BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8612115.2.1
(1078 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB661163.1|CB661163 OSJNEd03K16.r OSJNEd Oryza sativa (j... 298 4e-078
dbj|D55711.1| Oryza sativa (japonica cultivar-group) mRNA f... 298 4e-078
dbj|AK058878.1| Oryza sativa (japonica cultivar-group) cDNA... 298 4e-078
dbj|AK099172.1| Oryza sativa (japonica cultivar-group) cDNA... 298 4e-078
dbj|AK104120.1| Oryza sativa (japonica cultivar-group) cDNA... 298 4e-078
dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA... 298 4e-078
gb|AACV01002727.1| Oryza sativa (japonica cultivar-group) c... 298 4e-078
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 298 4e-078
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 298 4e-078
dbj|AP003287.3| Oryza sativa (japonica cultivar-group) geno... 298 4e-078
dbj|AP003794.4| Oryza sativa (japonica cultivar-group) geno... 298 4e-078
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 298 4e-078
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 298 4e-078
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 298 4e-078
dbj|AK103976.1| Oryza sativa (japonica cultivar-group) cDNA... 290 9e-076
ref|NM_190699.1| Oryza sativa (japonica cultivar-group), p... 286 1e-074
dbj|AB003195.1| Oryza sativa (japonica cultivar-group) mRNA... 274 6e-071
gb|CB661162.1|CB661162 OSJNEd03K16.f OSJNEd Oryza sativa (j... 209 3e-051
gb|AU064547.2|AU064547 AU064547 Rice panicle shorter than 3... 195 5e-047
gb|C96640.1|C96640 C96640 Rice callus Oryza sativa (japonic... 175 5e-041
gb|D41935.1|D41935 RICS4960A Rice shoot Oryza sativa (japon... 155 5e-035
dbj|AK111427.1| Oryza sativa (japonica cultivar-group) cDNA... 155 5e-035
gb|AACV01002143.1| Oryza sativa (japonica cultivar-group) c... 155 5e-035
ref|NM_192142.1| Oryza sativa (japonica cultivar-group), p... 155 5e-035
dbj|AP003450.3| Oryza sativa (japonica cultivar-group) geno... 155 5e-035
dbj|AP002881.2| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
dbj|AK062603.1| Oryza sativa (japonica cultivar-group) cDNA... 129 3e-027
dbj|AP003206.4| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
gb|AACV01000830.1| Oryza sativa (japonica cultivar-group) c... 129 3e-027
ref|XM_462852.1| Oryza sativa (japonica cultivar-group), p... 129 3e-027
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 129 3e-027
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
gb|D22210.1|D22210 RICC10501A Rice callus Oryza sativa (jap... 113 2e-022
gb|CV723702.1|CV723702 root--04-H23.g1 Rice root lambda pha... 113 2e-022
dbj|AB006188.3| Oryza sativa (japonica cultivar-group) mRNA... 113 2e-022
dbj|AB026998.1| Oryza sativa (japonica cultivar-group) mRNA... 113 2e-022
dbj|D55713.1| Oryza sativa (japonica cultivar-group) mRNA f... 113 2e-022
dbj|AK100973.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-022
gb|AACV01002038.1| Oryza sativa (japonica cultivar-group) c... 113 2e-022
ref|NM_192471.1| Oryza sativa (japonica cultivar-group), p... 113 2e-022
dbj|AP003291.3| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
dbj|AP004364.4| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
gb|AU097438.1|AU097438 AU097438 Rice shoot Oryza sativa (ja... 109 3e-021
gb|AU166148.1|AU166148 AU166148 Rice panicle shorter than 3... 103 2e-019
dbj|AK111415.1| Oryza sativa (japonica cultivar-group) cDNA... 101 6e-019
ref|NM_190698.1| Oryza sativa (japonica cultivar-group), p... 101 6e-019
gb|AU102124.1|AU102124 AU102124 Rice callus Oryza sativa (j... 76 4e-011
dbj|AP004349.3| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AACV01015901.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|XM_477712.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 74 2e-010
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AQ328301.1|AQ328301 nbxb0042F12f CUGI Rice BAC Library O... 72 6e-010
dbj|AP004346.2| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
dbj|AP005674.5| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
gb|AACV01015816.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_477539.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 68 1e-008
gb|CH401222.1| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
dbj|AK102369.1| Oryza sativa (japonica cultivar-group) cDNA... 66 4e-008
gb|AACV01009410.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|XM_472006.1| Oryza sativa (japonica cultivar-group), p... 66 4e-008
ref|NT_079857.2| Oryza sativa (japonica cultivar-group) 66 4e-008
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromoso... 66 4e-008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|CV723079.1|CV723079 root--02-G23.g1 Rice root lambda pha... 58 9e-006
dbj|AK106178.1| Oryza sativa (japonica cultivar-group) cDNA... 58 9e-006
gb|AACV01002130.1| Oryza sativa (japonica cultivar-group) c... 58 9e-006
ref|NM_192104.1| Oryza sativa (japonica cultivar-group), p... 58 9e-006
dbj|AP003455.2| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
dbj|AB110201.1| Oryza sativa (japonica cultivar-group) mRNA... 58 9e-006
dbj|AP004339.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AK102505.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AACV01016848.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
gb|AACV01023805.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AC134045.2| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AQ327182.1|AQ327182 nbxb0040F05f CUGI Rice BAC Library O... 48 0.009
gb|D46335.1|D46335 RICS10944A Rice green shoot Oryza sativa... 48 0.009
gb|C73106.1|C73106 C73106 Rice panicle at flowering stage O... 48 0.009
gb|D22311.1|D22311 RICC10728A Rice callus Oryza sativa (jap... 48 0.009
gb|BF889433.1|BF889433 EST002 Magnaporthe grisea infected 1... 48 0.009
gb|CB641535.1|CB641535 OSJNEb01D17.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB641781.1|CB641781 OSJNEb01J18.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB641887.1|CB641887 OSJNEb01M10.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB643876.1|CB643876 OSJNEb04N01.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB643877.1|CB643877 OSJNEb04N01.r OSJNEb Oryza sativa (j... 48 0.009
gb|CB645412.1|CB645412 OSJNEb07A24.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB645548.1|CB645548 OSJNEb07E22.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB650151.1|CB650151 OSJNEb14H05.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB650244.1|CB650244 OSJNEb14J14.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB650420.1|CB650420 OSJNEb14N17.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB650641.1|CB650641 OSJNEb15D08.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB651171.1|CB651171 OSJNEb16A14.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB651334.1|CB651334 OSJNEb16E02.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB651500.1|CB651500 OSJNEb16H18.f OSJNEb Oryza sativa (j... 48 0.009
gb|CB652069.1|CB652069 OSJNEc01I08.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB652677.1|CB652677 OSJNEc02O24.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB653590.1|CB653590 OSJNEc04M10.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB653957.1|CB653957 OSJNEc05H10.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB654311.1|CB654311 OSJNEc06H04.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB655193.1|CB655193 OSJNEc08F19.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB655535.1|CB655535 OSJNEc09B05.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB656587.1|CB656587 OSJNEc11B23.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB657509.1|CB657509 OSJNEc12O13.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB657554.1|CB657554 OSJNEc13A01.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB658726.1|CB658726 OSJNEc14P15.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB659739.1|CB659739 OSJNEc16P14.f OSJNEc Oryza sativa (j... 48 0.009
gb|CB661079.1|CB661079 OSJNEd03H23.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB661287.1|CB661287 OSJNEd03O21.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB662160.1|CB662160 OSJNEd05O20.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB665410.1|CB665410 OSJNEd11N01.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB666262.1|CB666262 OSJNEd13B14.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB666958.1|CB666958 OSJNEd14B07.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB667510.1|CB667510 OSJNEd14N24.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB668244.1|CB668244 OSJNEd16A06.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB668273.1|CB668273 OSJNEd16A22.f OSJNEd Oryza sativa (j... 48 0.009
gb|CB676160.1|CB676160 OSJNEe12E08.f OSJNEe Oryza sativa (j... 48 0.009
gb|CB677795.1|CB677795 OSJNEe15C10.f OSJNEe Oryza sativa (j... 48 0.009
gb|CB679702.1|CB679702 OSJNEf03I17.f OSJNEf Oryza sativa (j... 48 0.009
gb|CB681111.1|CB681111 OSJNEf06P12.f OSJNEf Oryza sativa (j... 48 0.009
gb|CB683153.1|CB683153 OSJNEf11C21.f OSJNEf Oryza sativa (j... 48 0.009
gb|CB685547.1|CB685547 OSJNEf16A18.f OSJNEf Oryza sativa (j... 48 0.009
gb|CB685680.1|CB685680 OSJNEf16F01.f OSJNEf Oryza sativa (j... 48 0.009
gb|CB685750.1|CB685750 OSJNEf16H05.f OSJNEf Oryza sativa (j... 48 0.009
gb|CB685821.1|CB685821 OSJNEf16J05.f OSJNEf Oryza sativa (j... 48 0.009
gb|BP433021.1|BP433021 BP433021 Oryza sativa (japonica cult... 48 0.009
gb|CF305855.1|CF305855 HDA1--01-O23.g1 OsHDAC1-overexpressi... 48 0.009
gb|CV152520.1|CV152520 LT10-S.SEQ Cold stressed rice cDNA l... 48 0.009
dbj|AK062114.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK065866.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
gb|AC104270.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|AACV01011392.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
gb|AC119290.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|C29113.1|C29113 C29113 Rice callus cDNA Oryza sativa (ja... 44 0.14
gb|AU062525.1|AU062525 AU062525 Rice callus Oryza sativa (j... 44 0.14
gb|AU108098.1|AU108098 AU108098 Rice callus Oryza sativa (j... 44 0.14
gb|AU161108.1|AU161108 AU161108 Rice callus Oryza sativa (j... 44 0.14
gb|CB678948.1|CB678948 OSJNEf01N09.f OSJNEf Oryza sativa (j... 44 0.14
gb|CB684554.1|CB684554 OSJNEf14D04.f OSJNEf Oryza sativa (j... 44 0.14
gb|CV723381.1|CV723381 root--03-G09.g1 Rice root lambda pha... 44 0.14
gb|CV723562.1|CV723562 root--03-P11.g1 Rice root lambda pha... 44 0.14
dbj|AK058882.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK065316.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP004048.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP004878.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|AACV01005658.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01023804.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01026135.1| Oryza sativa (japonica cultivar-group) C... 44 0.14
