BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021175.2.1
(1225 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_189426.1| Oryza sativa (japonica cultivar-group), p... 337 9e-090
dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA... 329 2e-087
ref|NM_189423.1| Oryza sativa (japonica cultivar-group), p... 321 5e-085
gb|AACV01003099.1| Oryza sativa (japonica cultivar-group) c... 309 2e-081
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 309 2e-081
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 309 2e-081
dbj|AP003448.3| Oryza sativa (japonica cultivar-group) geno... 309 2e-081
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 309 2e-081
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 309 2e-081
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 309 2e-081
ref|NM_189425.1| Oryza sativa (japonica cultivar-group), p... 293 1e-076
gb|AC129716.3| Oryza sativa (japonica cultivar-group) chrom... 278 7e-072
gb|AACV01010747.1| Oryza sativa (japonica cultivar-group) c... 278 7e-072
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 278 7e-072
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 278 7e-072
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 278 7e-072
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 278 7e-072
ref|NM_189428.1| Oryza sativa (japonica cultivar-group), p... 226 2e-056
gb|BE039193.1|BE039193 OA01A11 OA Oryza sativa (japonica cu... 103 2e-019
gb|CK738586.1|CK738586 OA01A11_SK.ab1 OA Oryza sativa (japo... 103 2e-019
dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA... 100 3e-018
ref|NT_107134.1| Oryza sativa (japonica cultivar-group) 100 3e-018
gb|AACV01022354.1| Oryza sativa (japonica cultivar-group) c... 100 3e-018
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 100 3e-018
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 100 3e-018
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 100 3e-018
gb|AC120307.3| Oryza sativa (japonica cultivar-group) chrom... 100 3e-018
gb|AC116949.11| Oryza sativa (japonica cultivar-group) chro... 100 3e-018
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 100 3e-018
gb|AACV01012675.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
gb|AACV01009695.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
ref|XM_472395.1| Oryza sativa (japonica cultivar-group), p... 94 2e-016
ref|NT_107198.1| Oryza sativa (japonica cultivar-group) 94 2e-016
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromoso... 94 2e-016
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
gb|AC129717.3| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
gb|AACV01012676.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
ref|NT_107220.1| Oryza sativa (japonica cultivar-group) 88 1e-014
gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C0... 74 2e-010
gb|AACV01022143.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 74 2e-010
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
dbj|AB108421.1| Oryza sativa (japonica cultivar-group) tran... 74 2e-010
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|AQ327637.1|AQ327637 nbxb0041O14f CUGI Rice BAC Library O... 58 1e-005
gb|AQ579441.1|AQ579441 nbxb0084M10r CUGI Rice BAC Library O... 58 1e-005
dbj|AP004264.4| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP003745.5| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01015892.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_477696.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01026277.1| Oryza sativa (japonica cultivar-group) C... 54 2e-004
ref|XM_477688.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
gb|CH401463.1| Oryza sativa (japonica cultivar-group) scaff... 54 2e-004
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
gb|AACV01012563.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 48 0.011
gb|AC123526.2| Oryza sativa japonica cultivar-group chromos... 46 0.045
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 46 0.045
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 46 0.045
gb|AY707984.1| Oryza sativa (japonica cultivar-group) clone... 46 0.045
gb|AC151480.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
dbj|AP005395.3| Oryza sativa (japonica cultivar-group) geno... 46 0.045
gb|AACV01014832.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
gb|AACV01014833.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
gb|AACV01022331.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
gb|AACV01025310.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
dbj|AP003935.3| Oryza sativa (japonica cultivar-group) geno... 46 0.045
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
emb|AL845346.4|CNS08CB8 Oryza sativa chromosome 12, . BAC O... 46 0.045
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.045
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.045
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|CB640505.1|CB640505 OSJNEa15B22.f OSJNEa Oryza sativa (j... 44 0.18
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 44 0.18
dbj|AK073908.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK099579.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK107028.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK109294.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK119324.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC O... 44 0.18
dbj|AP004619.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C1... 44 0.18
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 44 0.18
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 44 0.18
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 44 0.18
gb|AACV01005728.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01017406.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01021823.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01024381.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 44 0.18
ref|XM_480346.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP003878.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.18
gb|CH401273.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
>ref|NM_189426.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 993
Score = 337 bits (170), Expect = 9e-090
Identities = 230/250 (92%)
Strand = Plus / Plus
Query: 276 gtgcccaagctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcga 335
|||||| ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 246 gtgccccagctgcaagaccttctgcatgtgcgacttctaccccggcgtgtcgtgcggcga 305
Query: 336 cccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaaggaccggga 395
||| || ||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 306 cccgcggttcaccggcggcgacggcaacaacttctacttccacggcaagaaggaccacga 365
Query: 396 cttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaa 455
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 366 cttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcggcaagcgcaa 425
Query: 456 cccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcacca 515
||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 426 ccccaccatgagccgcgacttcacctggatccaggccctcggcatccgcttcgccgacca 485
Query: 516 ccacctctac 525
|| |||||||
Sbjct: 486 ccgcctctac 495
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 691 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 750
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 751 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 804
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 805 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 864
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 865 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 924
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 925 gccgactgcgccgtcgc 941
>dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full
insert sequence
Length = 1352
Score = 329 bits (166), Expect = 2e-087
Identities = 217/234 (92%)
Strand = Plus / Plus
Query: 276 gtgcccaagctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcga 335
|||||| ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 400 gtgccccagctgcaagaccttctgcatgtgcgacttctaccccggcgtgtcgtgcggcga 459
Query: 336 cccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaaggaccggga 395
||| || ||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 460 cccgcggttcaccggcggcgacggcaacaacttctacttccacggcaagaaggaccacga 519
Query: 396 cttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaa 455
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 520 cttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcggcaagcgcaa 579
Query: 456 cccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgc 509
||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 580 ccccaccatgagccgcgacttcacctggatccaggccctcggcatccgcttcgc 633
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 843 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 902
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 903 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 956
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 957 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 1016
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 1017 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 1076
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 1077 gccgactgcgccgtcgc 1093
>ref|NM_189423.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 975
Score = 321 bits (162), Expect = 5e-085
Identities = 222/242 (91%)
Strand = Plus / Plus
Query: 284 gctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgct 343
|||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||| || |
Sbjct: 236 gctgcaagaccttctgcatgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggt 295
Query: 344 tcacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgca 403
|||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 296 tcaccggcggcgacggcaacaacttctactttcacggcaagaaggaccacgacttctgca 355
Query: 404 tcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggcca 463
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 356 tcgtctccgacgccgacctccacatcaacgcccacttcatcggcaagcgcaaccccacca 415
Query: 464 tgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcaccaccacctct 523
|||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||
Sbjct: 416 tgagccgcgacttcacctggatccaggccctcggcatccgcttcgccgaccaccgcctct 475
Query: 524 ac 525
||
Sbjct: 476 ac 477
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 673 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 732
