BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071601.1| Oryza sativa (japonica cultivar-group) cDNA... 281 3e-073
gb|CV729296.1|CV729296 FLO--02-B04.g1 Rice flower lambda ph... 274 7e-071
gb|CV733228.1|CV733228 FLO--08-A18.g1 Rice flower lambda ph... 274 7e-071
ref|XM_467790.1| Oryza sativa (japonica cultivar-group), mRNA 252 2e-064
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 224 5e-056
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 224 5e-056
gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) c... 224 5e-056
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 224 5e-056
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 224 5e-056
dbj|AP005848.3| Oryza sativa (japonica cultivar-group) geno... 202 2e-049
gb|AACV01005419.1| Oryza sativa (japonica cultivar-group) c... 202 2e-049
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 202 2e-049
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 202 2e-049
gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbar... 157 1e-035
gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbar... 157 1e-035
gb|AACV01021504.1| Oryza sativa (japonica cultivar-group) c... 157 1e-035
ref|NT_080066.1| Oryza sativa (japonica cultivar-group) chr... 157 1e-035
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 157 1e-035
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
ref|NM_196405.1| Oryza sativa (japonica cultivar-group) hyp... 155 4e-035
gb|CB683392.1|CB683392 OSJNEf11L08.f OSJNEf Oryza sativa (j... 151 7e-034
gb|AC126221.2| Oryza sativa (japonica cultivar-group) chrom... 151 7e-034
gb|AC144491.1| Oryza sativa (japonica cultivar-group) chrom... 151 7e-034
gb|AACV01005957.1| Oryza sativa (japonica cultivar-group) c... 151 7e-034
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 151 7e-034
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 151 7e-034
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 151 7e-034
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 151 7e-034
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 151 7e-034
gb|AQ273895.1|AQ273895 nbxb0031L04r CUGI Rice BAC Library O... 109 2e-021
gb|AU030987.1|AU030987 AU030987 Rice cDNA from immature lea... 84 1e-013
gb|AACV01019959.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|AACV01010560.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|XM_474070.1| Oryza sativa (japonica cultivar-group), p... 64 1e-007
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 64 1e-007
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 64 1e-007
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|C73165.1|C73165 C73165 Rice panicle at flowering stage O... 54 1e-004
gb|CB636145.1|CB636145 OSJNEa01E22.f OSJNEa Oryza sativa (j... 42 0.44
dbj|AP004633.1| Oryza sativa (japonica cultivar-group) chro... 42 0.44
dbj|AK068218.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.44
gb|AC103891.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|AACV01006154.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
gb|AACV01013568.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
dbj|AP003540.2| Oryza sativa (japonica cultivar-group) geno... 42 0.44
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 42 0.44
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|AACV01008393.1| Oryza sativa (japonica cultivar-group) c... 40 1.7
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 40 1.7
gb|CH401182.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.7
emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromoso... 40 1.7
emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromoso... 40 1.7
gb|AQ288090.1|AQ288090 nbxb0032E14r CUGI Rice BAC Library O... 38 6.8
gb|AQ365012.2|AQ365012 nbxb0062I13r CUGI Rice BAC Library O... 38 6.8
gb|AU030988.1|AU030988 AU030988 Rice cDNA from immature lea... 38 6.8
gb|AU197779.1|AU197779 AU197779 Rice mature leaf Oryza sati... 38 6.8
gb|AU225210.1|AU225210 AU225210 Oryza sativa Koshihikari pi... 38 6.8
gb|CB642790.1|CB642790 OSJNEb03C13.r OSJNEb Oryza sativa (j... 38 6.8
gb|CB648341.1|CB648341 OSJNEb11K21.r OSJNEb Oryza sativa (j... 38 6.8
gb|CB662170.1|CB662170 OSJNEd05P01.f OSJNEd Oryza sativa (j... 38 6.8
gb|CB665532.1|CB665532 OSJNEd12A07.r OSJNEd Oryza sativa (j... 38 6.8
gb|CB665911.1|CB665911 OSJNEd12J09.r OSJNEd Oryza sativa (j... 38 6.8
gb|CB666094.1|CB666094 OSJNEd12N10.r OSJNEd Oryza sativa (j... 38 6.8
gb|CB666883.1|CB666883 OSJNEd13P12.r OSJNEd Oryza sativa (j... 38 6.8
gb|CB675630.1|CB675630 OSJNEe11H20.r OSJNEe Oryza sativa (j... 38 6.8
gb|CB677097.1|CB677097 OSJNEe13L15.f OSJNEe Oryza sativa (j... 38 6.8
gb|CB677098.1|CB677098 OSJNEe13L15.r OSJNEe Oryza sativa (j... 38 6.8
gb|BP432979.1|BP432979 BP432979 Oryza sativa (japonica cult... 38 6.8
dbj|AK058890.1| Oryza sativa (japonica cultivar-group) cDNA... 38 6.8
dbj|AK064102.1| Oryza sativa (japonica cultivar-group) cDNA... 38 6.8
dbj|AK071250.1| Oryza sativa (japonica cultivar-group) cDNA... 38 6.8
dbj|AK105622.1| Oryza sativa (japonica cultivar-group) cDNA... 38 6.8
dbj|AK110474.1| Oryza sativa (japonica cultivar-group) cDNA... 38 6.8
gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, N... 38 6.8
gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19... 38 6.8
gb|AC099732.2| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
dbj|AP005399.3| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP005574.3| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP005804.2| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP005071.3| Oryza sativa (japonica cultivar-group) geno... 38 6.8
emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC O... 38 6.8
dbj|AP004756.2| Oryza sativa (japonica cultivar-group) geno... 38 6.8
gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 ... 38 6.8
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 38 6.8
dbj|AP005446.3| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP005308.3| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP003316.4| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP003216.3| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP003303.4| Oryza sativa (japonica cultivar-group) geno... 38 6.8
gb|AACV01001797.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01002846.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01003426.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01006147.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01006938.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01008035.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01014518.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01019456.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01020131.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01020207.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01021296.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01021297.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
gb|AACV01025343.1| Oryza sativa (japonica cultivar-group) c... 38 6.8
