BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8616263.2.1
(509 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU095942.1|AU095942 AU095942 Rice green shoot Oryza sati... 254 4e-065
gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccas... 254 4e-065
dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA... 254 4e-065
dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA... 254 4e-065
ref|NM_190554.1| Oryza sativa (japonica cultivar-group), p... 254 4e-065
dbj|AK066513.1| Oryza sativa (japonica cultivar-group) cDNA... 190 5e-046
ref|NM_190556.1| Oryza sativa (japonica cultivar-group), p... 190 5e-046
gb|AACV01002654.1| Oryza sativa (japonica cultivar-group) c... 178 2e-042
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 178 2e-042
dbj|AP003240.2| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 178 2e-042
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 178 2e-042
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
dbj|AK060362.1| Oryza sativa (japonica cultivar-group) cDNA... 174 3e-041
dbj|AK068047.1| Oryza sativa (japonica cultivar-group) cDNA... 174 3e-041
gb|AU085860.1|AU085860 AU085860 Rice panicle at flowering s... 168 2e-039
gb|AC105770.2| Oryza sativa (japonica cultivar-group) chrom... 147 7e-033
gb|AACV01012344.1| Oryza sativa (japonica cultivar-group) c... 147 7e-033
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 147 7e-033
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 147 7e-033
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 147 7e-033
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 147 7e-033
ref|NM_190569.1| Oryza sativa (japonica cultivar-group), p... 143 1e-031
gb|AACV01002655.1| Oryza sativa (japonica cultivar-group) c... 135 3e-029
gb|CZ558842.1|CZ558842 M0051294 AS_TRIM_TDNA_B1 Oryza sativ... 129 2e-027
gb|AACV01002660.1| Oryza sativa (japonica cultivar-group) c... 129 2e-027
dbj|AK060579.1| Oryza sativa (japonica cultivar-group) cDNA... 105 2e-020
dbj|AK072397.1| Oryza sativa (japonica cultivar-group) cDNA... 105 2e-020
gb|AU172506.1|AU172506 AU172506 Rice panicle at flowering s... 80 1e-012
gb|AC134238.2| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
gb|AACV01006314.1| Oryza sativa (japonica cultivar-group) c... 72 3e-010
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 72 3e-010
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 72 3e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 72 3e-010
gb|AQ050846.1|AQ050846 nbxb0004cE09f CUGI Rice BAC Library ... 68 5e-009
dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
gb|AACV01002605.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
ref|NM_190416.1| Oryza sativa (japonica cultivar-group), p... 62 3e-007
dbj|AP003734.3| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC O... 60 1e-006
emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC O... 60 1e-006
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|AACV01011222.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
gb|CH401192.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|AACV01002688.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NM_190623.1| Oryza sativa (japonica cultivar-group), p... 56 2e-005
ref|XM_463490.1| Oryza sativa (japonica cultivar-group), p... 56 2e-005
dbj|AP003242.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP004072.2| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
ref|NM_196671.1| Oryza sativa (japonica cultivar-group) put... 52 3e-004
gb|CB664069.1|CB664069 OSJNEd09J11.r OSJNEd Oryza sativa (j... 50 0.001
gb|CB643630.1|CB643630 OSJNEb04G19.r OSJNEb Oryza sativa (j... 48 0.005
gb|CB655042.1|CB655042 OSJNEc08B07.f OSJNEc Oryza sativa (j... 48 0.005
gb|CB682582.1|CB682582 OSJNEf10B11.f OSJNEf Oryza sativa (j... 48 0.005
dbj|AK061816.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK065154.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC O... 48 0.005
dbj|AK109431.2| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
gb|AACV01011225.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|XM_463491.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
dbj|AP003688.1| Oryza sativa (japonica cultivar-group) chro... 46 0.018
gb|AACV01001911.1| Oryza sativa (japonica cultivar-group) c... 46 0.018
dbj|AP004317.1| Oryza sativa (japonica cultivar-group) geno... 46 0.018
ref|NM_192960.1| Oryza sativa (japonica cultivar-group), p... 46 0.018
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.018
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.018
ref|NM_193864.1| Oryza sativa (japonica cultivar-group), p... 44 0.072
ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.072
gb|CZ553235.1|CZ553235 M0007738 AS_TRIM_TDNA_B1 Oryza sativ... 42 0.28
gb|D39461.1|D39461 RICS0804A Rice shoot Oryza sativa (japon... 42 0.28
dbj|AK110474.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.28
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 42 0.28
gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01014990.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
ref|XM_476345.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.28
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.28
>gb|AU095942.1|AU095942 AU095942 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11732, mRNA sequence
Length = 712
Score = 254 bits (128), Expect = 4e-065
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 458 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 399
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
|| |||||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 398 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaaccatacacctgggttg 339
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 279