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 733 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 786
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 787 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 846
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 847 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 906
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 907 accgactgcgccgtcgc 923
>gb|AACV01003099.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003099, whole
genome shotgun sequence
Length = 28804
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 15713 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 15654
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 15653 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 15594
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15593 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 15534
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 15533 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 15490
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 21865 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 21924
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 21925 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 21984
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21985 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 22044
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 22045 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 22088
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 17763 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 17822
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 17823 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 17882
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 17883 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 17942
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 17943 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 17986
Score = 228 bits (115), Expect = 6e-057
Identities = 187/211 (88%)
Strand = Plus / Minus
Query: 315 tcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggcaacaacttctactt 374
||||||| ||| |||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 11549 tcccggcacgtcgtgcggcgacccacggttcaccggcgccgacggcaacaccttctactt 11490
Query: 375 ccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccctccacatcaacgc 434
||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 11489 ccacggcaagaaggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgc 11430
Query: 435 gcacttcatcggcaagcgcaacccggccatgagccgcgacttcacctggatccaggcgct 494
|||||||||||||| | |||||||||||||| || |||||||||||||||||| | ||
Sbjct: 11429 ccacttcatcggcaaccacaacccggccatgaagcgtgacttcacctggatccagtccct 11370
Query: 495 gggcatccgcttcgcgcaccaccacctctac 525
|||||| |||||| |||||| |||||||
Sbjct: 11369 cggcatcagcttcggcgaccaccgcctctac 11339
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 18182 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 18241
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 18242 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 18295
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 18296 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 18355
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 18356 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 18415
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 18416 accgactgcgccgtcgc 18432
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 15294 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 15235
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 15234 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 15181
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 15180 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 15121
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 15120 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 15061
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 15060 gccgactgcgccgtcgc 15044
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 22284 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 22343
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 22344 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 22397
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 22398 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 22457
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 22458 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 22517
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 22518 accgactgcgccgtcgc 22534
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 11080 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 11021
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 11020 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 10961
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 10960 atgcccatcatgggcggcgc 10941
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 42780081 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 42780140
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42780141 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42780200
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42780201 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 42780260
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42780261 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42780304
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 42773930 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 42773871
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42773870 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42773811
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42773810 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 42773751
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42773750 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42773707
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 42778031 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 42777972
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42777971 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42777912
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 42777911 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 42777852
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42777851 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42777808
Score = 226 bits (114), Expect = 2e-056
Identities = 177/198 (89%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 42784259 tgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaagaag 42784318
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
|| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 42784319 gagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcggc 42784378
Query: 448 aagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttc 507
|| | |||||||||||||| || |||||||||||||||||| | || |||||| |||||
Sbjct: 42784379 aaccacaacccggccatgaagcgtgacttcacctggatccagtccctcggcatcagcttc 42784438
Query: 508 gcgcaccaccacctctac 525
| |||||| |||||||
Sbjct: 42784439 ggcgaccaccgcctctac 42784456
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 42777612 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 42777553
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 42777552 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 42777499
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42777498 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 42777439
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 42777438 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 42777379
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 42777378 accgactgcgccgtcgc 42777362
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 42780500 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 42780559
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 42780560 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 42780613
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42780614 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 42780673
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 42780674 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 42780733
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 42780734 gccgactgcgccgtcgc 42780750
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 42773511 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 42773452
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 42773451 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 42773398
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42773397 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 42773338
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 42773337 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 42773278
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 42773277 accgactgcgccgtcgc 42773261
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 42784715 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 42784774
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 42784775 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 42784834
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 42784835 atgcccatcatgggcggcgc 42784854
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 2408375 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 2408434
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 2408435 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 2408494
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2408495 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 2408554
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 2408555 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 2408598
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 2402224 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 2402165
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 2402164 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 2402105
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2402104 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 2402045
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 2402044 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 2402001
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 2406325 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 2406266