ref|XM_483110.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 44 0.14
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.14
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
>gb|CB661163.1|CB661163 OSJNEd03K16.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03K16 3', mRNA sequence
Length = 730
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 520 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 461
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 460 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 401
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 400 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 341
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 340 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 281
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 280 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 221
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 220 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 161
Query: 887 agccag 892
||||||
Sbjct: 160 agccag 155
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 655 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 596
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 595 tgggacgacttggccaggtacctcaag 569
>dbj|D55711.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
cds
Length = 1096
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 564 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 623
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 624 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 683
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 684 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 743
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 744 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 803
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 804 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 863
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 864 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 923
Query: 887 agccag 892
||||||
Sbjct: 924 agccag 929
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 95 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 154
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 155 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 214
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 215 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 274
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 275 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 334
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 335 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 394
Query: 337 caactacct 345
|||||||||
Sbjct: 395 caactacct 403
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 488
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 489 tgggacgacttggccaggtacctcaag 515
>dbj|AK058878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A04, full
insert sequence
Length = 1193
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 590 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 649
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 650 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 709
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 710 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 769
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 770 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 829
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 830 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 889
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 890 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 949
Query: 887 agccag 892
||||||
Sbjct: 950 agccag 955
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 121 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 180
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 181 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 240
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 241 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 300
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 301 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 360
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 361 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 420
Query: 337 caactacct 345
|||||||||
Sbjct: 421 caactacct 429
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 514
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 515 tgggacgacttggccaggtacctcaag 541
>dbj|AK099172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091F16, full
insert sequence
Length = 1134
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 591 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 650
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 651 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 710
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 711 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 770
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 771 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 830
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 831 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 890
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 891 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 950
Query: 887 agccag 892
||||||
Sbjct: 951 agccag 956
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 122 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 181
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 182 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 241
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 242 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 301
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 302 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 361
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 362 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 421
Query: 337 caactacct 345
|||||||||
Sbjct: 422 caactacct 430
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 456 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 515
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 516 tgggacgacttggccaggtacctcaag 542
>dbj|AK104120.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C02, full
insert sequence
Length = 1109
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 590 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 649
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 650 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 709
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 710 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 769
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 770 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 829
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 830 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 889
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 890 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 949
Query: 887 agccag 892
||||||
Sbjct: 950 agccag 955
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 121 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 180
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 181 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 240
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 241 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 300
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 301 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 360
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 361 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 420
Query: 337 caactacct 345
|||||||||
Sbjct: 421 caactacct 429
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 514
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 515 tgggacgacttggccaggtacctcaag 541
>dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G06, full
insert sequence
Length = 3419
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 2164 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 2105
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 2104 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 2045
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 2044 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 1985
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 1984 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 1925
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 1924 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 1865
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 1864 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 1805
Query: 887 agccag 892
||||||
Sbjct: 1804 agccag 1799
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 2633 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 2574
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 2573 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 2514
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 2513 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 2454
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 2453 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 2394
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 2393 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 2334
Query: 337 caactacct 345
|||||||||
Sbjct: 2333 caactacct 2325
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2299 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 2240
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 2239 tgggacgacttggccaggtacctcaag 2213
>gb|AACV01002727.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002727, whole
genome shotgun sequence
Length = 21631
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 8172 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 8113
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 8112 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 8053
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 8052 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 7993
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 7992 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 7933
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 7932 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 7873
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 7872 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 7813
Query: 887 agccag 892
||||||
Sbjct: 7812 agccag 7807
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 8641 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 8582