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 278 acggggtcgacgaggttgaacttggccgggtcgttcacgg 239
>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds
Length = 1874
Score = 254 bits (128), Expect = 4e-065
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 1637 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 1578
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
|| |||||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 1577 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaaccatacacctgggttg 1518
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 tcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 1458
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1457 acggggtcgacgaggttgaacttggccgggtcgttcacgg 1418
>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full
insert sequence
Length = 644
Score = 254 bits (128), Expect = 4e-065
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 407 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 348
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
|| |||||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 347 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaaccatacacctgggttg 288
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 228
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 227 acggggtcgacgaggttgaacttggccgggtcgttcacgg 188
>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full
insert sequence
Length = 2066
Score = 254 bits (128), Expect = 4e-065
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 1831 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 1772
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
|| |||||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 1771 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaaccatacacctgggttg 1712
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 tcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 1652
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1651 acggggtcgacgaggttgaacttggccgggtcgttcacgg 1612
>ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1734
Score = 254 bits (128), Expect = 4e-065
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 1715 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 1656
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
|| |||||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 1655 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaaccatacacctgggttg 1596
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 tcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 1536
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1535 acggggtcgacgaggttgaacttggccgggtcgttcacgg 1496
>dbj|AK066513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068J22, full
insert sequence
Length = 2212
Score = 190 bits (96), Expect = 5e-046
Identities = 192/224 (85%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 1796 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 1737
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
| |||||||| | |||| ||||||| ||||||||||||||||| ||||| || |||
Sbjct: 1736 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccctggattg 1677
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||
Sbjct: 1676 tccacgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcg 1617
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 1616 acggggtcgacgaggttgtacttggccgggtcgttcacggggtc 1573
>ref|NM_190556.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1734
Score = 190 bits (96), Expect = 5e-046
Identities = 192/224 (85%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 1715 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 1656
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
| |||||||| | |||| ||||||| ||||||||||||||||| ||||| || |||
Sbjct: 1655 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccctggattg 1596
Query: 406 tcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcg 465
|| |||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||
Sbjct: 1595 tccacgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcg 1536
Query: 466 acggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 1535 acggggtcgacgaggttgtacttggccgggtcgttcacggggtc 1492
>gb|AACV01002654.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002654, whole
genome shotgun sequence
Length = 23682
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8946 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 8887
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 8886 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 8841
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 9165 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 9106
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 9105 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 9059
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36240314 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 36240373
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 36240374 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 36240419
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 36251909 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 36251968
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 36251969 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 36252008
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 36312757 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 36312698
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 36312697 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 36312645
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 36240095 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 36240154
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 36240155 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 36240201