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 2406265 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 2406206
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 2406205 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 2406146
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 2406145 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 2406102
Score = 226 bits (114), Expect = 2e-056
Identities = 177/198 (89%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 2412553 tgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaagaag 2412612
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
|| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 2412613 gagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcggc 2412672
Query: 448 aagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttc 507
|| | |||||||||||||| || |||||||||||||||||| | || |||||| |||||
Sbjct: 2412673 aaccacaacccggccatgaagcgtgacttcacctggatccagtccctcggcatcagcttc 2412732
Query: 508 gcgcaccaccacctctac 525
| |||||| |||||||
Sbjct: 2412733 ggcgaccaccgcctctac 2412750
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 2405906 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 2405847
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 2405846 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 2405793
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 2405792 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 2405733
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 2405732 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 2405673
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 2405672 accgactgcgccgtcgc 2405656
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 2408794 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 2408853
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 2408854 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 2408907
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 2408908 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 2408967
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 2408968 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 2409027
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 2409028 gccgactgcgccgtcgc 2409044
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 2401805 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 2401746
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 2401745 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 2401692
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 2401691 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 2401632
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 2401631 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 2401572
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 2401571 accgactgcgccgtcgc 2401555
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 2413009 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 2413068
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 2413069 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 2413128
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 2413129 atgcccatcatgggcggcgc 2413148
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1656_A11
Length = 148887
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 32176 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 32235
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 32236 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 32295
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 32296 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 32355
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 32356 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 32399
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 26025 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 25966
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 25965 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 25906
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 25905 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 25846
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 25845 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 25802
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 30126 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 30067
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 30066 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 30007
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 30006 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 29947
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 29946 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 29903
Score = 226 bits (114), Expect = 2e-056
Identities = 177/198 (89%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 36354 tgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaagaag 36413
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
|| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 36414 gagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcggc 36473
Query: 448 aagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttc 507
|| | |||||||||||||| || |||||||||||||||||| | || |||||| |||||
Sbjct: 36474 aaccacaacccggccatgaagcgtgacttcacctggatccagtccctcggcatcagcttc 36533
Query: 508 gcgcaccaccacctctac 525
| |||||| |||||||
Sbjct: 36534 ggcgaccaccgcctctac 36551
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 29707 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 29648
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 29647 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 29594
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 29593 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 29534
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 29533 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 29474
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 29473 accgactgcgccgtcgc 29457
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 32595 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 32654
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 32655 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 32708
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 32709 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 32768
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 32769 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 32828
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 32829 gccgactgcgccgtcgc 32845
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 25606 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 25547
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 25546 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 25493
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 25492 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 25433
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 25432 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 25373
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 25372 accgactgcgccgtcgc 25356
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 36810 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 36869
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 36870 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 36929
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 36930 atgcccatcatgggcggcgc 36949
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 16890124 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 16890183
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 16890184 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 16890243
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16890244 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 16890303
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 16890304 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 16890347
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 16883972 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 16883913
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 16883912 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 16883853
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16883852 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 16883793
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 16883792 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 16883749
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 16888074 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 16888015
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 16888014 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 16887955
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 16887954 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 16887895
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 16887894 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 16887851
Score = 228 bits (115), Expect = 6e-057
Identities = 187/211 (88%)
Strand = Plus / Plus
Query: 315 tcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggcaacaacttctactt 374
||||||| ||| |||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 16894288 tcccggcacgtcgtgcggcgacccacggttcaccggcgccgacggcaacaccttctactt 16894347
Query: 375 ccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccctccacatcaacgc 434
||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 16894348 ccacggcaagaaggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgc 16894407
Query: 435 gcacttcatcggcaagcgcaacccggccatgagccgcgacttcacctggatccaggcgct 494
|||||||||||||| | |||||||||||||| || |||||||||||||||||| | ||
Sbjct: 16894408 ccacttcatcggcaaccacaacccggccatgaagcgtgacttcacctggatccagtccct 16894467
Query: 495 gggcatccgcttcgcgcaccaccacctctac 525
|||||| |||||| |||||| |||||||
Sbjct: 16894468 cggcatcagcttcggcgaccaccgcctctac 16894498
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 16887655 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 16887596
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 16887595 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 16887542
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 16887541 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 16887482
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 16887481 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 16887422
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 16887421 accgactgcgccgtcgc 16887405
