BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8161196.3.1
(825 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB001888.1| Oryza sativa (japonica cultivar-group) mRNA... 278 5e-072
dbj|AK071630.1| Oryza sativa (japonica cultivar-group) cDNA... 278 5e-072
gb|AACV01005318.1| Oryza sativa (japonica cultivar-group) c... 278 5e-072
ref|XM_467550.1| Oryza sativa (japonica cultivar-group), mRNA 278 5e-072
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 278 5e-072
dbj|AP005113.3| Oryza sativa (japonica cultivar-group) geno... 278 5e-072
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 278 5e-072
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 278 5e-072
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 278 5e-072
gb|CF310064.1|CF310064 ABF--04-I13.b1 ABF3-overexpressing t... 242 3e-061
gb|CB671286.1|CB671286 OSJNEe04M16.f OSJNEe Oryza sativa (j... 194 5e-047
gb|CB661656.1|CB661656 OSJNEd04N20.f OSJNEd Oryza sativa (j... 149 3e-033
dbj|AB157565.1| Oryza sativa (japonica cultivar-group) DNA,... 147 1e-032
dbj|AP003942.1| Oryza sativa (japonica cultivar-group) chro... 129 3e-027
dbj|AK072192.1| Oryza sativa (japonica cultivar-group) cDNA... 129 3e-027
dbj|AK098865.1| Oryza sativa (japonica cultivar-group) cDNA... 129 3e-027
dbj|AK121630.1| Oryza sativa (japonica cultivar-group) cDNA... 129 3e-027
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 129 3e-027
gb|AACV01013653.1| Oryza sativa (japonica cultivar-group) c... 129 3e-027
dbj|AP003524.3| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
gb|CB669430.1|CB669430 OSJNEe01O11.f OSJNEe Oryza sativa (j... 107 1e-020
gb|D41222.1|D41222 RICS3574A Rice shoot Oryza sativa (japon... 50 0.002
>dbj|AB001888.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger
protein, complete cds, clone:S3574
Length = 2047
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 247 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 306
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 307 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 366
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 367 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 426
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 427 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 486
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 487 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 546
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 547 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 606
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 607 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 658
>dbj|AK071630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D03, full
insert sequence
Length = 2024
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 295 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 354
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 355 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 414
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 415 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 474
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 475 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 534
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 535 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 594
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 595 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 654
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 655 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 706
>gb|AACV01005318.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005318, whole
genome shotgun sequence
Length = 29293
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 4229 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 4288
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 4289 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 4348
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 4349 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 4408
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 4409 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 4468
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 4469 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 4528
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 4529 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 4588
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 4589 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 4640
>ref|XM_467550.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2024
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 295 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 354
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 355 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 414
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 415 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 474
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 475 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 534
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 535 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 594
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 595 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 654
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 655 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 706
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 5279784 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 5279843
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 5279844 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 5279903
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 5279904 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 5279963
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 5279964 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 5280023
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 5280024 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 5280083
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 5280084 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 5280143
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 5280144 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 5280195
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0685G12
Length = 149155
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 94382 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 94441
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 94442 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 94501
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 94502 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 94561
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 94562 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 94621
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 94622 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 94681
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 94682 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 94741
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 94742 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 94793
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 16618603 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 16618662
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 16618663 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 16618722
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 16618723 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 16618782
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 16618783 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 16618842
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 16618843 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 16618902
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 16618903 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 16618962
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 16618963 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 16619014
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 30071667 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 30071726
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 30071727 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 30071786