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 36251636 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 36251695
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 36251696 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 36251748
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 35478938 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 35478879
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 35478878 gcgacgaaccggatg 35478864
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
||||| ||||||| |||||||||| | |||| || |||| ||||||| ||||||||||
Sbjct: 36694251 gggttatcggcgacgaagcggatgactgcccacccaccggtcggcacggcgacggtgttc 36694192
Query: 460 cgctcgacggggtcgacgaggttgaact 487
||||| |||| ||||||||||||||
Sbjct: 36694191 cgctcctgcgggttgacgaggttgaact 36694164
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgc 462
|||| ||||||||||||||| ||||||||||||||
Sbjct: 36710357 cccagccgccggccggcacggcgacggtgttgcgc 36710323
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttg 483
|||| ||||||| ||||||| ||| |||||||||| || |||||||||||||||
Sbjct: 36701026 cccagccgccggtcggcacggcgagggtgttgcgcgaaaccgggtcgacgaggttg 36700971
Score = 46.1 bits (23), Expect = 0.018
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 436 ccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgg 490
||||| ||||||||||||||||| | ||| ||||||||||||||| ||||||
Sbjct: 25514189 ccggcgggcacgccgacggtgttcctctccggcgggtcgacgaggttgtacttgg 25514243
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10687697 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 10687756
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 10687757 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 10687802
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 10699292 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 10699351
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 10699352 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 10699391
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 10760140 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 10760081
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 10760080 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 10760028
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 10687478 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 10687537
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 10687538 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 10687584
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 10699019 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 10699078
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 10699079 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 10699131
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 9926321 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 9926262
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 9926261 gcgacgaaccggatg 9926247
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
||||| ||||||| |||||||||| | |||| || |||| ||||||| ||||||||||
Sbjct: 11141634 gggttatcggcgacgaagcggatgactgcccacccaccggtcggcacggcgacggtgttc 11141575
Query: 460 cgctcgacggggtcgacgaggttgaact 487
||||| |||| ||||||||||||||
Sbjct: 11141574 cgctcctgcgggttgacgaggttgaact 11141547
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgc 462
|||| ||||||||||||||| ||||||||||||||
Sbjct: 11157740 cccagccgccggccggcacggcgacggtgttgcgc 11157706
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttg 483
|||| ||||||| ||||||| ||| |||||||||| || |||||||||||||||
Sbjct: 11148409 cccagccgccggtcggcacggcgagggtgttgcgcgaaaccgggtcgacgaggttg 11148354
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0406G08
Length = 144233
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36657 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 36716
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 36717 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 36762
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 48252 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 48311
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 48312 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 48351
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 109100 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 109041
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 109040 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 108988
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 36438 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 36497
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 36498 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 36544
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 47979 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 48038
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 48039 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 48091
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10437055 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 10437114
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 10437115 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 10437160
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 10449684 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 10449743
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 10449744 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 10449783
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 10517569 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 10517510
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 10517509 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 10517457