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 16890543 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 16890602
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 16890603 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 16890656
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 16890657 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 16890716
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 16890717 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 16890776
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 16890777 gccgactgcgccgtcgc 16890793
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 16883553 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 16883494
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 16883493 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 16883440
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 16883439 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 16883380
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 16883379 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 16883320
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 16883319 accgactgcgccgtcgc 16883303
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 16894757 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 16894816
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 16894817 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 16894876
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 16894877 atgcccatcatgggcggcgc 16894896
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 42091845 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 42091904
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42091905 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42091964
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42091965 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 42092024
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42092025 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42092068
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 42085693 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 42085634
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42085633 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42085574
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42085573 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 42085514
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42085513 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42085470
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 42089795 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 42089736
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42089735 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42089676
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 42089675 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 42089616
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42089615 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42089572
Score = 228 bits (115), Expect = 6e-057
Identities = 187/211 (88%)
Strand = Plus / Plus
Query: 315 tcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggcaacaacttctactt 374
||||||| ||| |||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 42096009 tcccggcacgtcgtgcggcgacccacggttcaccggcgccgacggcaacaccttctactt 42096068
Query: 375 ccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccctccacatcaacgc 434
||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 42096069 ccacggcaagaaggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgc 42096128
Query: 435 gcacttcatcggcaagcgcaacccggccatgagccgcgacttcacctggatccaggcgct 494
|||||||||||||| | |||||||||||||| || |||||||||||||||||| | ||
Sbjct: 42096129 ccacttcatcggcaaccacaacccggccatgaagcgtgacttcacctggatccagtccct 42096188
Query: 495 gggcatccgcttcgcgcaccaccacctctac 525
|||||| |||||| |||||| |||||||
Sbjct: 42096189 cggcatcagcttcggcgaccaccgcctctac 42096219
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 42089376 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 42089317
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 42089316 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 42089263
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42089262 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 42089203
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 42089202 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 42089143
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 42089142 accgactgcgccgtcgc 42089126
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 42092264 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 42092323
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 42092324 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 42092377
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42092378 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 42092437
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 42092438 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 42092497
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 42092498 gccgactgcgccgtcgc 42092514
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 42085274 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 42085215
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 42085214 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 42085161
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42085160 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 42085101
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 42085100 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 42085041
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 42085040 accgactgcgccgtcgc 42085024
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 42096478 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 42096537
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 42096538 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 42096597
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 42096598 atgcccatcatgggcggcgc 42096617
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 309 bits (156), Expect = 2e-081
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 42699411 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 42699470
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42699471 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42699530
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42699531 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 42699590
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42699591 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42699634
Score = 301 bits (152), Expect = 5e-079
Identities = 206/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| ||||||||||| ||||||||||| || ||||| |||| ||||||||
Sbjct: 42693260 tgtgcgacttctaccccggcgtgtcgtgcggcgacccgcggttcaccggcggcgacggca 42693201
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42693200 acaacttctactttcacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42693141
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42693140 tccacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgcgacttcacct 42693081
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42693080 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42693037
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Minus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 42697361 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 42697302
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 42697301 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 42697242
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 42697241 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 42697182
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 42697181 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 42697138
Score = 226 bits (114), Expect = 2e-056
Identities = 177/198 (89%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 42703589 tgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaagaag 42703648
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
|| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 42703649 gagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcggc 42703708
Query: 448 aagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttc 507
|| | |||||||||||||| || |||||||||||||||||| | || |||||| |||||
Sbjct: 42703709 aaccacaacccggccatgaagcgtgacttcacctggatccagtccctcggcatcagcttc 42703768
Query: 508 gcgcaccaccacctctac 525
| |||||| |||||||
Sbjct: 42703769 ggcgaccaccgcctctac 42703786
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 42696942 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 42696883
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 42696882 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 42696829
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42696828 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 42696769
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 42696768 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 42696709
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 42696708 accgactgcgccgtcgc 42696692
Score = 178 bits (90), Expect = 5e-042
Identities = 215/257 (83%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||| |||
Sbjct: 42699830 gccaacgtggtgcccatcaccgagcatgactcgcgcatccacaactatggcgtcaccgag 42699889
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 42699890 gaggacagc------ctcgctcacctcgacctcggcttcaagttctacgacctctccgac 42699943
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| || |||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42699944 gacgtccatggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 42700003
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| |||||||| ||||| || |||| || |||||||| ||||||||
Sbjct: 42700004 agcgccagcatgccggtcatgggcggcgcaccaagctacgtcgcctccgacatcttctcc 42700063
Query: 973 accgactgcgccgtcgc 989
||||||||||||||||
Sbjct: 42700064 gccgactgcgccgtcgc 42700080
Score = 155 bits (78), Expect = 7e-035
Identities = 212/257 (82%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct: 42692841 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactacggcgtcaccgag 42692782
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 42692781 gaggacagc------ctcgcccacctcgacctcggcttcaagttctacgacctctccgac 42692728