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 8581 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 8522
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 8521 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 8462
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 8461 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 8402
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 8401 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 8342
Query: 337 caactacct 345
|||||||||
Sbjct: 8341 caactacct 8333
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8307 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 8248
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 8247 tgggacgacttggccaggtacctcaag 8221
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 11869 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 11810
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 11809 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 11759
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 12078 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 12019
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 12018 tgggacgacct 12008
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 12222 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 12163
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 12162 ggcctctcatccc 12150
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 12353 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 12294
Query: 156 cg 157
||
Sbjct: 12293 cg 12292
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 11606 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 11560
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 37314101 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 37314160
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 37314161 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 37314220
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 37314221 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 37314280
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 37314281 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 37314340
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 37314341 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 37314400
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 37314401 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 37314460
Query: 887 agccag 892
||||||
Sbjct: 37314461 agccag 37314466
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 37313632 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 37313691
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 37313692 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 37313751
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 37313752 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 37313811
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 37313812 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 37313871
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 37313872 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 37313931
Query: 337 caactacct 345
|||||||||
Sbjct: 37313932 caactacct 37313940
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 28609651 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 28609710
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 28609711 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 28609760
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 11205110 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 11205169
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11205170 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 11205214
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 37313966 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 37314025
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 37314026 tgggacgacttggccaggtacctcaag 37314052
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 26960039 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 26960098
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 26960099 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 26960143
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 37310404 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 37310463
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 37310464 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 37310514
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 37310195 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 37310254
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 37310255 tgggacgacct 37310265
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 11204969 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 11205018
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 37310051 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 37310110
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 37310111 ggcctctcatccc 37310123
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 26959907 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 26959954
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 26959776 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 26959834
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 11204824 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 11204872
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 37309920 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 37309979
Query: 156 cg 157
||
Sbjct: 37309980 cg 37309981
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 28609507 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 28609549
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 11204627 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 11204686
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 11204687 aactacgccttcgtcaacctcgccttcctc 11204716
Score = 58.1 bits (29), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacatcgaga 432
|||| ||||||||||| || ||||||||| ||||||||||||| ||||
Sbjct: 28429555 gccccctcggcgacgcggtgctcgacggcatcgacttcgacatagaga 28429508
Score = 58.1 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 591 acgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||| |||||||||||||||||||||| || ||||||||||
Sbjct: 28429369 acgtttgggtgcagttctacaacaaccggcagtgccagtac 28429329
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 28609172 catcgccgtctactggggccagaacggcagcgaggg 28609207
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 37310667 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 37310713
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 26959573 catcgccgtgtactggggccagaacggcgacgaggg 26959608
Score = 44.2 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgc 552
|||||||||||||||| |||||||||
Sbjct: 28429433 gcgccgcagtgcccgtacccggacgc 28429408
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 11761484 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 11761543
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 11761544 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 11761603
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 11761604 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 11761663
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 11761664 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 11761723
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 11761724 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 11761783
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 11761784 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 11761843
Query: 887 agccag 892
||||||
Sbjct: 11761844 agccag 11761849
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 11761015 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 11761074
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 11761075 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 11761134
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 11761135 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 11761194
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 11761195 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 11761254
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 11761255 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 11761314
Query: 337 caactacct 345
|||||||||
Sbjct: 11761315 caactacct 11761323
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 3057034 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 3057093
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3057094 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 3057143
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11761349 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 11761408
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 11761409 tgggacgacttggccaggtacctcaag 11761435
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 1407422 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 1407481
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 1407482 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 1407526
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 11757787 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 11757846
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 11757847 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 11757897
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 11757578 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 11757637
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 11757638 tgggacgacct 11757648
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 11757434 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 11757493
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 11757494 ggcctctcatccc 11757506
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 1407290 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 1407337
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 1407159 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 1407217
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 11757303 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 11757362
Query: 156 cg 157
||
Sbjct: 11757363 cg 11757364
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 3056890 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 3056932
Score = 58.1 bits (29), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacatcgaga 432
|||| ||||||||||| || ||||||||| ||||||||||||| ||||
Sbjct: 2876938 gccccctcggcgacgcggtgctcgacggcatcgacttcgacatagaga 2876891
Score = 58.1 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 591 acgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||| |||||||||||||||||||||| || ||||||||||