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 38 6.8
ref|NM_190263.1| Oryza sativa (japonica cultivar-group), p... 38 6.8
ref|NM_195906.1| Oryza sativa (japonica cultivar-group) put... 38 6.8
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 38 6.8
ref|XM_450955.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.8
ref|XM_464255.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.8
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 38 6.8
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 38 6.8
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 38 6.8
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 38 6.8
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 38 6.8
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.8
>dbj|AK071601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102C01, full
insert sequence
Length = 799
Score = 281 bits (142), Expect = 3e-073
Identities = 240/270 (88%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 371 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 312
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 311 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 252
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgc 674
|||| |||||||| |||||||||||||||||||||||| || |||| |||||||| | ||
Sbjct: 251 tgcacgtctccttcagcagcttcgtcgtcgacgcctggttggcgccgcggcggcgggagc 192
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgagaccgtcg 734
||||||| || | ||| ||| | ||||| ||||||||||||||||||||||| || | |
Sbjct: 191 tggggaggagggactggagcttggagatgagctcgttgatctcctcctccgacacggagg 132
Query: 735 acgcgcg-ggacctccggctcgacatcgtc 763
| ||||| |||||||||||||||||||||
Sbjct: 131 a-gcgcgacgacctccggctcgacatcgtc 103
>gb|CV729296.1|CV729296 FLO--02-B04.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--02-B04,
mRNA sequence
Length = 516
Score = 274 bits (138), Expect = 7e-071
Identities = 239/270 (88%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 389 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 330
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 329 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 270
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgc 674
|||| |||||||| |||||||||||||||||||||||| || |||| |||||||| | ||
Sbjct: 269 tgcacgtctccttcagcagcttcgtcgtcgacgcctggttggcgccgcggcggcgggagc 210
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgagaccgtcg 734
||||||| || | ||| ||| | ||||| |||||||||||||| |||||||| || | |
Sbjct: 209 tggggaggagggactggagcttggagatgagctcgttgatctcatcctccgacacggagg 150
Query: 735 acgcgcg-ggacctccggctcgacatcgtc 763
| ||||| |||||||||||||||||||||
Sbjct: 149 a-gcgcgacgacctccggctcgacatcgtc 121
>gb|CV733228.1|CV733228 FLO--08-A18.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-A18,
mRNA sequence
Length = 527
Score = 274 bits (138), Expect = 7e-071
Identities = 239/270 (88%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 417 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 358
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 357 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 298
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgc 674
|||| |||||||| |||||||| ||||||||||||||| || |||| |||||||| | ||
Sbjct: 297 tgcacgtctccttcagcagctttgtcgtcgacgcctggttggcgccgcggcggcgggagc 238
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgagaccgtcg 734
||||||| || | ||| ||| | ||||| ||||||||||||||||||||||| || | |
Sbjct: 237 tggggaggagggactggagcttggagatgagctcgttgatctcctcctccgacacggagg 178
Query: 735 acgcgcg-ggacctccggctcgacatcgtc 763
| ||||| |||||||||||||||||||||
Sbjct: 177 a-gcgcgacgacctccggctcgacatcgtc 149
>ref|XM_467790.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 267
Score = 252 bits (127), Expect = 2e-064
Identities = 205/231 (88%)
Strand = Plus / Minus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 262 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 203
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 202 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 143
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgctgg 677
| |||||||| ||||||||||||||||||||||||||| ||| || ||||| | | |||
Sbjct: 142 acgtctccttcagcagcttcgtcgtcgacgcctggctggagccgcgtcggcgtgagttgg 83
Query: 678 ggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 82 ggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 32
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 84513 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 84454
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 84453 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 84394
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 84393 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 84357
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 84106 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 84047
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 84046 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 83991
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 2263 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 2204
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2203 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 2144
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 2143 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 2107
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 1856 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 1797
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 1796 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 1741
>gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013344, whole
genome shotgun sequence
Length = 27471
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 23145 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 23204
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23205 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 23264
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 23265 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 23301
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 23552 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 23611
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 23612 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 23667
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 2259717 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 2259658
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2259657 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 2259598
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 2259597 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 2259561
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 2259310 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 2259251
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 2259250 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 2259195
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 6496359 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 6496300