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
|| || || ||||| || ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 42692727 gatgtccatggcgtcctcggccagacctaccgctccgactacgtcaacaatctcagcgtc 42692668
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| || ||||| ||||| || |||| || ||| ||| ||||||||
Sbjct: 42692667 agcgccagcatgccggtgatgggcggcgctcccagctacgtcgtctctgacatcttctcc 42692608
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 42692607 accgactgcgccgtcgc 42692591
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 42704045 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 42704104
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 42704105 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 42704164
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 42704165 atgcccatcatgggcggcgc 42704184
>ref|NM_189425.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 951
Score = 293 bits (148), Expect = 1e-076
Identities = 205/224 (91%)
Strand = Plus / Plus
Query: 302 tgtgcgacttctatcccggcgtgtcctgcggcgacccacgcttcacgggcgccgacggca 361
||||||||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||
Sbjct: 230 tgtgcgacttctacccgggcgtgtcgtgcggcgaccctcgcttcaccggcggcgacggca 289
Query: 362 acaacttctacttccacggcaagaaggaccgggacttctgcatcgtctccgacgccgccc 421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 290 acaacttctacttccacggcaagaaggaccacgacttctgcatcgtctccgacgccgacc 349
Query: 422 tccacatcaacgcgcacttcatcggcaagcgcaacccggccatgagccgcgacttcacct 481
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 350 tgcacatcaacgcccacttcatcggcaagcgcaaccccaccatgagccgtgacttcacct 409
Query: 482 ggatccaggcgctgggcatccgcttcgcgcaccaccacctctac 525
|||||||||| || |||||||||||||| |||||| |||||||
Sbjct: 410 ggatccaggccctcggcatccgcttcgccgaccaccgcctctac 453
Score = 194 bits (98), Expect = 8e-047
Identities = 217/257 (84%), Gaps = 6/257 (2%)
Strand = Plus / Plus
Query: 733 gccagcgtagtgcccatcaccgccgaggactcgcggatccacaactacggcgtcagggag 792
|||| ||| ||||||||||||| ||||||| || ||||||||||| ||||||| |||
Sbjct: 649 gccaacgtggtgcccatcaccgagcaggactcccgcatccacaactatggcgtcaccgag 708
Query: 793 gacgacggcgacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgac 852
|| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 709 gaggacagc------ctcgctcacctcgacatcggcttcaagttctacgacctctccgac 762
Query: 853 gacgtgcacggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtc 912
||||| ||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||
Sbjct: 763 gacgtccacggcgtgctcggccagacctaccgctccgactacgtcaacaagctcagcgtc 822
Query: 913 acatccaacatgcccgtcatgggaggcgcgccggactacctctcctccgacctcttctcc 972
| ||| |||||| ||||||| ||||||||| |||| || |||||||| ||||||||
Sbjct: 823 agcgccagcatgccggtcatggacggcgcgccgagctacgtcgcctccgacatcttctcc 882
Query: 973 accgactgcgccgtcgc 989
|||||||||||||||||
Sbjct: 883 accgactgcgccgtcgc 899
>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0068N01, complete sequence
Length = 152233
Score = 278 bits (140), Expect = 7e-072
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 285 ctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgctt 344
||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 39994 ctgcaagaccttctgcctctgcgacttctacccgggcgtctcctgcggcgacccccgctt 40053
Query: 345 cacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcat 404
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 40054 caccggcggcgacggcaacaacttctacttccacggcaagaaggaccgcgacttctgcct 40113
Query: 405 cgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggccat 464
| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 40114 cctctccgacgccgccctccacgtcaacgcccacttcatcggcaagcgcaacgccgccat 40173
Query: 465 gagccgcgacttcacctggatccaggcgctgggcatccgcttcg 508
| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 40174 gtcccgcgacttcacctggatccaggcgctcggcgtcctcttcg 40217
Score = 204 bits (103), Expect = 8e-050
Identities = 300/366 (81%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 630 cggcgcgcgctggtccccgcccacggcgccggcgctgtccgtcacccgcaccgcgcgcgt 689
||||||||||||||| ||||| || |||||||||||||| || |||||||||| |
Sbjct: 40333 cggcgcgcgctggtcgccgccgggagccccggcgctgtccgtgacgcgcaccgcgccggc 40392
Query: 690 caacaccgtcgtcgtcgagctcaggggcgccttccgcatcgtcgccagcgtagtgcccat 749
||| ||| || || |||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 40393 caatggcgtggtggtggagctccggggcgtgttccgcatcgtggccagcgcggtgcccat 40452
Query: 750 caccgccgaggactcgcggatccacaactacggcgtcagggaggacgacggcgacaccct 809
||| ||||| ||||| |||||||||||||||| | ||||| |||| |||
Sbjct: 40453 cacgcgggaggagtcgcgcgcccacaactacggcgtc------gccgacgacgactgcct 40506
Query: 810 cgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgct 869
|| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct: 40507 cgtccacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgct 40566
Query: 870 gggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgt 929
||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 40567 cggccagacctaccgctccgactacgtcaacaccctcaacgtcacctccaacatgcccgt 40626
Query: 930 catgggaggcgcgccggactacctctcctccgacctcttctccaccgactgcgccgtcgc 989
|||||| ||||| | ||| |||| || ||| |||||| |||||||||||||||||||
Sbjct: 40627 catgggcggcgccgccaacttcctcaccaccgggctcttcgccaccgactgcgccgtcgc 40686
Query: 990 acgctt 995
|||||
Sbjct: 40687 tcgctt 40692
>gb|AACV01010747.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010747, whole
genome shotgun sequence
Length = 81998
Score = 278 bits (140), Expect = 7e-072
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 285 ctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgctt 344
||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 3049 ctgcaagaccttctgcctctgcgacttctacccgggcgtctcctgcggcgacccccgctt 3108
Query: 345 cacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcat 404
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 3109 caccggcggcgacggcaacaacttctacttccacggcaagaaggaccgcgacttctgcct 3168
Query: 405 cgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggccat 464
| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 3169 cctctccgacgccgccctccacgtcaacgcccacttcatcggcaagcgcaacgccgccat 3228
Query: 465 gagccgcgacttcacctggatccaggcgctgggcatccgcttcg 508
| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 3229 gtcccgcgacttcacctggatccaggcgctcggcgtcctcttcg 3272
Score = 204 bits (103), Expect = 8e-050
Identities = 300/366 (81%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 630 cggcgcgcgctggtccccgcccacggcgccggcgctgtccgtcacccgcaccgcgcgcgt 689
||||||||||||||| ||||| || |||||||||||||| || |||||||||| |
Sbjct: 3388 cggcgcgcgctggtcgccgccgggagccccggcgctgtccgtgacgcgcaccgcgccggc 3447
Query: 690 caacaccgtcgtcgtcgagctcaggggcgccttccgcatcgtcgccagcgtagtgcccat 749
||| ||| || || |||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 3448 caatggcgtggtggtggagctccggggcgtgttccgcatcgtggccagcgcggtgcccat 3507
Query: 750 caccgccgaggactcgcggatccacaactacggcgtcagggaggacgacggcgacaccct 809
||| ||||| ||||| |||||||||||||||| | ||||| |||| |||
Sbjct: 3508 cacgcgggaggagtcgcgcgcccacaactacggcgtc------gccgacgacgactgcct 3561
Query: 810 cgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgct 869
|| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct: 3562 cgtccacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgct 3621
Query: 870 gggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgt 929
||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 3622 cggccagacctaccgctccgactacgtcaacaccctcaacgtcacctccaacatgcccgt 3681
Query: 930 catgggaggcgcgccggactacctctcctccgacctcttctccaccgactgcgccgtcgc 989
|||||| ||||| | ||| |||| || ||| |||||| |||||||||||||||||||
Sbjct: 3682 catgggcggcgccgccaacttcctcaccaccgggctcttcgccaccgactgcgccgtcgc 3741
Query: 990 acgctt 995
|||||
Sbjct: 3742 tcgctt 3747
>ref|NT_079870.2| Oryza sativa (japonica cultivar-group)
Length = 867822
Score = 278 bits (140), Expect = 7e-072
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 285 ctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgctt 344
||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 378347 ctgcaagaccttctgcctctgcgacttctacccgggcgtctcctgcggcgacccccgctt 378406
Query: 345 cacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcat 404
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 378407 caccggcggcgacggcaacaacttctacttccacggcaagaaggaccgcgacttctgcct 378466
Query: 405 cgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggccat 464
| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 378467 cctctccgacgccgccctccacgtcaacgcccacttcatcggcaagcgcaacgccgccat 378526
Query: 465 gagccgcgacttcacctggatccaggcgctgggcatccgcttcg 508
| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 378527 gtcccgcgacttcacctggatccaggcgctcggcgtcctcttcg 378570
Score = 204 bits (103), Expect = 8e-050
Identities = 300/366 (81%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 630 cggcgcgcgctggtccccgcccacggcgccggcgctgtccgtcacccgcaccgcgcgcgt 689
||||||||||||||| ||||| || |||||||||||||| || |||||||||| |
Sbjct: 378686 cggcgcgcgctggtcgccgccgggagccccggcgctgtccgtgacgcgcaccgcgccggc 378745
Query: 690 caacaccgtcgtcgtcgagctcaggggcgccttccgcatcgtcgccagcgtagtgcccat 749
||| ||| || || |||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 378746 caatggcgtggtggtggagctccggggcgtgttccgcatcgtggccagcgcggtgcccat 378805
Query: 750 caccgccgaggactcgcggatccacaactacggcgtcagggaggacgacggcgacaccct 809
||| ||||| ||||| |||||||||||||||| | ||||| |||| |||
Sbjct: 378806 cacgcgggaggagtcgcgcgcccacaactacggcgtc------gccgacgacgactgcct 378859
Query: 810 cgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgct 869
|| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct: 378860 cgtccacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgct 378919
Query: 870 gggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgt 929
||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 378920 cggccagacctaccgctccgactacgtcaacaccctcaacgtcacctccaacatgcccgt 378979
Query: 930 catgggaggcgcgccggactacctctcctccgacctcttctccaccgactgcgccgtcgc 989
|||||| ||||| | ||| |||| || ||| |||||| |||||||||||||||||||
Sbjct: 378980 catgggcggcgccgccaacttcctcaccaccgggctcttcgccaccgactgcgccgtcgc 379039
Query: 990 acgctt 995
|||||
Sbjct: 379040 tcgctt 379045
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028
genomic scaffold, whole genome shotgun sequence
Length = 7678539
Score = 278 bits (140), Expect = 7e-072
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 285 ctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgctt 344
||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 369084 ctgcaagaccttctgcctctgcgacttctacccgggcgtctcctgcggcgacccccgctt 369143