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 10436836 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 10436895
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 10436896 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 10436942
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 10449411 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 10449470
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 10449471 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 10449523
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 9683051 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 9682992
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 9682991 gcgacgaaccggatg 9682977
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
||||| ||||||| |||||||||| | |||| || |||| ||||||| ||||||||||
Sbjct: 10867094 gggttatcggcgacgaagcggatgactgcccacccaccggtcggcacggcgacggtgttc 10867035
Query: 460 cgctcgacggggtcgacgaggttgaact 487
||||| |||| ||||||||||||||
Sbjct: 10867034 cgctcctgcgggttgacgaggttgaact 10867007
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgc 462
|||| ||||||||||||||| ||||||||||||||
Sbjct: 10883203 cccagccgccggccggcacggcgacggtgttgcgc 10883169
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttg 483
|||| ||||||| ||||||| ||| |||||||||| || |||||||||||||||
Sbjct: 10873869 cccagccgccggtcggcacggcgagggtgttgcgcgaaaccgggtcgacgaggttg 10873814
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35638776 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 35638835
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 35638836 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 35638881
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 35651405 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 35651464
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 35651465 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 35651504
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 35719290 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 35719231
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 35719230 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 35719178
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 35638557 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 35638616
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 35638617 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 35638663
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 35651132 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 35651191
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 35651192 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 35651244
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 34884772 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 34884713
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 34884712 gcgacgaaccggatg 34884698
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
||||| ||||||| |||||||||| | |||| || |||| ||||||| ||||||||||
Sbjct: 36068815 gggttatcggcgacgaagcggatgactgcccacccaccggtcggcacggcgacggtgttc 36068756
Query: 460 cgctcgacggggtcgacgaggttgaact 487
||||| |||| ||||||||||||||
Sbjct: 36068755 cgctcctgcgggttgacgaggttgaact 36068728
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgc 462
|||| ||||||||||||||| ||||||||||||||
Sbjct: 36084924 cccagccgccggccggcacggcgacggtgttgcgc 36084890
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttg 483
|||| ||||||| ||||||| ||| |||||||||| || |||||||||||||||
Sbjct: 36075590 cccagccgccggtcggcacggcgagggtgttgcgcgaaaccgggtcgacgaggttg 36075535
Score = 46.1 bits (23), Expect = 0.018
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 436 ccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgg 490
||||| ||||||||||||||||| | ||| ||||||||||||||| ||||||
Sbjct: 25121603 ccggcgggcacgccgacggtgttcctctccggcgggtcgacgaggttgtacttgg 25121657
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36159644 gggttgtcagcgaggaaacggatggccacccatccgccggccggcacgccgacggtgttg 36159703
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacgg 505
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 36159704 cgctcgacggggtcgacgaggttgaacttggccgggtcgttcacgg 36159749
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 36171239 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 36171298
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 36171299 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 36171338
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 36232087 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 36232028
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 36232027 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 36231975
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| || ||||||||||||| ||| |||| || || | ||| | ||||||||||
Sbjct: 36159425 gacggcggaggaagcagcttctggttcggatggctcccatccaacactagccatgccatc 36159484
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
|| |||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 36159485 ctcaggccccacgtcgtgtgcgcctccaaatgacagtgcatgaacca 36159531
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 36170966 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 36171025
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 36171026 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 36171078
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 35398268 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 35398209
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 35398208 gcgacgaaccggatg 35398194
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
||||| ||||||| |||||||||| | |||| || |||| ||||||| ||||||||||
Sbjct: 36613581 gggttatcggcgacgaagcggatgactgcccacccaccggtcggcacggcgacggtgttc 36613522
Query: 460 cgctcgacggggtcgacgaggttgaact 487
