Score = 40.1 bits (20), Expect = 3.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcggacgacg 492
||||||||||||||||||||
Sbjct: 4230521 gatggcggcggcggacgacg 4230502
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,592,513
Number of Sequences: 438736
Number of extensions: 2592513
Number of successful extensions: 19697
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17302
Number of HSP's gapped (non-prelim): 2353
length of query: 1466
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1445
effective length of database: 2,791,206,460
effective search space: 4033293334700
effective search space used: 4033293334700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)