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 6496299 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 6496240
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 6496239 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 6496203
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 6495952 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 6495893
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 6495892 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 6495837
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 6496359 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 6496300
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 6496299 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 6496240
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 6496239 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 6496203
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 6495952 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 6495893
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 6495892 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 6495837
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 acggagtagtacttaataatg 285
|||||||||||||||||||||
Sbjct: 9694539 acggagtagtacttaataatg 9694519
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 22781788 gccgccacggcggcgcgcg 22781770
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 224 bits (113), Expect = 5e-056
Identities = 146/157 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 6568137 gctagcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggcca 6568078
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || || | |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 6568077 tgaggtcggagagcctgtcgctgaggtcgtccacctcccggtgcaggctcttgatgtagc 6568018
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctg 651
|||| |||||||| |||||||||||||||||||||||
Sbjct: 6568017 tgcacgtctccttcagcagcttcgtcgtcgacgcctg 6567981
Score = 65.9 bits (33), Expect = 3e-008
Identities = 98/117 (83%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 648 cctggctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagct 707
||||| || |||| |||||||| | ||||||||| || | ||| ||| | ||||| ||||
Sbjct: 6567730 cctggttggcgccgcggcggcgggagctggggaggagggactggagcttggagatgagct 6567671
Query: 708 cgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcgacatcgtc 763
||||||||||||||||||| || | || ||||| |||||||||||||||||||||
Sbjct: 6567670 cgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcgacatcgtc 6567615
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 acggagtagtacttaataatg 285
|||||||||||||||||||||
Sbjct: 9709376 acggagtagtacttaataatg 9709356
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 23758163 gccgccacggcggcgcgcg 23758145
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0078N11
Length = 155168
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 78382 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 78441
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 78442 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 78501
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctg 651
| |||||||| |||||||||||||||||||||||
Sbjct: 78502 acgtctccttcagcagcttcgtcgtcgacgcctg 78535
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
|||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 78785 tggggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 78838
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 77932 gaggacacaactcgatccaaaccacac 77958
>gb|AACV01005419.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005419, whole
genome shotgun sequence
Length = 6043
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 1290 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 1349
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 1350 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 1409
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctg 651
| |||||||| |||||||||||||||||||||||
Sbjct: 1410 acgtctccttcagcagcttcgtcgtcgacgcctg 1443
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
|||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 1693 tggggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 1746
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 840 gaggacacaactcgatccaaaccacac 866
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 6607984 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 6608043
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 6608044 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 6608103
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctg 651
| |||||||| |||||||||||||||||||||||
Sbjct: 6608104 acgtctccttcagcagcttcgtcgtcgacgcctg 6608137
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
|||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 6608387 tggggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 6608440
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 6607534 gaggacacaactcgatccaaaccacac 6607560
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 18004133 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 18004192
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 18004193 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 18004252
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctg 651
| |||||||| |||||||||||||||||||||||
Sbjct: 18004253 acgtctccttcagcagcttcgtcgtcgacgcctg 18004286
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
|||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 18004536 tggggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 18004589
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 18003683 gaggacacaactcgatccaaaccacac 18003709
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 31457197 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 31457256
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 31457257 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 31457316
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctg 651
| |||||||| |||||||||||||||||||||||
Sbjct: 31457317 acgtctccttcagcagcttcgtcgtcgacgcctg 31457350
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
|||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 31457600 tggggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 31457653
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 31456747 gaggacacaactcgatccaaaccacac 31456773
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 3773469 ctcgttgatctgctcctccgaga 3773491
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 31442985 agcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatga 31443044
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || || |||||||||||||| ||||||||||||||| |||
Sbjct: 31443045 ggtcggacagccggtcgctgaggtcatccacctcccggtgaaggctcttgatgtagttgc 31443104
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctg 651
| |||||||| |||||||||||||||||||||||
Sbjct: 31443105 acgtctccttcagcagcttcgtcgtcgacgcctg 31443138