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 30071787 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 30071846
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 30071847 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 30071906
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 30071907 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 30071966
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 30071967 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 30072026
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 30072027 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 30072078
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 278 bits (140), Expect = 5e-072
Identities = 344/412 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 30114785 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 30114844
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 30114845 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 30114904
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 30114905 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 30114964
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 30114965 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 30115024
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactcagggt 651
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 30115025 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggt 30115084
Query: 652 gcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgtag 711
||||||| || |||||||| |||||||||||||| |||| || |||||||| |||||||
Sbjct: 30115085 gcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgtag 30115144
Query: 712 cagctgagcccaactatgaggatggactaagcatgatgacaattgatgacaa 763
| || ||||| |||| |||||| ||| ||| |||||||| ||| |||||||
Sbjct: 30115145 ctgcggagccaaactgtgaggaaggaataaacatgatgagcattaatgacaa 30115196
>gb|CF310064.1|CF310064 ABF--04-I13.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--04-I13, mRNA sequence
Length = 629
Score = 242 bits (122), Expect = 3e-061
Identities = 303/362 (83%), Gaps = 1/362 (0%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 262 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 321
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 322 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 381
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 382 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 441
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 442 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 501
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttactc-aggg 650
||| |||||||| ||| ||||||||||||||||| |||||||||||||||| |||
Sbjct: 502 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttactcggggg 561
Query: 651 tgcccatcatcagcagagctttcgagaatctggtcatttattaccgatatcccgactgta 710
|||||||| || |||||||| |||||||||||||| |||| || |||||||| ||||||
Sbjct: 562 tgcccatcgtcggcagagctctcgagaatctggtcctttagtatggatatcccaactgta 621
Query: 711 gc 712
||
Sbjct: 622 gc 623
>gb|CB671286.1|CB671286 OSJNEe04M16.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04M16 5', mRNA sequence
Length = 825
Score = 194 bits (98), Expect = 5e-047
Identities = 245/294 (83%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 532 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 591
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 592 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 651
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 652 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 711
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| |
Sbjct: 712 cagcagtccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatggac 771
Query: 592 atgatgcagcatcaggggcttctgggcataaaaggcaggccataaactgttact 645
||| |||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct: 772 atggggcagcatcctcagctgctgggcataaaaggcagaccataaactgttact 825
>gb|CB661656.1|CB661656 OSJNEd04N20.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd04N20 5', mRNA sequence
Length = 859
Score = 149 bits (75), Expect = 3e-033
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| |||| |||||| || | |||||||||||| |||
Sbjct: 611 tactgtacaggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtct 670
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 671 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 730
Query: 472 atgcactgtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctg 531
|||| || || || || |||| ||| |||||||||||||||||||||| | ||||||||
Sbjct: 731 atgccctttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctg 790
Query: 532 catcagtccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatgggc 591
|| ||||||| |||||||| || ||||| |||||||||| ||||||||| |||||||| |
Sbjct: 791 cagcagtccgttgtcttgaagagaacacctcactttgcccaaactgtgactggaatggac 850
Query: 592 atg 594
|||
Sbjct: 851 atg 853
>dbj|AB157565.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29560T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1092, genomic survey sequence
Length = 232
Score = 147 bits (74), Expect = 1e-032
Identities = 191/230 (83%)
Strand = Plus / Minus
Query: 359 caggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcag 418
||||| ||||| | |||| |||| |||||| || | |||||||||||| |||| ||| |
Sbjct: 230 caggaccatggatgctctttgtgatttctgcagggagcaaaggtcaatggtctattgccg 171
Query: 419 atcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagctaatgcact 478
||| ||||| ||||| |||||||| || || || |||| || |||||||| ||||| ||
Sbjct: 170 atcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagccaatgccct 111
Query: 479 gtctcggcgtcatagaaggacccttctttgtgatcgttgtggtttacagcctgcatcagt 538
|| || || |||| ||| |||||||||||||||||||||| | |||||||||| ||||
Sbjct: 110 ttcccgacgccatacaagaacccttctttgtgatcgttgtgttggacagcctgcagcagt 51
Query: 539 ccgatgtcttgaggacaacacatcactttgccaaaactgtgattggaatg 588
||| |||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct: 50 ccgttgtcttgaagagaacacctcactttgccaaaactgtgactggaatg 1
>dbj|AP003942.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1116_C09, ***
SEQUENCING IN PROGRESS ***
Length = 165900
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Plus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 103219 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 103278
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 103279 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 103338
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 103339 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 103398
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 103399 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 103458
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 103459 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 103518
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 103519 caaaaatctggacattt 103535
>dbj|AK072192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152B04, full
insert sequence
Length = 2245
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Plus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 302 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 361
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 362 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 421
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 422 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 481
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 482 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 541
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 542 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 601
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 602 caaaaatctggacattt 618
>dbj|AK098865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A08, full
insert sequence
Length = 2204
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Plus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 329 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 388
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 389 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 448
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 449 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 508
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 509 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 568
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 569 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 628