Query: 345 cacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcat 404
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 369144 caccggcggcgacggcaacaacttctacttccacggcaagaaggaccgcgacttctgcct 369203
Query: 405 cgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggccat 464
| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 369204 cctctccgacgccgccctccacgtcaacgcccacttcatcggcaagcgcaacgccgccat 369263
Query: 465 gagccgcgacttcacctggatccaggcgctgggcatccgcttcg 508
| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 369264 gtcccgcgacttcacctggatccaggcgctcggcgtcctcttcg 369307
Score = 204 bits (103), Expect = 8e-050
Identities = 300/366 (81%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 630 cggcgcgcgctggtccccgcccacggcgccggcgctgtccgtcacccgcaccgcgcgcgt 689
||||||||||||||| ||||| || |||||||||||||| || |||||||||| |
Sbjct: 369423 cggcgcgcgctggtcgccgccgggagccccggcgctgtccgtgacgcgcaccgcgccggc 369482
Query: 690 caacaccgtcgtcgtcgagctcaggggcgccttccgcatcgtcgccagcgtagtgcccat 749
||| ||| || || |||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 369483 caatggcgtggtggtggagctccggggcgtgttccgcatcgtggccagcgcggtgcccat 369542
Query: 750 caccgccgaggactcgcggatccacaactacggcgtcagggaggacgacggcgacaccct 809
||| ||||| ||||| |||||||||||||||| | ||||| |||| |||
Sbjct: 369543 cacgcgggaggagtcgcgcgcccacaactacggcgtc------gccgacgacgactgcct 369596
Query: 810 cgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgct 869
|| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct: 369597 cgtccacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgct 369656
Query: 870 gggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgt 929
||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 369657 cggccagacctaccgctccgactacgtcaacaccctcaacgtcacctccaacatgcccgt 369716
Query: 930 catgggaggcgcgccggactacctctcctccgacctcttctccaccgactgcgccgtcgc 989
|||||| ||||| | ||| |||| || ||| |||||| |||||||||||||||||||
Sbjct: 369717 catgggcggcgccgccaacttcctcaccaccgggctcttcgccaccgactgcgccgtcgc 369776
Query: 990 acgctt 995
|||||
Sbjct: 369777 tcgctt 369782
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 278 bits (140), Expect = 7e-072
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 285 ctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgctt 344
||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 369084 ctgcaagaccttctgcctctgcgacttctacccgggcgtctcctgcggcgacccccgctt 369143
Query: 345 cacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcat 404
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 369144 caccggcggcgacggcaacaacttctacttccacggcaagaaggaccgcgacttctgcct 369203
Query: 405 cgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggccat 464
| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 369204 cctctccgacgccgccctccacgtcaacgcccacttcatcggcaagcgcaacgccgccat 369263
Query: 465 gagccgcgacttcacctggatccaggcgctgggcatccgcttcg 508
| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 369264 gtcccgcgacttcacctggatccaggcgctcggcgtcctcttcg 369307
Score = 204 bits (103), Expect = 8e-050
Identities = 300/366 (81%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 630 cggcgcgcgctggtccccgcccacggcgccggcgctgtccgtcacccgcaccgcgcgcgt 689
||||||||||||||| ||||| || |||||||||||||| || |||||||||| |
Sbjct: 369423 cggcgcgcgctggtcgccgccgggagccccggcgctgtccgtgacgcgcaccgcgccggc 369482
Query: 690 caacaccgtcgtcgtcgagctcaggggcgccttccgcatcgtcgccagcgtagtgcccat 749
||| ||| || || |||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 369483 caatggcgtggtggtggagctccggggcgtgttccgcatcgtggccagcgcggtgcccat 369542
Query: 750 caccgccgaggactcgcggatccacaactacggcgtcagggaggacgacggcgacaccct 809
||| ||||| ||||| |||||||||||||||| | ||||| |||| |||
Sbjct: 369543 cacgcgggaggagtcgcgcgcccacaactacggcgtc------gccgacgacgactgcct 369596
Query: 810 cgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgct 869
|| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct: 369597 cgtccacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgct 369656
Query: 870 gggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgt 929
||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 369657 cggccagacctaccgctccgactacgtcaacaccctcaacgtcacctccaacatgcccgt 369716
Query: 930 catgggaggcgcgccggactacctctcctccgacctcttctccaccgactgcgccgtcgc 989
|||||| ||||| | ||| |||| || ||| |||||| |||||||||||||||||||
Sbjct: 369717 catgggcggcgccgccaacttcctcaccaccgggctcttcgccaccgactgcgccgtcgc 369776
Query: 990 acgctt 995
|||||
Sbjct: 369777 tcgctt 369782
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 26986068 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccacggcgt 26986127
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 26986128 gctgggccagac 26986139
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| || |||||
Sbjct: 26990839 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccatggcgt 26990898
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 26990899 gctgggccagac 26990910
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 349 ggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcatcgtc 408
|||| ||||||||||| ||||||||||||||| ||||| ||||||||| | ||
Sbjct: 26985631 ggcggcgacggcaacacgttctacttccacggccgccgagaccgcgacttctgcctgctc 26985690
Query: 409 tccgacgccgccctccacatcaacgcgcacttcatcggcaa 449
|||||||| ||| |||||||||| ||||||||||||||
Sbjct: 26985691 tccgacgcaaacctgcacatcaacggccacttcatcggcaa 26985731
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttgc 118
||||||||||||||||||||||||
Sbjct: 25167002 tggcggcggcggcggcgttgttgc 25167025
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
complete sequence
Length = 29737217
Score = 278 bits (140), Expect = 7e-072
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 285 ctgcaagacattctgcttgtgcgacttctatcccggcgtgtcctgcggcgacccacgctt 344
||||||||| |||||| | ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 378347 ctgcaagaccttctgcctctgcgacttctacccgggcgtctcctgcggcgacccccgctt 378406
Query: 345 cacgggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcat 404
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 378407 caccggcggcgacggcaacaacttctacttccacggcaagaaggaccgcgacttctgcct 378466
Query: 405 cgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgcaacccggccat 464
| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||
Sbjct: 378467 cctctccgacgccgccctccacgtcaacgcccacttcatcggcaagcgcaacgccgccat 378526
Query: 465 gagccgcgacttcacctggatccaggcgctgggcatccgcttcg 508
| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 378527 gtcccgcgacttcacctggatccaggcgctcggcgtcctcttcg 378570
Score = 204 bits (103), Expect = 8e-050
Identities = 300/366 (81%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 630 cggcgcgcgctggtccccgcccacggcgccggcgctgtccgtcacccgcaccgcgcgcgt 689
||||||||||||||| ||||| || |||||||||||||| || |||||||||| |
Sbjct: 378686 cggcgcgcgctggtcgccgccgggagccccggcgctgtccgtgacgcgcaccgcgccggc 378745
Query: 690 caacaccgtcgtcgtcgagctcaggggcgccttccgcatcgtcgccagcgtagtgcccat 749
||| ||| || || |||||| |||||| ||||||||||| ||||||| ||||||||
Sbjct: 378746 caatggcgtggtggtggagctccggggcgtgttccgcatcgtggccagcgcggtgcccat 378805
Query: 750 caccgccgaggactcgcggatccacaactacggcgtcagggaggacgacggcgacaccct 809
||| ||||| ||||| |||||||||||||||| | ||||| |||| |||
Sbjct: 378806 cacgcgggaggagtcgcgcgcccacaactacggcgtc------gccgacgacgactgcct 378859
Query: 810 cgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgct 869
|| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||
Sbjct: 378860 cgtccacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgct 378919
Query: 870 gggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaacatgcccgt 929
||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 378920 cggccagacctaccgctccgactacgtcaacaccctcaacgtcacctccaacatgcccgt 378979
Query: 930 catgggaggcgcgccggactacctctcctccgacctcttctccaccgactgcgccgtcgc 989
|||||| ||||| | ||| |||| || ||| |||||| |||||||||||||||||||
Sbjct: 378980 catgggcggcgccgccaacttcctcaccaccgggctcttcgccaccgactgcgccgtcgc 379039
Query: 990 acgctt 995
|||||
Sbjct: 379040 tcgctt 379045
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| || |||||
Sbjct: 27263295 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccatggcgt 27263354
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 27263355 gctgggccagac 27263366
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttgc 118
||||||||||||||||||||||||
Sbjct: 25436203 tggcggcggcggcggcgttgttgc 25436226
>ref|NM_189428.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1026
Score = 226 bits (114), Expect = 2e-056
Identities = 177/198 (89%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 tgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaagaag 384
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
|| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 385 gagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcggc 444
Query: 448 aagcgcaacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttc 507
|| | |||||||||||||| || |||||||||||||||||| | || |||||| |||||
Sbjct: 445 aaccacaacccggccatgaagcgtgacttcacctggatccagtccctcggcatcagcttc 504
Query: 508 gcgcaccaccacctctac 525
| |||||| |||||||
Sbjct: 505 ggcgaccaccgcctctac 522
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 781 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 840
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 841 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 900
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 901 atgcccatcatgggcggcgc 920
>gb|BE039193.1|BE039193 OA01A11 OA Oryza sativa (japonica cultivar-group) cDNA 5' similar
to root cap protein 2, mRNA sequence
Length = 566
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 250 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 309
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 310 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 369
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 370 atgcccatcatgggcggcgc 389
>gb|CK738586.1|CK738586 OA01A11_SK.ab1 OA Oryza sativa (japonica cultivar-group) cDNA clone
OA01A11_SK.ab1 similar to root cap protein [Oryza sativa
(japonica, mRNA sequence
Length = 566
Score = 103 bits (52), Expect = 2e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 802 gacaccctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcac 861
|||||||||| |||||||||||||||| ||||||| ||| |||| ||| |||||| ||
Sbjct: 250 gacaccctcgtccacctcgacctcggctacaagttccacgccctctccggcgacgtcgac 309
Query: 862 ggcgtgctgggccagacctaccgcccggactacgtcaacagcctcaacgtcacatccaac 921