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgcagcctcgagataagctcgttgatctcctcctccgaga 728
|||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 31443388 tggggagcagcgactggagcttggagatgagctcgttgatttcctcctccgaga 31443441
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 31442535 gaggacacaactcgatccaaaccacac 31442561
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 3678811 ctcgttgatctgctcctccgaga 3678833
>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0044A10, from chromosome 10, complete sequence
Length = 169270
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 162565 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 162624
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 162625 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 162684
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 162685 tgcacatctccttcagcagcttcgtcg 162711
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0044A10, from chromosome 10, complete sequence
Length = 173374
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 53295 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 53354
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 53355 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 53414
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 53415 tgcacatctccttcagcagcttcgtcg 53441
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 566 aggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcc 625
||||| ||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 105068 aggcgctcgctgaggtcgtccacctcccggtgcaggctccggatgtagctgcacgtctcc 105009
Query: 626 t 626
|
Sbjct: 105008 t 105008
>gb|AACV01021504.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021504, whole
genome shotgun sequence
Length = 21962
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 8131 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 8072
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 8071 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 8012
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 8011 tgcacatctccttcagcagcttcgtcg 7985
>ref|NT_080066.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 1531814
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 1525109 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 1525168
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1525169 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 1525228
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 1525229 tgcacatctccttcagcagcttcgtcg 1525255
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 1401180 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 1401239
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1401240 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 1401299
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 1401300 tgcacatctccttcagcagcttcgtcg 1401326
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 12266974 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 12267033
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 12267034 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 12267093
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 12267094 tgcacatctccttcagcagcttcgtcg 12267120
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 9217097 ctgccgccacggcggcgcg 9217079
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 9215839 ctgccgccacggcggcgcg 9215821
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 13207046 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 13207105
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 13207106 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 13207165
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 13207166 tgcacatctccttcagcagcttcgtcg 13207192
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 566 aggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcc 625
||||| ||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 13258819 aggcgctcgctgaggtcgtccacctcccggtgcaggctccggatgtagctgcacgtctcc 13258760
Query: 626 t 626
|
Sbjct: 13258759 t 13258759
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 9877761 ctgccgccacggcggcgcg 9877743
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 157 bits (79), Expect = 1e-035
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||
Sbjct: 13214386 gctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgcca 13214445
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
|||| |||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 13214446 tgagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagc 13214505
Query: 615 tgcaggtctccttgagcagcttcgtcg 641
|||| ||||||| |||||||||||||
Sbjct: 13214506 tgcacatctccttcagcagcttcgtcg 13214532
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 566 aggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcc 625
||||| ||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 13266159 aggcgctcgctgaggtcgtccacctcccggtgcaggctccggatgtagctgcacgtctcc 13266100
Query: 626 t 626
|
Sbjct: 13266099 t 13266099
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 9883800 ctgccgccacggcggcgcg 9883782
>ref|NM_196405.1| Oryza sativa (japonica cultivar-group) hypothetical protein similar
to putative DNA binding proteins (OSJNBa0044A10.22),
mRNA
Length = 267
Score = 155 bits (78), Expect = 4e-035
Identities = 129/146 (88%)
Strand = Plus / Minus
Query: 496 ctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccat 555
|||||||||||||||||||||||| ||||| ||||||||| ||||||| | |||||
Sbjct: 267 ctagcggaggaggctgcggatgatgtcggcctgagggctgttgctgtccatggtcgccat 208
Query: 556 gaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagct 615
||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 207 gagctccgacagccgctcgctcaggtcgtccacttcccggtgcaggctcttgatgtagct 148
Query: 616 gcaggtctccttgagcagcttcgtcg 641
||| ||||||| |||||||||||||
Sbjct: 147 gcacatctccttcagcagcttcgtcg 122
>gb|CB683392.1|CB683392 OSJNEf11L08.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11L08 5', mRNA sequence
Length = 632
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 473 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 414
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 354
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 353 gtctccttgagcagcttcgacgccgacg 326
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 272 gagatgagctcgttgatctcctc 250
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0015N19, complete sequence
Length = 168430
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 34422 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 34363
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 34362 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 34303
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 34302 gtctccttgagcagcttcgacgccgacg 34275
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 33932 gagatgagctcgttgatctcctc 33910
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