||||| |||| ||||||||||||||
Sbjct: 36613521 cgctcctgcgggttgacgaggttgaact 36613494
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgc 462
|||| ||||||||||||||| ||||||||||||||
Sbjct: 36629687 cccagccgccggccggcacggcgacggtgttgcgc 36629653
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 428 cccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttg 483
|||| ||||||| ||||||| ||| |||||||||| || |||||||||||||||
Sbjct: 36620356 cccagccgccggtcggcacggcgagggtgttgcgcgaaaccgggtcgacgaggttg 36620301
Score = 46.1 bits (23), Expect = 0.018
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 436 ccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttgg 490
||||| ||||||||||||||||| | ||| ||||||||||||||| ||||||
Sbjct: 25435472 ccggcgggcacgccgacggtgttcctctccggcgggtcgacgaggttgtacttgg 25435526
>dbj|AK060362.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H08, full
insert sequence
Length = 1304
Score = 174 bits (88), Expect = 3e-041
Identities = 133/148 (89%)
Strand = Plus / Minus
Query: 362 tgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcgga 421
||||| ||||||| || |||||||||||||| || || |||||||| ||| |||||||||
Sbjct: 839 tgtgcacctccaagtgacaatgcatgaaccacacacctgggttgtctgcgtggaagcgga 780
Query: 422 tggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggt 481
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 779 tggcgacccagccgccggcgggcacgccgacggtgttgcgctcgacggggtcgtagaggt 720
Query: 482 tgaacttggacgggtcgttgacggggtc 509
||||||||| ||||||||||| ||||||
Sbjct: 719 tgaacttggccgggtcgttgatggggtc 692
>dbj|AK068047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B16, full
insert sequence
Length = 2161
Score = 174 bits (88), Expect = 3e-041
Identities = 133/148 (89%)
Strand = Plus / Minus
Query: 362 tgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcgga 421
||||| ||||||| || |||||||||||||| || || |||||||| ||| |||||||||
Sbjct: 1696 tgtgcacctccaagtgacaatgcatgaaccacacacctgggttgtctgcgtggaagcgga 1637
Query: 422 tggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggt 481
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 1636 tggcgacccagccgccggcgggcacgccgacggtgttgcgctcgacggggtcgtagaggt 1577
Query: 482 tgaacttggacgggtcgttgacggggtc 509
||||||||| ||||||||||| ||||||
Sbjct: 1576 tgaacttggccgggtcgttgatggggtc 1549
>gb|AU085860.1|AU085860 AU085860 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1949, mRNA sequence
Length = 677
Score = 168 bits (85), Expect = 2e-039
Identities = 191/225 (84%), Gaps = 1/225 (0%)
Strand = Plus / Minus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 270 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 211
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttg 405
| |||||||| | |||| ||||||| ||||||||||||||||| ||||| || |||
Sbjct: 210 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccctggattg 151
Query: 406 tcggcgaggaagcggatggccacccatccgccggccgg-cacgccgacggtgttgcgctc 464
|| |||||||||| || || ||||| ||| | ||||| |||||||||||||||||||||
Sbjct: 150 tccacgaggaagcgaattgcaacccagccggccgccgggcacgccgacggtgttgcgctc 91
Query: 465 gacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 90 gacggggtcgacgaggttgtacttggccgggtcgttcacggggtc 46
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
complete sequence
Length = 131860
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 91944 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 91885
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 91884 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 91835
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 83279 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 83338
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 83339 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 83388
Score = 91.7 bits (46), Expect = 3e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| |||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 57896 ccggggttgtcggcgacgaagcggatggcgacccagccggcggtgggcacgctgatggtg 57955
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| |||| |||||||||||||||||| ||||||
Sbjct: 57956 ttccgctgcacggggtcgacgaggttgtacttgg 57989
>gb|AACV01012344.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012344, whole
genome shotgun sequence
Length = 34090
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 6791 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 6732
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 6731 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 6682
Score = 91.7 bits (46), Expect = 3e-016
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| |||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 32170 ccggggttgtcggcgacgaagcggatggcgacccagccggcggtgggcacgctgatggtg 32111
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| |||| |||||||||||||||||| ||||||
Sbjct: 32110 ttccgctgcacggggtcgacgaggttgtacttgg 32077
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 944165 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 944106
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 944105 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 944056
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 935500 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 935559
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 935560 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 935609
Score = 91.7 bits (46), Expect = 3e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| |||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 910117 ccggggttgtcggcgacgaagcggatggcgacccagccggcggtgggcacgctgatggtg 910176
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| |||| |||||||||||||||||| ||||||
Sbjct: 910177 ttccgctgcacggggtcgacgaggttgtacttgg 910210
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 4767283 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 4767342