Sbjct: 2876752 acgtttgggtgcagttctacaacaaccggcagtgccagtac 2876712
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 3056555 catcgccgtctactggggccagaacggcagcgaggg 3056590
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 11758050 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 11758096
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 1406956 catcgccgtgtactggggccagaacggcgacgaggg 1406991
Score = 44.2 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgc 552
|||||||||||||||| |||||||||
Sbjct: 2876816 gcgccgcagtgcccgtacccggacgc 2876791
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0679C12
Length = 153666
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 70420 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 70479
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 70480 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 70539
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 70540 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 70599
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 70600 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 70659
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 70660 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 70719
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 70720 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 70779
Query: 887 agccag 892
||||||
Sbjct: 70780 agccag 70785
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 69951 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 70010
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 70011 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 70070
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 70071 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 70130
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 70131 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 70190
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 70191 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 70250
Query: 337 caactacct 345
|||||||||
Sbjct: 70251 caactacct 70259
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 70285 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 70344
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 70345 tgggacgacttggccaggtacctcaag 70371
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 66723 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 66782
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 66783 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 66833
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 66514 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 66573
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 66574 tgggacgacct 66584
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 66370 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 66429
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 66430 ggcctctcatccc 66442
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 66239 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 66298
Query: 156 cg 157
||
Sbjct: 66299 cg 66300
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 66986 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 67032
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489B03
Length = 150381
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 108087 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 108146
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 108147 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 108206
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 108207 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 108266
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 108267 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 108326
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 108327 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 108386
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 108387 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 108446
Query: 887 agccag 892
||||||
Sbjct: 108447 agccag 108452
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 107618 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 107677
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 107678 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 107737
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 107738 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 107797
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 107798 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 107857
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 107858 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 107917
Query: 337 caactacct 345
|||||||||
Sbjct: 107918 caactacct 107926
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 107952 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 108011
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 108012 tgggacgacttggccaggtacctcaag 108038
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 104390 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 104449
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 104450 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 104500
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 104181 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 104240
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 104241 tgggacgacct 104251
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 104037 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 104096
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 104097 ggcctctcatccc 104109
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 103906 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 103965
Query: 156 cg 157
||
Sbjct: 103966 cg 103967
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 104653 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 104699
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 11437111 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 11437170
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 11437171 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 11437230
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 11437231 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 11437290
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 11437291 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 11437350
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 11437351 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 11437410
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 11437411 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 11437470
Query: 887 agccag 892
||||||
Sbjct: 11437471 agccag 11437476
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 11436642 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 11436701
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 11436702 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 11436761
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 11436762 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 11436821
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 11436822 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 11436881
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 11436882 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 11436941
Query: 337 caactacct 345
|||||||||
Sbjct: 11436942 caactacct 11436950
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 2995518 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 2995577
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995578 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 2995627
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11436976 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 11437035
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 11437036 tgggacgacttggccaggtacctcaag 11437062
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 1354744 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 1354803
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 1354804 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 1354848
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 11433414 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 11433473
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 11433474 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 11433524
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 11433205 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 11433264
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 11433265 tgggacgacct 11433275
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 11433061 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 11433120
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 11433121 ggcctctcatccc 11433133
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 1354612 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 1354659
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 1354481 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 1354539
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 11432930 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 11432989
Query: 156 cg 157
||
Sbjct: 11432990 cg 11432991
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2995374 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 2995416
Score = 58.1 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 591 acgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||| |||||||||||||||||||||| || ||||||||||
Sbjct: 2808828 acgtttgggtgcagttctacaacaaccggcagtgccagtac 2808788
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 2995039 catcgccgtctactggggccagaacggcagcgaggg 2995074
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 11433677 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 11433723
Score = 52.2 bits (26), Expect = 6e-004
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 385 gcccnctcggcgacgccg-tcctcgacggcgtcgacttcgacatcgaga 432
|||| ||||||||||||| | ||||||||| ||||||||||||| ||||
Sbjct: 2809015 gccccctcggcgacgccggtgctcgacggcatcgacttcgacatagaga 2808967
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 1354278 catcgccgtgtactggggccagaacggcgacgaggg 1354313
Score = 44.2 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgc 552
|||||||||||||||| |||||||||
Sbjct: 2808892 gcgccgcagtgcccgtacccggacgc 2808867
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 36638832 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 36638891
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 36638892 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 36638951