complete sequence
Length = 132151
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 106573 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 106514
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 106513 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 106454
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 106453 gtctccttgagcagcttcgacgccgacg 106426
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 106083 gagatgagctcgttgatctcctc 106061
>gb|AACV01005957.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005957, whole
genome shotgun sequence
Length = 59938
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 14982 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 14923
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 14922 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 14863
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 14862 gtctccttgagcagcttcgacgccgacg 14835
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 14492 gagatgagctcgttgatctcctc 14470
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 2236517 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 2236458
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2236457 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 2236398
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 2236397 gtctccttgagcagcttcgacgccgacg 2236370
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 2236027 gagatgagctcgttgatctcctc 2236005
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 3773277 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 3773218
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3773217 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 3773158
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 3773157 gtctccttgagcagcttcgacgccgacg 3773130
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 7013912 cggccggccggacggacggac 7013932
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 6767189 tagcaaggaaacaaacaac 6767207
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 3772787 gagatgagctcgttgatctcctc 3772765
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 3965639 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 3965580
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3965579 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 3965520
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 3965519 gtctccttgagcagcttcgacgccgacg 3965492
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 7206274 cggccggccggacggacggac 7206294
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 33054775 atagcaaggaaacaaacaa 33054757
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 18125943 gcgcgcgctggggagcagc 18125961
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 6959551 tagcaaggaaacaaacaac 6959569
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 3965149 gagatgagctcgttgatctcctc 3965127
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 3828060 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 3828001
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3828000 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 3827941
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 3827940 gtctccttgagcagcttcgacgccgacg 3827913
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 6998680 cggccggccggacggacggac 6998700
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 32234706 atagcaaggaaacaaacaa 32234688
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 17320232 gcgcgcgctggggagcagc 17320250
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 6751702 tagcaaggaaacaaacaac 6751720
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 3827570 gagatgagctcgttgatctcctc 3827548
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 151 bits (76), Expect = 7e-034
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 500 cggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatgagg 559
||||||||||| |||||||||||||| |||||||||| |||||| | | ||||||
Sbjct: 3827949 cggaggaggctccggatgatctcggcctgcgggctgttgttgtccatcgtcgacatgagc 3827890
Query: 560 tccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcag 619
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3827889 tccgacagccggtcggacaggtcgtccacctcccggtgcaggctcttgatgtagctgcac 3827830
Query: 620 gtctccttgagcagcttcgtcgtcgacg 647
||||||||||||||||||| || |||||
Sbjct: 3827829 gtctccttgagcagcttcgacgccgacg 3827802
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 7000785 cggccggccggacggacggac 7000805
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 32144194 atagcaaggaaacaaacaa 32144176
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 17326691 gcgcgcgctggggagcagc 17326709
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 6752489 tagcaaggaaacaaacaac 6752507
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 3827459 gagatgagctcgttgatctcctc 3827437
>gb|AQ273895.1|AQ273895 nbxb0031L04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0031L04r, DNA sequence
Length = 826
Score = 109 bits (55), Expect = 2e-021
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 581 tcgtccacctcccggtgcaggctcttgatgtagctgcaggtctccttgagcagcttcgtc 640
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 396 tcgtccacctcccggtgcaggctcttgatgtagctgcacgtctccttgagcagcttcgac 337
Query: 641 gtcgacg 647
| |||||
Sbjct: 336 gccgacg 330
>gb|AU030987.1|AU030987 AU030987 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60530_1A, mRNA sequence
Length = 367
Score = 83.8 bits (42), Expect = 1e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 629 agcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgctggggagcagcgtc 688
|||||||||||||||||||| |||||| ||| | ||||| | | |||||||||||| |
Sbjct: 360 agcagcttcgtcgtcgacgcntggctggagccgcntcggcgtgagttggggagcagcgac 301
Query: 689 tgcagcctcgagataagctcgttgatctcctcctccgaga 728
|| ||| | ||||| ||||||||||| |||||||||||||
Sbjct: 300 tggagcttggagatgagctcgttgatttcctcctccgaga 261
>gb|AACV01019959.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019959, whole
genome shotgun sequence
Length = 13053
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 566 aggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcc 625
||||| ||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 4851 aggcgctcgctgaggtcgtccacctcccggtgcaggctccggatgtagctgcacgtctcc 4910
Query: 626 t 626
|
Sbjct: 4911 t 4911
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 566 aggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcc 625
||||| ||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 3785788 aggcgctcgctgaggtcgtccacctcccggtgcaggctccggatgtagctgcacgtctcc 3785729
Query: 626 t 626
|
Sbjct: 3785728 t 3785728
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 7079815 cgtcgacgcgcgggaccaccggc 7079837
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 6074605 tggccggccggccggacgg 6074587
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 566 aggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcc 625