|||||||| |||||||| |||||||| ||||| |||||| |||||| |||| ||||
Sbjct: 310 ggcgtgctcggccagacttaccgccccacctacgccaacaggctcaacatcaccgccaag 369
Query: 922 atgcccgtcatgggaggcgc 941
|||||| ||||||| |||||
Sbjct: 370 atgcccatcatgggcggcgc 389
>dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E12, full
insert sequence
Length = 1747
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 1587 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 1528
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 1527 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 1468
Query: 448 aagcgc 453
||||||
Sbjct: 1467 aagcgc 1462
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 1114 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 1055
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 1054 cgtcggtcagacgtaccgctccgactacgtcaaca 1020
>ref|NT_107134.1| Oryza sativa (japonica cultivar-group)
Length = 568590
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 434029 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 434088
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 434089 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 434148
Query: 448 aagcgc 453
||||||
Sbjct: 434149 aagcgc 434154
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 434502 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 434561
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 434562 cgtcggtcagacgtaccgctccgactacgtcaaca 434596
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttg 117
|||||||||||||||||||||||
Sbjct: 39020 tggcggcggcggcggcgttgttg 39042
>gb|AACV01022354.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022354, whole
genome shotgun sequence
Length = 43101
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 13759 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 13818
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 13819 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 13878
Query: 448 aagcgc 453
||||||
Sbjct: 13879 aagcgc 13884
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 14233 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 14292
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 14293 cgtcggtcagacgtaccgctccgactacgtcaaca 14327
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 2201277 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 2201336
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 2201337 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 2201396
Query: 448 aagcgc 453
||||||
Sbjct: 2201397 aagcgc 2201402
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 2201751 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 2201810
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 2201811 cgtcggtcagacgtaccgctccgactacgtcaaca 2201845
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttg 117
|||||||||||||||||||||||
Sbjct: 1849823 tggcggcggcggcggcgttgttg 1849845
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 2503569 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 2503628
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 2503629 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 2503688
Query: 448 aagcgc 453
||||||
Sbjct: 2503689 aagcgc 2503694
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 2504043 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 2504102
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 2504103 cgtcggtcagacgtaccgctccgactacgtcaaca 2504137
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttg 117
|||||||||||||||||||||||
Sbjct: 2152115 tggcggcggcggcggcgttgttg 2152137
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 2362474 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 2362533
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 2362534 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 2362593
Query: 448 aagcgc 453
||||||
Sbjct: 2362594 aagcgc 2362599
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 2362947 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 2363006
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 2363007 cgtcggtcagacgtaccgctccgactacgtcaaca 2363041
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttg 117
|||||||||||||||||||||||
Sbjct: 1967465 tggcggcggcggcggcgttgttg 1967487
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19
map R1938, complete sequence
Length = 160847
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 138473 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 138532
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 138533 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 138592
Query: 448 aagcgc 453
||||||
Sbjct: 138593 aagcgc 138598
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 138946 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 139005
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 139006 cgtcggtcagacgtaccgctccgactacgtcaaca 139040
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0040B10 map R2918, complete sequence
Length = 149132
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 14616 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 14675
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 14676 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 14735
Query: 448 aagcgc 453
||||||
Sbjct: 14736 aagcgc 14741
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 15089 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 15148
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 15149 cgtcggtcagacgtaccgctccgactacgtcaaca 15183
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 99.6 bits (50), Expect = 3e-018
Identities = 107/126 (84%)
Strand = Plus / Plus
Query: 328 tgcggcgacccacgcttcacgggcgccgacggcaacaacttctacttccacggcaagaag 387
||||||||||| | |||| |||| |||||||||| |||||||||||| ||| || |
Sbjct: 2370255 tgcggcgacccgaggttcatcggcggcgacggcaacgccttctacttccatggccggagg 2370314
Query: 388 gaccgggacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggc 447
||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 2370315 gacgccgacttctgcgtcgtctccgaccgcgacctccacatcaacgcgcacttcatcggc 2370374
Query: 448 aagcgc 453
||||||
Sbjct: 2370375 aagcgc 2370380
Score = 69.9 bits (35), Expect = 3e-009
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||| ||| ||||||| |||||||||||||||
Sbjct: 2370728 cctcgcccacctcgacctggcgttcaagttcgacgcgctcaccggcgacgtgcacggcgt 2370787
Query: 867 gctgggccagacctaccgcccggactacgtcaaca 901
| || ||||| |||||| | |||||||||||||
Sbjct: 2370788 cgtcggtcagacgtaccgctccgactacgtcaaca 2370822
Score = 46.1 bits (23), Expect = 0.045
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttg 117
|||||||||||||||||||||||
Sbjct: 1975246 tggcggcggcggcggcgttgttg 1975268
>gb|AACV01012675.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012675, whole
genome shotgun sequence
Length = 13884
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1996 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccacggcgt 1937
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 1936 gctgggccagac 1925
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 349 ggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcatcgtc 408
|||| ||||||||||| ||||||||||||||| ||||| ||||||||| | ||
Sbjct: 2433 ggcggcgacggcaacacgttctacttccacggccgccgagaccgcgacttctgcctgctc 2374
Query: 409 tccgacgccgccctccacatcaacgcgcacttcatcggcaa 449
|||||||| ||| |||||||||| ||||||||||||||
Sbjct: 2373 tccgacgcaaacctgcacatcaacggccacttcatcggcaa 2333
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| ||||||||
Sbjct: 9685755 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccacggcgt 9685814
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 9685815 gctgggccagac 9685826
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| || |||||
Sbjct: 9690526 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccatggcgt 9690585
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 9690586 gctgggccagac 9690597
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 349 ggcgccgacggcaacaacttctacttccacggcaagaaggaccgggacttctgcatcgtc 408
|||| ||||||||||| ||||||||||||||| ||||| ||||||||| | ||
Sbjct: 9685318 ggcggcgacggcaacacgttctacttccacggccgccgagaccgcgacttctgcctgctc 9685377
Query: 409 tccgacgccgccctccacatcaacgcgcacttcatcggcaa 449
|||||||| ||| |||||||||| ||||||||||||||
Sbjct: 9685378 tccgacgcaaacctgcacatcaacggccacttcatcggcaa 9685418
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 95 tggcggcggcggcggcgttgttgc 118
||||||||||||||||||||||||
Sbjct: 7866689 tggcggcggcggcggcgttgttgc 7866712
>dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E01, full
insert sequence
Length = 1481
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 458 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 517
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 518 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 577
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 578 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 632
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 875 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 934
Query: 889 gactacgtca 898
||||||||||
Sbjct: 935 gactacgtca 944
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 773 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 832
Query: 781 ggc 783
|||
Sbjct: 833 ggc 835
>gb|AACV01009695.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009695, whole
genome shotgun sequence
Length = 9127
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 1076 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 1135
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 1136 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 1195
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 1196 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 1250
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 1493 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 1552
Query: 889 gactacgtca 898
||||||||||
Sbjct: 1553 gactacgtca 1562
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 1391 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 1450
Query: 781 ggc 783
|||
Sbjct: 1451 ggc 1453
>ref|XM_472395.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1068
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 373 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 432
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 433 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 492