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 36638952 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 36639011
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 36639012 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 36639071
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 36639072 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 36639131
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 36639132 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 36639191
Query: 887 agccag 892
||||||
Sbjct: 36639192 agccag 36639197
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 36638363 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 36638422
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 36638423 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 36638482
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 36638483 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 36638542
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 36638543 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 36638602
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 36638603 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 36638662
Query: 337 caactacct 345
|||||||||
Sbjct: 36638663 caactacct 36638671
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 28197239 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 28197298
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 28197299 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 28197348
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 11377268 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 11377327
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11377328 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 11377372
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 36638697 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 36638756
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 36638757 tgggacgacttggccaggtacctcaag 36638783
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 26556465 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 26556524
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 26556525 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 26556569
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 36635135 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 36635194
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 36635195 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 36635245
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 36634926 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 36634985
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 36634986 tgggacgacct 36634996
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 11377127 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 11377176
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 36634782 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 36634841
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 36634842 ggcctctcatccc 36634854
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 26556333 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 26556380
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 26556202 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 26556260
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 11376982 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 11377030
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 36634651 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 36634710
Query: 156 cg 157
||
Sbjct: 36634711 cg 36634712
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 28197095 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 28197137
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 11376785 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 11376844
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 11376845 aactacgccttcgtcaacctcgccttcctc 11376874
Score = 58.1 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 591 acgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||| |||||||||||||||||||||| || ||||||||||
Sbjct: 28010549 acgtttgggtgcagttctacaacaaccggcagtgccagtac 28010509
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 28196760 catcgccgtctactggggccagaacggcagcgaggg 28196795
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 36635398 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 36635444
Score = 52.2 bits (26), Expect = 6e-004
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 385 gcccnctcggcgacgccg-tcctcgacggcgtcgacttcgacatcgaga 432
|||| ||||||||||||| | ||||||||| ||||||||||||| ||||
Sbjct: 28010736 gccccctcggcgacgccggtgctcgacggcatcgacttcgacatagaga 28010688
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 26555999 catcgccgtgtactggggccagaacggcgacgaggg 26556034
Score = 44.2 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgc 552
|||||||||||||||| |||||||||
Sbjct: 28010613 gcgccgcagtgcccgtacccggacgc 28010588
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 298 bits (150), Expect = 4e-078
Identities = 312/366 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 37233431 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 37233490
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 37233491 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 37233550
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 37233551 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 37233610
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 37233611 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 37233670
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 37233671 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 37233730
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 37233731 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 37233790
Query: 887 agccag 892
||||||
Sbjct: 37233791 agccag 37233796
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 37232962 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 37233021
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 37233022 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 37233081
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 37233082 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 37233141
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 37233142 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 37233201
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 37233202 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 37233261
Query: 337 caactacct 345
|||||||||
Sbjct: 37233262 caactacct 37233270
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 28528981 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 28529040
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 28529041 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 28529090
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 11207328 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 11207387
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11207388 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 11207432
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 37233296 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 37233355
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 37233356 tgggacgacttggccaggtacctcaag 37233382
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 26879369 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 26879428
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 26879429 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 26879473
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 37229734 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 37229793
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 37229794 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 37229844
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 37229525 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 37229584
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 37229585 tgggacgacct 37229595
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 11207187 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 11207236
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 37229381 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 37229440
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 37229441 ggcctctcatccc 37229453
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 26879237 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 26879284
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 26879106 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 26879164
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 11207042 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 11207090
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 37229250 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 37229309
Query: 156 cg 157
||
Sbjct: 37229310 cg 37229311
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 28528837 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 28528879
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 11206845 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 11206904
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 11206905 aactacgccttcgtcaacctcgccttcctc 11206934
Score = 58.1 bits (29), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacatcgaga 432
|||| ||||||||||| || ||||||||| ||||||||||||| ||||
Sbjct: 28348885 gccccctcggcgacgcggtgctcgacggcatcgacttcgacatagaga 28348838
Score = 58.1 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 591 acgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||| |||||||||||||||||||||| || ||||||||||
Sbjct: 28348699 acgtttgggtgcagttctacaacaaccggcagtgccagtac 28348659
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 28528502 catcgccgtctactggggccagaacggcagcgaggg 28528537
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 37229997 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 37230043
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 26878903 catcgccgtgtactggggccagaacggcgacgaggg 26878938
Score = 44.2 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgc 552
|||||||||||||||| |||||||||
Sbjct: 28348763 gcgccgcagtgcccgtacccggacgc 28348738
>dbj|AK103976.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F10, full
insert sequence
Length = 1134
Score = 290 bits (146), Expect = 9e-076
Identities = 311/366 (84%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 589 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 648
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 649 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 708