||||| ||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 13259599 aggcgctcgctgaggtcgtccacctcccggtgcaggctccggatgtagctgcacgtctcc 13259540
Query: 626 t 626
|
Sbjct: 13259539 t 13259539
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 16553626 cgtcgacgcgcgggaccaccggc 16553648
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 15548416 tggccggccggccggacgg 15548398
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 caagttgacagatcgatcg 29
|||||||||||||||||||
Sbjct: 6140010 caagttgacagatcgatcg 6140028
>gb|AACV01010560.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010560, whole
genome shotgun sequence
Length = 6264
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 2701 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 2658
>ref|XM_474070.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 315
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 228 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 185
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 86775 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 86818
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 10367350 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 10367393
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 29511449 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 29511492
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 348166 aagagtggaagagagagaga 348185
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 51189 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 51232
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 86775 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 86818
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 583 gtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 32691754 gtccacctcctggtgcaggctcctgatgtagctgcacgtctcct 32691797
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 386786 aagagtggaagagagagaga 386805
>gb|C73165.1|C73165 C73165 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3194_1A, mRNA sequence
Length = 422
Score = 54.0 bits (27), Expect = 1e-004
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Minus
Query: 698 gagataagctcgttgatctcctcctccgagaccgtcgacgcgcg-ggacctccggctcga 756
||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||||
Sbjct: 338 gagatgagctcgttgatctcctcctccgacacggagga-gcgcgacgacctccggctcga 280
Query: 757 catcgtc 763
|||||||
Sbjct: 279 catcgtc 273
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 620 gtctccttgagcagcttcgtcgtcgacgc 648
|||||||| ||||||||||||||||||||
Sbjct: 410 gtctccttcagcagcttcgtcgtcgacgc 382
>gb|CB636145.1|CB636145 OSJNEa01E22.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa01E22 5', mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 416 cggccggccggacggacggac 396
>dbj|AP004633.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0666D11, ***
SEQUENCING IN PROGRESS ***
Length = 158390
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 265 acggagtagtacttaataatg 285
|||||||||||||||||||||
Sbjct: 109637 acggagtagtacttaataatg 109657
>dbj|AK068218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146E12, full
insert sequence
Length = 2439
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 425 cggccggccggacggacggac 405
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11,
complete sequence
Length = 123620
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 81580 cggccggccggacggacggac 81560
>gb|AACV01006154.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006154, whole
genome shotgun sequence
Length = 37778
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 29720 cggccggccggacggacggac 29740
>gb|AACV01013568.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013568, whole
genome shotgun sequence
Length = 25148
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 265 acggagtagtacttaataatg 285
|||||||||||||||||||||
Sbjct: 5439 acggagtagtacttaataatg 5459
>dbj|AP003540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0450D12
Length = 176431
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 acggagtagtacttaataatg 285
|||||||||||||||||||||
Sbjct: 167993 acggagtagtacttaataatg 167973
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacggac 490
|||||||||||||||||||||
Sbjct: 257075 cggccggccggacggacggac 257095
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 10097 tagcaaggaaacaaacaac 10115
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 acggagtagtacttaataatg 285
|||||||||||||||||||||
Sbjct: 1086887 acggagtagtacttaataatg 1086867
>gb|AACV01008393.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008393, whole
genome shotgun sequence
Length = 6540
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 1682 aagagtggaagagagagaga 1701
>ref|NT_107194.1| Oryza sativa (japonica cultivar-group)
Length = 2696338
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 386785 aagagtggaagagagagaga 386804
>gb|CH401182.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000019
genomic scaffold, whole genome shotgun sequence
Length = 1412315
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 348166 aagagtggaagagagagaga 348185
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
complete sequence
Length = 130249
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 25538 aagagtggaagagagagaga 25557
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23,
complete sequence
Length = 115972
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagagaga 229
||||||||||||||||||||
Sbjct: 71445 aagagtggaagagagagaga 71464
>gb|AQ288090.1|AQ288090 nbxb0032E14r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0032E14r, DNA sequence
Length = 336
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 698 gagataagctcgttgatctcctc 720
||||| |||||||||||||||||
Sbjct: 1 gagatgagctcgttgatctcctc 23
>gb|AQ365012.2|AQ365012 nbxb0062I13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0062I13r, DNA sequence
Length = 417
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 165 tggccggccggccggacgg 147
>gb|AU030988.1|AU030988 AU030988 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60530_2Z, mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 493 gaggacacaactcgatccaaaccacac 467
>gb|AU197779.1|AU197779 AU197779 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21384, mRNA sequence
Length = 401
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 116 ctcgttgatctgctcctccgaga 94
>gb|AU225210.1|AU225210 AU225210 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0153, mRNA sequence
Length = 158
Score = 38.2 bits (19), Expect = 6.8
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 66 gaggaaacaactcgatccagaccacac 92
||||| ||||||||||||| |||||||
Sbjct: 67 gaggacacaactcgatccaaaccacac 93
>gb|CB642790.1|CB642790 OSJNEb03C13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03C13 3', mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 523 ctcgttgatctgctcctccgaga 545
>gb|CB648341.1|CB648341 OSJNEb11K21.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11K21 3', mRNA sequence
Length = 731