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 4767343 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 4767392
Score = 91.7 bits (46), Expect = 3e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| |||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 4741904 ccggggttgtcggcgacgaagcggatggcgacccagccggcggtgggcacgctgatggtg 4741963
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| |||| |||||||||||||||||| ||||||
Sbjct: 4741964 ttccgctgcacggggtcgacgaggttgtacttgg 4741997
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 22067596 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 22067655
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 22067656 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 22067705
Score = 91.7 bits (46), Expect = 3e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| |||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 22042217 ccggggttgtcggcgacgaagcggatggcgacccagccggcggtgggcacgctgatggtg 22042276
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| |||| |||||||||||||||||| ||||||
Sbjct: 22042277 ttccgctgcacggggtcgacgaggttgtacttgg 22042310
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 7797162 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 7797103
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 7797102 cgctcctgcggatcgacgaggttgaacttggccgggtc 7797065
Score = 48.1 bits (24), Expect = 0.005
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
|||||||||| |||||||||| | |||| ||||||| |||||| ||| |||||| ||
Sbjct: 7841904 ttgtcggcgacgaagcggatgacagcccagccgccggtgggcacggcgatggtgttacgt 7841845
Query: 463 tcgacggggtcgacgaggttgaac 486
|| ||||||||||||||||||
Sbjct: 7841844 tcctgagggtcgacgaggttgaac 7841821
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 22390309 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 22390250
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 22390249 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 22390200
Score = 147 bits (74), Expect = 7e-033
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 22381644 gggttgtctgcgtggaagcggatggcgacccagccgccggcgggcacgccgacggtgttg 22381703
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 22381704 cgctcgacggggtcgtagaggttgaacttggccgggtcgttgatggggtc 22381753
Score = 91.7 bits (46), Expect = 3e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| |||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 22356261 ccggggttgtcggcgacgaagcggatggcgacccagccggcggtgggcacgctgatggtg 22356320
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| |||| |||||||||||||||||| ||||||
Sbjct: 22356321 ttccgctgcacggggtcgacgaggttgtacttgg 22356354
>ref|NM_190569.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1692
Score = 143 bits (72), Expect = 1e-031
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 382 tgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacccatccgccggcc 441
||||||| ||| |||||||| |||||||||||||| || | ||| |||||||||||||
Sbjct: 1577 tgcatgagccacaccccgggattgtcggcgaggaaccgaacggcgacccatccgccggtg 1518
Query: 442 ggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttg 501
||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 1517 ggcacgctgacggtgttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttc 1458
Query: 502 acggggtc 509
||||||||
Sbjct: 1457 acggggtc 1450
>gb|AACV01002655.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002655, whole
genome shotgun sequence
Length = 15660
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 410 cgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacgg 469
|||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 3634 cgaggaagcgaatggcaacccagccggccgccggcacgccgacggtgttgcgctcgacgg 3693
Query: 470 ggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
|||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 3694 ggtcgacgaggttgtacttggccgggtcgttcacggggtc 3733
Score = 65.9 bits (33), Expect = 2e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 286 gacggcggcgggagcagcttctggtgcgggaggctgccgtcgagcaccaaccatgccatc 345
|||||||| ||||| | |||||||| || ||||| ||||| |||||| ||||||||||
Sbjct: 3361 gacggcggagggaggatcttctggttgggtaggctcccgtcctgcaccacccatgccatc 3420
Query: 346 ctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaacccc 398
| |||||||| | |||| ||||||| ||||||||||||||||| |||||
Sbjct: 3421 ttcaggccccagctgacgtgcacctccaagtggcaatgcatgaaccatacccc 3473
>gb|CZ558842.1|CZ558842 M0051294 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0051294, DNA sequence
Length = 612
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 333 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 392
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 393 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 445
>gb|AACV01002660.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002660, whole
genome shotgun sequence
Length = 38788
Score = 129 bits (65), Expect = 2e-027
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
||||| |||||||||||||| || | ||| ||||||||||||| ||||||| |||||||
Sbjct: 29537 ccgggattgtcggcgaggaaccgaacggcgacccatccgccggtgggcacgctgacggtg 29478
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttggacgggtcgttgacggggtc 509
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct: 29477 ttgcgctcgacggggtcgacgaggttgtagttggccgggtcgttcacggggtc 29425
>dbj|AK060579.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F09, full
insert sequence
Length = 2006
Score = 105 bits (53), Expect = 2e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 1684 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 1625
Query: 391 caaaccccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccg 450
|| || || ||||| || |||| ||| | |||||| ||||| ||||||||||||||||||