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 709 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 768
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 769 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 828
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 829 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 888
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 889 ttgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 948
Query: 887 agccag 892
||||||
Sbjct: 949 agccag 954
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 120 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 179
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 180 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 239
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 240 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 299
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 300 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 359
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 360 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 419
Query: 337 caactacct 345
|||||||||
Sbjct: 420 caactacct 428
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 454 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 513
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 514 tgggacgacttggccaggtacctcaag 540
>ref|NM_190699.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 891
Score = 286 bits (144), Expect = 1e-074
Identities = 288/336 (85%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 535 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 594
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 595 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 654
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 655 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 714
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || || ||| | ||||||| ||||||||||||||| | ||||||||||
Sbjct: 715 ctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctg 774
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 775 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 834
Query: 827 tccaggtactacgacgggctcacggggtacagcgac 862
|| ||||||| ||||||||||||||||||||||||
Sbjct: 835 tcgcggtactatgacgggctcacggggtacagcgac 870
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 66 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 125
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 126 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 185
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 186 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 245
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 246 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 305
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 306 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 365
Query: 337 caactacct 345
|||||||||
Sbjct: 366 caactacct 374
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 400 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 459
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 460 tgggacgacttggccaggtacctcaag 486
>dbj|AB003195.1| Oryza sativa (japonica cultivar-group) mRNA for basic class III
chitinase OsChib3b, complete cds
Length = 1109
Score = 274 bits (138), Expect = 6e-071
Identities = 309/366 (84%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 590 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 649
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 650 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 709
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 710 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 769
Query: 707 ctcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
|||||||| || | ||| | ||||||| ||| |||||||||| | ||||||||||
Sbjct: 770 ctcggcctgccggtcgccgcggaggccgccggctccgggttcgtggagacgagcgacctg 829
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 830 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 889
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 890 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 949
Query: 887 agccag 892
||||||
Sbjct: 950 agccag 955
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 121 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 180
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 181 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 240
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 241 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 300
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 301 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 360
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 361 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 420
Query: 337 caactacct 345
|||||||||
Sbjct: 421 caactacct 429
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 514
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 515 tgggacgacttggccaggtacctcaag 541
>gb|CB661162.1|CB661162 OSJNEd03K16.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03K16 5', mRNA sequence
Length = 751
Score = 209 bits (105), Expect = 3e-051
Identities = 258/309 (83%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 103 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 162
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 163 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 222
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 223 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 282
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 283 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 342
Query: 277 cggcagctacgggctctcgtcccgggccgacgcccggagcgtcgcggcgtacctctggga 336
||||| |||||| || || ||||| | ||||||| | |||||||||||||| ||| |
Sbjct: 343 cggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaa 402
Query: 337 caactacct 345
|||||||||
Sbjct: 403 caactacct 411
Score = 175 bits (88), Expect = 5e-041
Identities = 157/180 (87%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || ||||||
Sbjct: 572 gcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttc 631
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcgagcgccggc 646
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 632 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggc 691
Query: 647 gtgggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttc 706
||||||| |||||||| |||||| |||||||||||| ||| |||||| |||||||||
Sbjct: 692 gtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttc 751
Score = 125 bits (63), Expect = 4e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 ctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtac 496
Query: 450 tgggacgacctggcccggttcctcaag 476
||||||||| ||||| ||| |||||||
Sbjct: 497 tgggacgacttggccaggtacctcaag 523
>gb|AU064547.2|AU064547 AU064547 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31971, mRNA sequence
Length = 401
Score = 195 bits (98), Expect = 5e-047
Identities = 230/274 (83%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 102 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgac 161
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 162 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 221
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||
Sbjct: 222 ggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgc 281
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 282 cgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 341
Query: 277 cggcagctacgggctctcgtcccgggccgacgcc 310
||||| |||||| || || ||||| | |||||||
Sbjct: 342 cggcaactacggcctgtcctcccgcgacgacgcc 375
>gb|C96640.1|C96640 C96640 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10501_8Z, mRNA sequence
Length = 522
Score = 175 bits (88), Expect = 5e-041
Identities = 253/306 (82%), Gaps = 4/306 (1%)
Strand = Plus / Plus
Query: 590 tacgtgtgggtgcagttctacaacaacccgccgtgcc-agtacagcgcgagcgccggcgt 648
||||||||||||||||||||||||||||||||||||| |||||||| || | |||| |
Sbjct: 35 tacgtgtgggtgcagttctacaacaacccgccgtgcccagtacagctcgtccaacggcnt 94
Query: 649 gggcagcctggcgaaagcgtgggcgcagtggacgtccatcagggcggggcgggtgttcc- 707
|| || |||||||| |||||| ||||||||| || ||| |||||| |||||||| |
Sbjct: 95 ggncaacctggcgancgcgtggaagcagtggacntcgatcccggcgggacgggtgttncc 154
Query: 708 -tcggcctccccgccgcgccccaggccgctggcagcgggttcgtgccggcgagcgacctc 766
||||||| || || ||| | ||||||| |||| |||||||||| | ||||||||||
Sbjct: 155 ttcggcctgccggcggcggcggaggccgccggca-cgggttcgtggagacgagcgacctg 213
Query: 767 gtggcgcaggtgctgccggtggtcaagaactccaccaagtacgggggcatcatgctctgg 826
||| || ||||||| || ||||| ||||| || |||||||||| || |||||||| |||
Sbjct: 214 gtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtgg 273
Query: 827 tccaggtactacgacgggctcacggggtacagcgacgcggtcaagtcctacgtgtgagct 886
|| ||||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||
Sbjct: 274 tcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagct 333
Query: 887 agccag 892
||||||
Sbjct: 334 agccag 339
>gb|D41935.1|D41935 RICS4960A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 405
Score = 155 bits (78), Expect = 5e-035
Identities = 200/240 (83%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | | | |||||| ||||| ||
Sbjct: 125 catcgcgatctactggggccagaacggcaacgagggcacgctngcgcagacgtgcgcgac 184
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||||| |||||||||||| || |||||||||||| ||||||||
Sbjct: 185 cggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgcc 244
Query: 157 ggcgcttaacctggcgggccactgcgacccagcgagcggcgggtgcacgggcgtgggcgc 216
|| ||| |||||||| |||||||||||||| ||| ||| | ||| |||||||||||
Sbjct: 245 ggtgctgaacctggccggccactgcgacccggcgtcgaacggttncaccggcgtgggcgc 304
Query: 217 ggacgtcaaggcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgt 276
||| ||||| |||||||| || | ||| |||||||| || |||| |||||||| |||||
Sbjct: 305 -gacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgt 363
>dbj|AK111427.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H04, full
insert sequence
Length = 1542
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 904 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 963
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 1013
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 760 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 802
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 425 catcgccgtctactggggccagaacggcagcgaggg 460
>gb|AACV01002143.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002143, whole
genome shotgun sequence
Length = 64242
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 13566 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 13625
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 13626 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 13675
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 13422 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 13464