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 493 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 547
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 849
Query: 889 gactacgtca 898
||||||||||
Sbjct: 850 gactacgtca 859
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 688 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 747
Query: 781 ggc 783
|||
Sbjct: 748 ggc 750
>ref|NT_107198.1| Oryza sativa (japonica cultivar-group)
Length = 632744
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 20580 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 20639
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 20640 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 20699
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 20700 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 20754
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 20997 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 21056
Query: 889 gactacgtca 898
||||||||||
Sbjct: 21057 gactacgtca 21066
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 20895 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 20954
Query: 781 ggc 783
|||
Sbjct: 20955 ggc 20957
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 10058511 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 10058570
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 10058571 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 10058630
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 10058631 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 10058685
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 10058928 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 10058987
Query: 889 gactacgtca 898
||||||||||
Sbjct: 10058988 gactacgtca 10058997
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 10058826 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 10058885
Query: 781 ggc 783
|||
Sbjct: 10058886 ggc 10058888
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 17405873 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 17405932
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 17405933 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 17405992
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 17405993 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 17406047
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 17406290 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 17406349
Query: 889 gactacgtca 898
||||||||||
Sbjct: 17406350 gactacgtca 17406359
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 17406188 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 17406247
Query: 781 ggc 783
|||
Sbjct: 17406248 ggc 17406250
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
complete sequence
Length = 143301
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 20580 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 20639
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 20640 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 20699
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 20700 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 20754
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 20997 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 21056
Query: 889 gactacgtca 898
||||||||||
Sbjct: 21057 gactacgtca 21066
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 20895 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 20954
Query: 781 ggc 783
|||
Sbjct: 20955 ggc 20957
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 93.7 bits (47), Expect = 2e-016
Identities = 143/175 (81%)
Strand = Plus / Plus
Query: 394 gacttctgcatcgtctccgacgccgccctccacatcaacgcgcacttcatcggcaagcgc 453
||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 20289947 gacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagcgc 20290006
Query: 454 aacccggccatgagccgcgacttcacctggatccaggcgctgggcatccgcttcgcgcac 513
||| |||| | || |||||||||||| | ||||| || ||||||||||||| |
Sbjct: 20290007 aacgcggcggcggcacgggacttcacctgggtgcaggccctcggcatccgcttcggcggc 20290066
Query: 514 caccacctctacgtcgccgcccagaggacgcccaggtgggacgccgccgccgacc 568
|||| ||||||| ||| || | |||||| ||||||||||||||||| |||||
Sbjct: 20290067 caccgcctctacctcggcgtcaggaggaccgtcaggtgggacgccgccgtcgacc 20290121
Score = 91.7 bits (46), Expect = 8e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 829 ttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggccagacctaccgcccg 888
|||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 20290364 ttcaagttctactccatcagcgccgacgtgcacggcgtgctgggccagacctaccgcccc 20290423
Query: 889 gactacgtca 898
||||||||||
Sbjct: 20290424 gactacgtca 20290433
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 721 ttccgcatcgtcgccagcgtagtgcccatcaccgccgaggactcgcggatccacaactac 780
|||||||||||||||| || |||||| |||| | ||||||||| |||||||| ||||
Sbjct: 20290262 ttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatccacggctac 20290321
Query: 781 ggc 783
|||
Sbjct: 20290322 ggc 20290324
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
complete sequence
Length = 191765
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| || |||||
Sbjct: 138263 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccatggcgt 138322
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 138323 gctgggccagac 138334
>gb|AACV01012676.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012676, whole
genome shotgun sequence
Length = 33360
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| || |||||
Sbjct: 30685 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccatggcgt 30626
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 30625 gctgggccagac 30614
>ref|NT_107220.1| Oryza sativa (japonica cultivar-group)
Length = 436435
Score = 87.7 bits (44), Expect = 1e-014
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 807 cctcgcgcacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgt 866
|||||| ||||||||||| | ||||||||||||| ||||||||||||||| || |||||
Sbjct: 295718 cctcgcccacctcgacctggcgttcaagttctacgccctcaccgacgacgtccatggcgt 295777
Query: 867 gctgggccagac 878
||||||||||||
Sbjct: 295778 gctgggccagac 295789
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
sequence
Length = 187707
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 159740 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 159681
Query: 874 cagac 878
|||||
Sbjct: 159680 cagac 159676
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 159850 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 159805
>gb|AACV01022143.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022143, whole
genome shotgun sequence
Length = 22978
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 10793 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 10852
Query: 874 cagac 878
|||||
Sbjct: 10853 cagac 10857
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 10683 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 10728
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 4077790 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 4077731
Query: 874 cagac 878
|||||
Sbjct: 4077730 cagac 4077726
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 4077900 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 4077855
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 10119590 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 10119531
Query: 874 cagac 878
|||||
Sbjct: 10119530 cagac 10119526
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 10119700 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 10119655
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 93 catggcggcggcggcggcgttg 114
||||||||||||||||||||||
Sbjct: 5789797 catggcggcggcggcggcgttg 5789776
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 20985384 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 20985325
Query: 874 cagac 878
|||||
Sbjct: 20985324 cagac 20985320
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 20985494 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 20985449
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 93 catggcggcggcggcggcgttg 114
||||||||||||||||||||||
Sbjct: 16655591 catggcggcggcggcggcgttg 16655570
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 22154796 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 22154737
Query: 874 cagac 878
|||||
Sbjct: 22154736 cagac 22154732
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 22154906 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 22154861
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 93 catggcggcggcggcggcgttg 114
||||||||||||||||||||||
Sbjct: 17845305 catggcggcggcggcggcgttg 17845284
>dbj|AB108421.1| Oryza sativa (japonica cultivar-group) transposon, AnacB14, complete
sequence
Length = 7551
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 5383 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 5442
Query: 874 cagac 878
|||||
Sbjct: 5443 cagac 5447
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 5273 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 5318
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 73.8 bits (37), Expect = 2e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 814 cacctcgacctcggcttcaagttctacgacctcaccgacgacgtgcacggcgtgctgggc 873
|||||||||||||||||||||||| | | |||||||||||||| || |||||||| |||
Sbjct: 22166859 cacctcgacctcggcttcaagttcgaggcgctcaccgacgacgtccatggcgtgctcggc 22166800
Query: 874 cagac 878
|||||
Sbjct: 22166799 cagac 22166795
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 706 gagctcaggggcgccttccgcatcgtcgccagcgtagtgcccatca 751
||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 22166969 gagctcaggggcgtgttccgcatcgtggccagcgcggtgcccatca 22166924
Score = 44.1 bits (22), Expect = 0.18
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 93 catggcggcggcggcggcgttg 114
||||||||||||||||||||||
Sbjct: 17854558 catggcggcggcggcggcgttg 17854537
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,163,052
Number of Sequences: 438736
Number of extensions: 4163052
Number of successful extensions: 215467
Number of sequences better than 0.5: 116
Number of HSP's better than 0.5 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 196109
Number of HSP's gapped (non-prelim): 19299
length of query: 1225
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1204
effective length of database: 2,791,206,460
effective search space: 3360612577840
effective search space used: 3360612577840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)