Sbjct: 1624 cagacaccagggttatccgcgaagaacctgatggcgacccagccgccggccggcacgccg 1565
Query: 451 acggtgttgcgctcgacggggtcgacgaggttgaact 487
|||||||| | || || |||||||| ||||||||||
Sbjct: 1564 acggtgttcctctgcaccgggtcgaccaggttgaact 1528
>dbj|AK072397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078P12, full
insert sequence
Length = 2210
Score = 105 bits (53), Expect = 2e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 1764 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 1705
Query: 391 caaaccccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccg 450
|| || || ||||| || |||| ||| | |||||| ||||| ||||||||||||||||||
Sbjct: 1704 cagacaccagggttatccgcgaagaacctgatggcgacccagccgccggccggcacgccg 1645
Query: 451 acggtgttgcgctcgacggggtcgacgaggttgaact 487
|||||||| | || || |||||||| ||||||||||
Sbjct: 1644 acggtgttcctctgcaccgggtcgaccaggttgaact 1608
>gb|AU172506.1|AU172506 AU172506 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1625, mRNA sequence
Length = 459
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 120 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 61
Query: 391 caaaccccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccg 450
|| || || ||||| || |||| ||| | |||||| ||||| ||||||||||||||||||
Sbjct: 60 cagacaccagggttatccgcgaagaacctgatggcgacccagccgccggccggcacgccg 1
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0016G06, complete sequence
Length = 119910
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 83696 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 83755
Query: 480 gttgaact 487
||||||||
Sbjct: 83756 gttgaact 83763
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 83518 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 83577
Query: 391 ca 392
||
Sbjct: 83578 ca 83579
>gb|AACV01006314.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006314, whole
genome shotgun sequence
Length = 11189
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 7844 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 7785
Query: 480 gttgaact 487
||||||||
Sbjct: 7784 gttgaact 7777
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 8022 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 7963
Query: 391 ca 392
||
Sbjct: 7962 ca 7961
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 484165 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 484224
Query: 480 gttgaact 487
||||||||
Sbjct: 484225 gttgaact 484232
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 483987 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 484046
Query: 391 ca 392
||
Sbjct: 484047 ca 484048
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 469 gggtcgacgaggttgaacttg 489
|||||||||||||||||||||
Sbjct: 1761533 gggtcgacgaggttgaacttg 1761513
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 9128569 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 9128628
Query: 480 gttgaact 487
||||||||
Sbjct: 9128629 gttgaact 9128636
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 9128391 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 9128450
Query: 391 ca 392
||
Sbjct: 9128451 ca 9128452
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 469 gggtcgacgaggttgaacttg 489
|||||||||||||||||||||
Sbjct: 10499819 gggtcgacgaggttgaacttg 10499799
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 9320931 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 9320990
Query: 480 gttgaact 487
||||||||
Sbjct: 9320991 gttgaact 9320998
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 9320753 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 9320812
Query: 391 ca 392
||
Sbjct: 9320813 ca 9320814
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 469 gggtcgacgaggttgaacttg 489
|||||||||||||||||||||
Sbjct: 10692181 gggtcgacgaggttgaacttg 10692161
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 9138349 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 9138408
Query: 480 gttgaact 487
||||||||
Sbjct: 9138409 gttgaact 9138416
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 9138171 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 9138230
Query: 391 ca 392
||
Sbjct: 9138231 ca 9138232
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 469 gggtcgacgaggttgaacttg 489
|||||||||||||||||||||
Sbjct: 10415717 gggtcgacgaggttgaacttg 10415697
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 420 gatggccacccatccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgag 479
|||||| ||||| |||||||||||||||||||||||||| | || || |||||||| ||
Sbjct: 9140516 gatggcgacccagccgccggccggcacgccgacggtgttcctctgcaccgggtcgaccag 9140575
Query: 480 gttgaact 487
||||||||
Sbjct: 9140576 gttgaact 9140583
Score = 44.1 bits (22), Expect = 0.072
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| |||||||||| | | ||||| |||||||| |||||| |||||||||||||||
Sbjct: 9140338 accacccatgccatcttcaacccccaggttgtgtgaacctccaggtggcaatgcatgaac 9140397
Query: 391 ca 392
||
Sbjct: 9140398 ca 9140399
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 469 gggtcgacgaggttgaacttg 489
|||||||||||||||||||||
Sbjct: 10417616 gggtcgacgaggttgaacttg 10417596
>gb|AQ050846.1|AQ050846 nbxb0004cE09f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0004J17f, DNA sequence
Length = 818
Score = 67.9 bits (34), Expect = 5e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 397 ccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtg 456
|||||||||||||||| ||||||||||| ||||| ||| ||| ||||||| || ||||
Sbjct: 502 ccggggttgtcggcgactaagcggatggcgacccagccggcggtgggcacgctgatggtg 561
Query: 457 ttgcgctcgacggggtcgacgaggttgaacttgg 490
|| || | |||| ||||||||||||| ||||||
Sbjct: 562 ttccgatgcacggtgtcgacgaggttgtacttgg 595
>dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072C02, full
insert sequence
Length = 2023