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 13087 catcgccgtctactggggccagaacggcagcgaggg 13122
>ref|NM_192142.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2061
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 569 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 628
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 678
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 425 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 467
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 90 catcgccgtctactggggccagaacggcagcgaggg 125
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C09
Length = 170226
Score = 155 bits (78), Expect = 5e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 522 ccgctgcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggc 581
|||| |||||||||||||||| |||||||||||| || | | | ||||||||||||||||
Sbjct: 55420 ccgccgcgccgcagtgcccgtacccggacgcgtccctcgccgcggcgctcgccacggggc 55479
Query: 582 tgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 55480 tgttcgaccacgtgtgggtgcagttctacaacaacccgccgtgccagtac 55529
Score = 64.1 bits (32), Expect = 2e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 385 gcccnctcggcgacgccgtcctcgacggcgtcgacttcgacat 427
|||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 55276 gcccgctcggcgacgccgtgctcgacggcgtcgatttcgacat 55318
Score = 56.1 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| ||||||||||||||||||||| ||||||
Sbjct: 54941 catcgccgtctactggggccagaacggcagcgaggg 54976
>dbj|AP002881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0035H10
Length = 109475
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 106061 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 106120
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106121 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 106165
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 105920 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 105969
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 105775 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 105823
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 105578 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 105637
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 105638 aactacgccttcgtcaacctcgccttcctc 105667
>dbj|AK062603.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G12, full
insert sequence
Length = 1239
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 680 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 739
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 784
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 539 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 588
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 394 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 442
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 197 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 256
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 257 aactacgccttcgtcaacctcgccttcctc 286
>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1146F03
Length = 137047
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 99121 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 99180
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99181 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 99225
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 98980 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 99029
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 98835 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 98883
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 98638 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 98697
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 98698 aactacgccttcgtcaacctcgccttcctc 98727
>gb|AACV01000830.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000830, whole
genome shotgun sequence
Length = 32756
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Minus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 29601 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 29542
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29541 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 29497
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 29742 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 29693
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 29887 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 29839
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 30084 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 30025
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 30024 aactacgccttcgtcaacctcgccttcctc 29995
>ref|XM_462852.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 954
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 589 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 648
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 693
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 448 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 497
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 303 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 351
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 106 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 165
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 166 aactacgccttcgtcaacctcgccttcctc 195
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 1154797 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 1154856
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154857 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 1154901
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 1154656 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 1154705
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 1154511 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 1154559
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 1154314 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 1154373
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 1154374 aactacgccttcgtcaacctcgccttcctc 1154403
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 129 bits (65), Expect = 3e-027
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||||||||||||| || | | |||| ||||||| ||| || ||||||
Sbjct: 11377268 gcgccgcagtgcccgttcccggaccagtgggtcggcaaggcgctcgacaccggcctgttc 11377327
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11377328 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 11377372
Score = 76.0 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgg 439
||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 11377127 ctcggcgacgcggtgctcgacggcgtcgacttcgacatcgagggcggcgg 11377176
Score = 66.1 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 238 catgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||||||||| |||||||||||||| |||| |||| |||||
Sbjct: 11376982 catgggcgtcaaggtcctcctctccatcggcggcggcgccggcggctac 11377030
Score = 64.1 bits (32), Expect = 2e-007
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 42 gccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccacgggm 100
|||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 11376785 gccatctactggggccagaacggcaacgagggcaccctcgccgacacctgcgccacgggc 11376844
Query: 101 aactacaggttcgtcaacgtggccttcctc 130
|||||| ||||||||| | |||||||||
Sbjct: 11376845 aactacgccttcgtcaacctcgccttcctc 11376874
>gb|D22210.1|D22210 RICC10501A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10501_1A, mRNA sequence
Length = 257
Score = 113 bits (57), Expect = 2e-022
Identities = 126/150 (84%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggggasg-tggsgcagacctgcgccac 96
|||||| ||||||||||||||||||||||||||||| | | ||| |||||| ||||| ||
Sbjct: 107 catcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcnac 166
Query: 97 gggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgcc 156
|| || ||||||||||| | ||||| |||||| || ||||||||||| ||||||||
Sbjct: 167 cggtaattacaggttcgtnatcgtggncttcctgcctgttttcggcaagggccagacgcc 226
Query: 157 ggcgcttaacctggcgggccactgcgaccc 186
|| ||| |||||||| || |||||| ||||
Sbjct: 227 ggtgctgaacctggccggacactgcaaccc 256
>gb|CV723702.1|CV723702 root--04-H23.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-H23, mRNA sequence
Length = 477
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 267 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 326
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 371
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 135 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 182
Score = 60.1 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 245 gtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 9 gtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 62
>dbj|AB006188.3| Oryza sativa (japonica cultivar-group) mRNA for acidic class III
chitinase OsChib3a, complete cds
Length = 1217
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 614 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 673
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 674 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 718
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 482 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 529
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 351 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 409
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 148 catcgccgtgtactggggccagaacggcgacgaggg 183
>dbj|AB026998.1| Oryza sativa (japonica cultivar-group) mRNA for acidic class III
chitinase OsChib3a, complete cds
Length = 1143
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 563 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 622
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 623 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 667
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 431 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 478
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 300 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 358
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 97 catcgccgtgtactggggccagaacggcgacgaggg 132
>dbj|D55713.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
cds
Length = 1195
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 592 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 651
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 652 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 696
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 460 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 507
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 329 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 387