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 523 ctcgttgatctgctcctccgaga 545
>gb|CB662170.1|CB662170 OSJNEd05P01.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05P01 5', mRNA sequence
Length = 373
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 291 ctcgttgatctgctcctccgaga 269
>gb|CB665532.1|CB665532 OSJNEd12A07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12A07 3', mRNA sequence
Length = 730
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 523 ctcgttgatctgctcctccgaga 545
>gb|CB665911.1|CB665911 OSJNEd12J09.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12J09 3', mRNA sequence
Length = 739
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 531 ctcgttgatctgctcctccgaga 553
>gb|CB666094.1|CB666094 OSJNEd12N10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12N10 3', mRNA sequence
Length = 667
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 547 ctcgttgatctgctcctccgaga 569
>gb|CB666883.1|CB666883 OSJNEd13P12.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13P12 3', mRNA sequence
Length = 783
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 543 ctcgttgatctgctcctccgaga 565
>gb|CB675630.1|CB675630 OSJNEe11H20.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11H20 3', mRNA sequence
Length = 747
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 539 ctcgttgatctgctcctccgaga 561
>gb|CB677097.1|CB677097 OSJNEe13L15.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13L15 5', mRNA sequence
Length = 812
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 716 ctcgttgatctgctcctccgaga 694
>gb|CB677098.1|CB677098 OSJNEe13L15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13L15 3', mRNA sequence
Length = 775
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 567 ctcgttgatctgctcctccgaga 589
>gb|BP432979.1|BP432979 BP432979 Oryza sativa (japonica cultivar-group) whole plant
seedling Oryza sativa (japonica cultivar-group) cDNA
clone JRC1260, mRNA sequence
Length = 821
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 669 ctcgttgatctgctcctccgaga 691
>dbj|AK058890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D10, full
insert sequence
Length = 985
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 454 ctcgttgatctgctcctccgaga 432
>dbj|AK064102.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A07, full
insert sequence
Length = 1722
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 526 cgtcgacgcgcgggaccaccggc 504
>dbj|AK071250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088G11, full
insert sequence
Length = 1224
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 649 gccgccacggcggcgcgcg 631
>dbj|AK105622.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C07, full
insert sequence
Length = 1188
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 732 gcgcgcgcgcagatgctgc 750
>dbj|AK110474.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-H06, full
insert sequence
Length = 2290
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 1218 ctgccgccacggcggcgcg 1236
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0045C13, from Chromosome 10, complete sequence
Length = 161250
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 110240 ctgccgccacggcggcgcg 110222
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
sequence
Length = 178158
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 145319 atagcaaggaaacaaacaa 145301
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03,
complete sequence
Length = 82352
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 72256 tagcaaggaaacaaacaac 72238
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0676H02
Length = 144252
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 88665 cgtcgacgcgcgggaccaccggc 88687
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1595_D08
Length = 116351
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 20675 cgtcgacgcgcgggaccaccggc 20697
>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0085K21
Length = 180714
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 160101 ctcgttgatctgctcctccgaga 160123
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0669G09
Length = 140067
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 19128 ctcgttgatctgctcctccgaga 19150
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 176388
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 67078 gaagagagagagaaaccgt 67060
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0592C05
Length = 150478
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 caagttgacagatcgatcg 29
|||||||||||||||||||
Sbjct: 57285 caagttgacagatcgatcg 57303
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete
sequence
Length = 137220
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 49068 gcgcgcgctggggagcagc 49086
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 191904 gaagagagagagaaaccgt 191922
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 1223648 gccgccacggcggcgcgcg 1223630
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0029C06
Length = 156500
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 106239 gccgccacggcggcgcgcg 106221
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0047B10
Length = 158798
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 80084 tggccggccggccggacgg 80066
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0696G06
Length = 142571
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 108068 gcgcgcgcgcagatgctgc 108086
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0090K04
Length = 152556
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 102078 gccggccggccggtcggacggac 102100
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0704D04
Length = 147638
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 133960 gccggccggccggtcggacggac 133982
>gb|AACV01001797.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001797, whole
genome shotgun sequence
Length = 12553
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 8685 gccggccggccggtcggacggac 8707
>gb|AACV01002846.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002846, whole
genome shotgun sequence
Length = 40728
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 33849 gcgcgcgcgcagatgctgc 33831
>gb|AACV01003426.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003426, whole
genome shotgun sequence
Length = 31605
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 4456 ctcgttgatctgctcctccgaga 4478
>gb|AACV01006147.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006147, whole
genome shotgun sequence
Length = 28743
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 190 tagcaaggaaacaaacaac 208
|||||||||||||||||||
Sbjct: 16843 tagcaaggaaacaaacaac 16825
>gb|AACV01006938.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006938, whole
genome shotgun sequence
Length = 29006
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 9663 gcgcgcgctggggagcagc 9681
>gb|AACV01008035.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008035, whole