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 1734 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 1675
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 1674 gcgacgaaccggatg 1660
>dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D07, full
insert sequence
Length = 1678
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 1389 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 1330
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 1329 gcgacgaaccggatg 1315
>gb|AACV01002605.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002605, whole
genome shotgun sequence
Length = 51705
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 6702 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 6761
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 6762 gcgacgaaccggatg 6776
>ref|NM_190416.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1704
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 1622 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 1563
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 1562 gcgacgaaccggatg 1548
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088C09
Length = 154084
Score = 61.9 bits (31), Expect = 3e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| ||| ||||| | || | |||||||||||||| ||| ||||| |||||||||
Sbjct: 22217 aggccccaggttatgtgcacgtcaagatggcaatgcatgagccacaccccagggttgtcg 22158
Query: 409 gcgaggaagcggatg 423
|||| ||| ||||||
Sbjct: 22157 gcgacgaaccggatg 22143
>emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb0026N09 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 135462
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 30889 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 30830
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 30829 cgctcctgcggatcgacgaggttgaacttggccgggtc 30792
>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 151176
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 150749 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 150690
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 150689 cgctcctgcggatcgacgaggttgaacttggccgggtc 150652
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
Length = 3813697
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 1115062 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 1115003
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 1115002 cgctcctgcggatcgacgaggttgaacttggccgggtc 1114965
Score = 48.1 bits (24), Expect = 0.005
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
|||||||||| |||||||||| | |||| ||||||| |||||| ||| |||||| ||
Sbjct: 1228212 ttgtcggcgacgaagcggatgacagcccagccgccggtgggcacggcgatggtgttacgt 1228153
Query: 463 tcgacggggtcgacgaggttgaac 486
|| ||||||||||||||||||
Sbjct: 1228152 tcctgagggtcgacgaggttgaac 1228129
>gb|AACV01011222.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011222, whole
genome shotgun sequence
Length = 14251
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 11151 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 11092
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 11091 cgctcctgcggatcgacgaggttgaacttggccgggtc 11054
>gb|CH401192.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000029
genomic scaffold, whole genome shotgun sequence
Length = 624827
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 118523 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 118464
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 118463 cgctcctgcggatcgacgaggttgaacttggccgggtc 118426
Score = 48.1 bits (24), Expect = 0.005
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
|||||||||| |||||||||| | |||| ||||||| |||||| ||| |||||| ||
Sbjct: 163265 ttgtcggcgacgaagcggatgacagcccagccgccggtgggcacggcgatggtgttacgt 163206
Query: 463 tcgacggggtcgacgaggttgaac 486
|| ||||||||||||||||||
Sbjct: 163205 tcctgagggtcgacgaggttgaac 163182
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 8962120 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 8962061
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 8962060 cgctcctgcggatcgacgaggttgaacttggccgggtc 8962023
Score = 48.1 bits (24), Expect = 0.005
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
|||||||||| |||||||||| | |||| ||||||| |||||| ||| |||||| ||
Sbjct: 9075268 ttgtcggcgacgaagcggatgacagcccagccgccggtgggcacggcgatggtgttacgt 9075209
Query: 463 tcgacggggtcgacgaggttgaac 486
|| ||||||||||||||||||
Sbjct: 9075208 tcctgagggtcgacgaggttgaac 9075185
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 400 gggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttg 459
|||||||| || | |||||||||| | |||| ||||||| || ||| |||||||||||
Sbjct: 8962003 gggttgtctgcaacgaagcggatgacggcccagccgccggtggggacggcgacggtgttg 8961944
Query: 460 cgctcgacggggtcgacgaggttgaacttggacgggtc 497
||||| || ||||||||||||||||||| ||||||
Sbjct: 8961943 cgctcctgcggatcgacgaggttgaacttggccgggtc 8961906
Score = 48.1 bits (24), Expect = 0.005
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 403 ttgtcggcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgc 462
|||||||||| |||||||||| | |||| ||||||| |||||| ||| |||||| ||
Sbjct: 9075153 ttgtcggcgacgaagcggatgacagcccagccgccggtgggcacggcgatggtgttacgt 9075094
Query: 463 tcgacggggtcgacgaggttgaac 486
|| ||||||||||||||||||
Sbjct: 9075093 tcctgagggtcgacgaggttgaac 9075070
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 882,994
Number of Sequences: 438736
Number of extensions: 882994
Number of successful extensions: 20212
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 18820
Number of HSP's gapped (non-prelim): 1381
length of query: 509
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 488
effective length of database: 2,791,206,460
effective search space: 1362108752480
effective search space used: 1362108752480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)