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 126 catcgccgtgtactggggccagaacggcgacgaggg 161
>dbj|AK100973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D03, full
insert sequence
Length = 1237
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 629 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 688
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 689 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 733
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 497 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 544
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 366 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 424
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 163 catcgccgtgtactggggccagaacggcgacgaggg 198
>gb|AACV01002038.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002038, whole
genome shotgun sequence
Length = 16859
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 15164 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 15223
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 15224 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 15268
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 15032 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 15079
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 14901 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 14959
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 14698 catcgccgtgtactggggccagaacggcgacgaggg 14733
>ref|NM_192471.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 906
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 550 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 609
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 610 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 654
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 418 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 465
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 287 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 345
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 84 catcgccgtgtactggggccagaacggcgacgaggg 119
>dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0684E06
Length = 147004
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 115018 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 115077
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 115078 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 115122
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 114886 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 114933
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 114755 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 114813
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 114552 catcgccgtgtactggggccagaacggcgacgaggg 114587
>dbj|AP004364.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0445H04
Length = 202821
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
|||||||||||||| | |||||||||||||||||| | ||||| ||||||||||||
Sbjct: 61014 gcgccgcagtgcccctacccggacgcgtcgctggggccggcgctgcagacggggctgttc 61073
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtac 631
||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 61074 gacagcgtgtgggtgcaattctacaacaacccgccgtgccagtac 61118
Score = 72.0 bits (36), Expect = 6e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggc 437
|||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 60882 ctcggcgacgccgtgctggacggcgtcgacttcgacatcgagaccggc 60929
Score = 70.0 bits (35), Expect = 2e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 240 tgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctacgggctctcgtcc 298
|||||||||||||| | || ||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 60751 tgggcgtcaaggtcatcctgtccatcggcggcggcgccggcagctacgggctgtcgtcc 60809
Score = 48.2 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 38 catcgccatctactggggccagaacggcaacgaggg 73
||||||| | |||||||||||||||||| |||||||
Sbjct: 60548 catcgccgtgtactggggccagaacggcgacgaggg 60583
>gb|AU097438.1|AU097438 AU097438 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4960, mRNA sequence
Length = 321
Score = 109 bits (55), Expect = 3e-021
Identities = 127/151 (84%)
Strand = Plus / Plus
Query: 742 cgggttcgtgccggcgagcgacctcgtggcgcaggtgctgccggtggtcaagaactccac 801
|||||||||| | |||||||||| ||| || ||||||| || ||||| ||||| || |
Sbjct: 1 cgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcc 60
Query: 802 caagtacgggggcatcatgctctggtccaggtactacgacgggctcacggggtacagcga 861
||||||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 61 caagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcga 120
Query: 862 cgcggtcaagtcctacgtgtgagctagccag 892
| ||| |||||| ||| ||||||||||||
Sbjct: 121 caaggtgaagtccagcgtttgagctagccag 151
>gb|AU166148.1|AU166148 AU166148 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31971, mRNA sequence
Length = 386
Score = 103 bits (52), Expect = 2e-019
Identities = 126/151 (83%)
Strand = Plus / Plus
Query: 742 cgggttcgtgccggcgagcgacctcgtggcgcaggtgctgccggtggtcaagaactccac 801
|||||||||| | |||||| ||| ||| || ||||||| || ||||| ||||| || |
Sbjct: 1 cgggttcgtggagacgagcgncctggtgtcgaaggtgctccccgtggtgaagaagtctcc 60
Query: 802 caagtacgggggcatcatgctctggtccaggtactacgacgggctcacggggtacagcga 861
||||||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 61 caagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcga 120
Query: 862 cgcggtcaagtcctacgtgtgagctagccag 892
| ||| |||||| ||| ||||||||||||
Sbjct: 121 caaggtgaagtccagcgtttgagctagccag 151
>dbj|AK111415.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G02, full
insert sequence
Length = 1346
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 615 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 674
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 675 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 725
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 486 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 545
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 546 tgggacgacct 556
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 342 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 401
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 402 ggcctctcatccc 414
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 211 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 270
Query: 156 cg 157
||
Sbjct: 271 cg 272
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 878 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 924
>ref|NM_190698.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 894
Score = 101 bits (51), Expect = 6e-019
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggacgcgtcgctgggcaccgcgctcgccacggggctgttc 586
||||||||||||||||||||||||| || | ||| |||| || |||||||||||||
Sbjct: 544 gcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttc 603
Query: 587 gactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagcgcg 637
||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 604 gacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcg 654
Score = 85.9 bits (43), Expect = 4e-014
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 390 ctcggcgacgccgtcctcgacggcgtcgacttcgacatcgagagcggcgggggcatgtac 449
|||||||||||||||||||||||| ||||||||||||||||| |||||| | || || |
Sbjct: 415 ctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttc 474
Query: 450 tgggacgacct 460
|||||||||||
Sbjct: 475 tgggacgacct 485
Score = 74.0 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 227 gcgtgccagcgcatgggcgtcaaggtcctgctctccatcggcgggggcgtcggcagctac 286
|||||||||||| || || ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 271 gcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctac 330
Query: 287 gggctctcgtccc 299
|| ||||| ||||
Sbjct: 331 ggcctctcatccc 343
Score = 64.1 bits (32), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 96 cgggmaactacaggttcgtcaacgtggccttcctccccacgttcggcaaggggcagacgc 155
|||| |||||| |||||||| | | ||||||||||||| |||||||||||| |||||||
Sbjct: 140 cgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgc 199
Query: 156 cg 157
||
Sbjct: 200 cg 201
Score = 54.1 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 796 ctccaccaagtacgggggcatcatgctctggtccaggtactacgacg 842
|||| |||||||||| ||| ||||||| ||||||| |||||||||||
Sbjct: 807 ctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacg 853
>gb|AU102124.1|AU102124 AU102124 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10728, mRNA sequence
Length = 671
Score = 76.0 bits (38), Expect = 4e-011
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 575 acggggctgttcgactacgtgtgggtgcagttctacaacaacccg-ccgtgccagtac 631
||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 97 acggggctgttcgacagcgtgtgggtgcaattctacaacaacccgnccgtgccagtac 154
>dbj|AP004349.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0684A03
Length = 64705
Score = 74.0 bits (37), Expect = 2e-010
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgag 431
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 42898 tcggcgacgccgtgctcgacggcgtcgacttcgacatcgag 42938
Score = 48.2 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggac 550
||||||||||||||||||||||||
Sbjct: 43032 gcgccgcagtgcccgttcccggac 43055
>gb|AACV01015901.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015901,
whole genome shotgun sequence
Length = 18420
Score = 74.0 bits (37), Expect = 2e-010
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgag 431
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 477 tcggcgacgccgtgctcgacggcgtcgacttcgacatcgag 517
Score = 48.2 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggac 550
||||||||||||||||||||||||
Sbjct: 611 gcgccgcagtgcccgttcccggac 634
>ref|XM_477712.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 810
Score = 74.0 bits (37), Expect = 2e-010
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 391 tcggcgacgccgtcctcgacggcgtcgacttcgacatcgag 431
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 tcggcgacgccgtgctcgacggcgtcgacttcgacatcgag 360
Score = 48.2 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 527 gcgccgcagtgcccgttcccggac 550
||||||||||||||||||||||||
Sbjct: 454 gcgccgcagtgcccgttcccggac 477
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,340,955
Number of Sequences: 438736
Number of extensions: 1340955
Number of successful extensions: 12849
Number of sequences better than 0.5: 173
Number of HSP's better than 0.5 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11491
Number of HSP's gapped (non-prelim): 1255
length of query: 1078
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1057
effective length of database: 2,791,206,460
effective search space: 2950305228220
effective search space used: 2950305228220
T: 0
A: 0
X1: 11 (21.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 22 (44.2 bits)