genome shotgun sequence
Length = 28209
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 8483 atagcaaggaaacaaacaa 8501
>gb|AACV01014518.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014518, whole
genome shotgun sequence
Length = 23474
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 2578 gccgccacggcggcgcgcg 2596
>gb|AACV01019456.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019456, whole
genome shotgun sequence
Length = 59495
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 caagttgacagatcgatcg 29
|||||||||||||||||||
Sbjct: 33892 caagttgacagatcgatcg 33910
>gb|AACV01020131.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020131, whole
genome shotgun sequence
Length = 17095
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 8311 tggccggccggccggacgg 8329
>gb|AACV01020207.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020207, whole
genome shotgun sequence
Length = 24439
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 12220 cgtcgacgcgcgggaccaccggc 12242
>gb|AACV01021296.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021296, whole
genome shotgun sequence
Length = 2587
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 1531 ctgccgccacggcggcgcg 1513
>gb|AACV01021297.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021297, whole
genome shotgun sequence
Length = 62873
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 62722 ctgccgccacggcggcgcg 62740
>gb|AACV01025343.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025343, whole
genome shotgun sequence
Length = 14405
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 7700 gaagagagagagaaaccgt 7718
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 39023952 gcgcgcgcgcagatgctgc 39023970
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 24066273 gccggccggccggtcggacggac 24066295
>ref|NM_190263.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1692
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 1408 gcgcgcgcgcagatgctgc 1426
>ref|NM_195906.1| Oryza sativa (japonica cultivar-group) putative laccase
(OSJNBa0045C13.15), mRNA
Length = 1596
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 1029 ctgccgccacggcggcgcg 1047
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 511245 ctgccgccacggcggcgcg 511227
>ref|XM_450955.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1074
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 154 cgtcgacgcgcgggaccaccggc 132
>ref|XM_464255.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1341
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 1074 ctcgttgatctgctcctccgaga 1052
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 6984505 gccggccggccggtcggacggac 6984527
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 13471335 gcgcgcgcgcagatgctgc 13471353
>ref|NT_107079.1| Oryza sativa (japonica cultivar-group)
Length = 5472939
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 caagttgacagatcgatcg 29
|||||||||||||||||||
Sbjct: 4301292 caagttgacagatcgatcg 4301310
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 3471834 cgtcgacgcgcgggaccaccggc 3471856
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 2423193 tggccggccggccggacgg 2423175
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 1323580 atagcaaggaaacaaacaa 1323562
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 806400 gcgcgcgctggggagcagc 806418
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 644659 ctcgttgatctgctcctccgaga 644681
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 16915 gcgcgcgcgcagatgctgc 16933
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 1049428 gaagagagagagaaaccgt 1049446
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090
genomic scaffold, whole genome shotgun sequence
Length = 2475376
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 826779 ctgccgccacggcggcgcg 826761
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 653 ctgccgccacggcggcgcg 671
|||||||||||||||||||
Sbjct: 825521 ctgccgccacggcggcgcg 825503
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078
genomic scaffold, whole genome shotgun sequence
Length = 4067473
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 caagttgacagatcgatcg 29
|||||||||||||||||||
Sbjct: 733772 caagttgacagatcgatcg 733790
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 655 gccgccacggcggcgcgcg 673
|||||||||||||||||||
Sbjct: 5083051 gccgccacggcggcgcgcg 5083033
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaa 207
|||||||||||||||||||
Sbjct: 5788612 atagcaaggaaacaaacaa 5788594
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 667 gcgcgcgctggggagcagc 685
|||||||||||||||||||
Sbjct: 4075236 gcgcgcgctggggagcagc 4075254
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctccgaga 728
||||||||||| |||||||||||
Sbjct: 3773469 ctcgttgatctgctcctccgaga 3773491
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 13189933 gcgcgcgcgcagatgctgc 13189951
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 6925265 gccggccggccggtcggacggac 6925287
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 20233074 gaagagagagagaaaccgt 20233092
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 38391654 gcgcgcgcgcagatgctgc 38391672
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 23550388 gccggccggccggtcggacggac 23550410
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 431 gcgcgcgcgcagatgctgc 449
|||||||||||||||||||
Sbjct: 38943282 gcgcgcgcgcagatgctgc 38943300
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 468 gccggccggccggacggacggac 490
||||||||||||| |||||||||
Sbjct: 23987556 gccggccggccggtcggacggac 23987578
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 38.2 bits (19), Expect = 6.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 730 cgtcgacgcgcgggacctccggc 752
||||||||||||||||| |||||
Sbjct: 17780031 cgtcgacgcgcgggaccaccggc 17780053
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 466 tggccggccggccggacgg 484
|||||||||||||||||||
Sbjct: 16731390 tggccggccggccggacgg 16731372
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 caagttgacagatcgatcg 29
|||||||||||||||||||
Sbjct: 7105206 caagttgacagatcgatcg 7105224
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 24020318 gaagagagagagaaaccgt 24020336
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 38.2 bits (19), Expect = 6.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 217 gaagagagagagaaaccgt 235
|||||||||||||||||||
Sbjct: 23948524 gaagagagagagaaaccgt 23948542
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,839,443
Number of Sequences: 438736
Number of extensions: 1839443
Number of successful extensions: 14795
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12546
Number of HSP's gapped (non-prelim): 2227
length of query: 771
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 750
effective length of database: 2,791,206,460
effective search space: 2093404845000
effective search space used: 2093404845000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)