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 629 caaaaatctggacattt 645
>dbj|AK121630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050D14, full
insert sequence
Length = 2203
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Plus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 327 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 386
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 387 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 446
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 447 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 506
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 507 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 566
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 567 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 626
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 627 caaaaatctggacattt 643
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Minus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 380957 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 380898
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 380897 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 380838
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 380837 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 380778
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 380777 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 380718
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 380717 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 380658
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 380657 caaaaatctggacattt 380641
>gb|AACV01013653.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013653, whole
genome shotgun sequence
Length = 21617
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Minus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 7930 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 7871
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 7870 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 7811
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 7810 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 7751
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 7750 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 7691
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 7690 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 7631
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 7630 caaaaatctggacattt 7614
>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0501G08
Length = 173505
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Minus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 1285 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 1226
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 1225 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 1166
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 1165 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 1106
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 1105 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 1046
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 1045 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 986
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 985 caaaaatctggacattt 969
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Minus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 2237802 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 2237743
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 2237742 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 2237683
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 2237682 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 2237623
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 2237622 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 2237563
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 2237562 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 2237503
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 2237502 caaaaatctggacattt 2237486
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Minus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 10845454 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 10845395
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 10845394 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 10845335
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 10845334 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 10845275
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 10845274 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 10845215
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 10845214 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 10845155
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 10845154 caaaaatctggacattt 10845138
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 129 bits (65), Expect = 3e-027
Identities = 254/317 (80%)
Strand = Plus / Minus
Query: 373 ctctctgtggtttctgtgggaaacaaaggtcaatgatctactgcagatcggatgcggcat 432
|||| |||| |||||| ||| | || ||||| ||| | || ||| |||| ||||| ||||
Sbjct: 10917203 ctctttgtgatttctgcggggagcagaggtctatggtttattgccgatcagatgcagcat 10917144
Query: 433 cattgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcata 492
| ||||||||||| || ||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 10917143 ccttgtgcttatcgtgtgaccgtaatgtgcattcagctaatgctctttctcggcgccata 10917084
Query: 493 gaaggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgagg 552
|||||| ||||| |||||| | |||| || ||||||||| ||||| || |||| |
Sbjct: 10917083 caaggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtag 10917024
Query: 553 acaacacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggctt 612
| || | || ||||||||||| |||||||||||||||||| ||| | || |||
Sbjct: 10917023 aaaatgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctg 10916964
Query: 613 ctgggcataaaaggcaggccataaactgttactcagggtgcccatcatcagcagagcttt 672
|||| ||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 10916963 ctggtcataagaggcagaccataaactgctactcagggtgcccatcatcttcagaacttt 10916904
Query: 673 cgagaatctggtcattt 689
| | ||||||| |||||
Sbjct: 10916903 caaaaatctggacattt 10916887
>gb|CB669430.1|CB669430 OSJNEe01O11.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01O11 5', mRNA sequence
Length = 812
Score = 107 bits (54), Expect = 1e-020
Identities = 183/226 (80%)
Strand = Plus / Plus
Query: 436 tgtgcttatcatgcgaccgtagcgttcattcagctaatgcactgtctcggcgtcatagaa 495
|||||||||| || ||||||| || |||||||||||||| || |||||||| |||| ||
Sbjct: 1 tgtgcttatcttgtgaccgtaatgtgcattcagctaatgctctttctcggcgccatacaa 60
Query: 496 ggacccttctttgtgatcgttgtggtttacagcctgcatcagtccgatgtcttgaggaca 555
|||| ||||| |||||| | |||| || ||||||||| ||||| || |||| || |
Sbjct: 61 ggacacttctgtgtgatagatgtgcttcacagcctgccatggtccgctgccttgtagaaa 120
Query: 556 acacatcactttgccaaaactgtgattggaatgggcatgatgcagcatcaggggcttctg 615
| | || ||||||||||| |||||||||||||||||| ||| | || ||| |||
Sbjct: 121 atgcctcgctttgccaaaattgtgattggaatgggcatagtgctgggtcttcagctgctg 180
Query: 616 ggcataaaaggcaggccataaactgttactcagggtgcccatcatc 661
| ||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 181 gtcataagaggcagaccataaactgctactcagggtgcccatcatc 226
>gb|D41222.1|D41222 RICS3574A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 389
Score = 50.1 bits (25), Expect = 0.002
Identities = 99/124 (79%)
Strand = Plus / Plus
Query: 352 tactgtccaggatcatggttcctctctgtggtttctgtgggaaacaaaggtcaatgatct 411
|||||| ||||| ||||| | |||| ||| |||||| || | |||||||||||| |||
Sbjct: 246 tactgtacaggaccatggatgctctttgtnatttctgcagggagcaaaggtcaatggtct 305
Query: 412 actgcagatcggatgcggcatcattgtgcttatcatgcgaccgtagcgttcattcagcta 471
| ||| |||| ||||| ||||| |||||||| || || || |||| || |||||||| |
Sbjct: 306 attgccgatcagatgcagcatccttgtgcttgtcgtgtgatcgtaatgtgcattcagcca 365
Query: 472 atgc 475
||||
Sbjct: 366 atgc 369
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,057,879
Number of Sequences: 438736
Number of extensions: 1057879
Number of successful extensions: 7060
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6919
Number of HSP's gapped (non-prelim): 129
length of query: 825
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 804
effective length of database: 2,791,206,460
effective search space: 2244129993840
effective search space used: 2244129993840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)