BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB656225.1|CB656225 OSJNEc10F02.r OSJNEc Oryza sativa (j... 200 6e-049
gb|CB656618.1|CB656618 OSJNEc11D03.r OSJNEc Oryza sativa (j... 200 6e-049
gb|CB656624.1|CB656624 OSJNEc11D06.r OSJNEc Oryza sativa (j... 200 6e-049
gb|CB666963.1|CB666963 OSJNEd14B09.r OSJNEd Oryza sativa (j... 200 6e-049
gb|CB669732.1|CB669732 OSJNEe02H04.r OSJNEe Oryza sativa (j... 200 6e-049
gb|CB674097.1|CB674097 OSJNEe08P21.r OSJNEe Oryza sativa (j... 200 6e-049
gb|CB680995.1|CB680995 OSJNEf06L02.r OSJNEf Oryza sativa (j... 200 6e-049
dbj|AK060834.1| Oryza sativa (japonica cultivar-group) cDNA... 200 6e-049
gb|CB656753.1|CB656753 OSJNEc11H09.r OSJNEc Oryza sativa (j... 184 4e-044
gb|CB656658.1|CB656658 OSJNEc11E05.r OSJNEc Oryza sativa (j... 161 5e-037
ref|XM_475503.1| Oryza sativa (japonica cultivar-group), p... 157 8e-036
gb|CB681050.1|CB681050 OSJNEf06N02.r OSJNEf Oryza sativa (j... 123 1e-025
gb|CB652977.1|CB652977 OSJNEc03I24.f OSJNEc Oryza sativa (j... 117 7e-024
gb|CB656623.1|CB656623 OSJNEc11D06.f OSJNEc Oryza sativa (j... 117 7e-024
gb|CB656752.1|CB656752 OSJNEc11H09.f OSJNEc Oryza sativa (j... 117 7e-024
gb|CB656617.1|CB656617 OSJNEc11D03.f OSJNEc Oryza sativa (j... 111 4e-022
gb|CF325948.1|CF325948 JMT1--04-K21.g1 AtJMT-overexpressing... 98 7e-018
gb|AC108522.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|AC129719.2| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|AACV01012526.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
ref|NT_107215.1| Oryza sativa (japonica cultivar-group) 94 1e-016
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|CB656657.1|CB656657 OSJNEc11E05.f OSJNEc Oryza sativa (j... 84 1e-013
gb|CB669118.1|CB669118 OSJNEe01G01.r OSJNEe Oryza sativa (j... 72 4e-010
gb|CF335788.1|CF335788 JMT--05-J17.g1 AtJMT-overexpressing ... 56 2e-005
gb|AZ135029.1|AZ135029 OSJNBb0114H13f CUGI Rice BAC Library... 52 3e-004
gb|AU174939.1|AU174939 AU174939 Rice cDNA from leaf Oryza s... 52 3e-004
gb|CB645144.1|CB645144 OSJNEb06K17.r OSJNEb Oryza sativa (j... 50 0.001
gb|CB650401.1|CB650401 OSJNEb14N05.r OSJNEb Oryza sativa (j... 50 0.001
gb|CB655819.1|CB655819 OSJNEc09J08.r OSJNEc Oryza sativa (j... 50 0.001
gb|CB660104.1|CB660104 OSJNEd01J08.r OSJNEd Oryza sativa (j... 50 0.001
gb|CB666943.1|CB666943 OSJNEd14A23.f OSJNEd Oryza sativa (j... 50 0.001
gb|CB666944.1|CB666944 OSJNEd14A23.r OSJNEd Oryza sativa (j... 50 0.001
dbj|AK099626.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
ref|NM_190260.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
gb|AZ130351.1|AZ130351 OSJNBb0103N23f CUGI Rice BAC Library... 46 0.021
gb|AC130732.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
gb|AACV01011121.1| Oryza sativa (japonica cultivar-group) c... 44 0.085
ref|XM_476124.1| Oryza sativa (japonica cultivar-group), p... 44 0.085
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 44 0.085
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
dbj|AP003316.4| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|AACV01002843.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.33
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.33
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
>gb|CB656225.1|CB656225 OSJNEc10F02.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10F02 3', mRNA sequence
Length = 824
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 754 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 695
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 694 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 635
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 634 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 575
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 574 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 515
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 514 aggcagggaccgttacagggatagatata 486
>gb|CB656618.1|CB656618 OSJNEc11D03.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11D03 3', mRNA sequence
Length = 843
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 644 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 585
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 584 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 525
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 524 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 465
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 464 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 405
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 404 aggcagggaccgttacagggatagatata 376
>gb|CB656624.1|CB656624 OSJNEc11D06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11D06 3', mRNA sequence
Length = 831
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 650 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 591
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 590 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 531
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 530 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 471
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 470 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 411
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 410 aggcagggaccgttacagggatagatata 382
>gb|CB666963.1|CB666963 OSJNEd14B09.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14B09 3', mRNA sequence
Length = 819
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 759 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 700
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 699 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 640
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 639 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 580
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 579 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 520
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 519 aggcagggaccgttacagggatagatata 491
>gb|CB669732.1|CB669732 OSJNEe02H04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02H04 3', mRNA sequence
Length = 764
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 700 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 641
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 640 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 581
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 580 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 521
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 520 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 461
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 460 aggcagggaccgttacagggatagatata 432
>gb|CB674097.1|CB674097 OSJNEe08P21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08P21 3', mRNA sequence
Length = 893
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 726 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 667
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 666 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 607
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 606 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 547
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 546 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 487
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 486 aggcagggaccgttacagggatagatata 458
>gb|CB680995.1|CB680995 OSJNEf06L02.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06L02 3', mRNA sequence
Length = 772
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 771 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 712
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 711 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 652
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 651 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 592
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 591 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 532
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 531 aggcagggaccgttacagggatagatata 503
>dbj|AK060834.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C08, full
insert sequence
Length = 1481
Score = 200 bits (101), Expect = 6e-049
Identities = 227/269 (84%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 782 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 841
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 842 gatttgtgacgacccggagtatgcaagaagtgttgtcgatgaagttagggctgcaaataa 901
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 902 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 961
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | ||||| |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 962 ggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccg 1021
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||||||| |||| |||||||||||
Sbjct: 1022 aggcagggaccgttacagggatagatata 1050
>gb|CB656753.1|CB656753 OSJNEc11H09.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H09 3', mRNA sequence
Length = 750
Score = 184 bits (93), Expect = 4e-044
Identities = 225/269 (83%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 645 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 586
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 585 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 526
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
||||||||||||||||||||||| | ||||||| |||||||||| ||||||| ||
Sbjct: 525 agaggctgaaaaggaggcctttgaggaggctgaaaagcggaggaaggcttgagaagacga 466
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | || || |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 465 ggaggctcggcgtgctcgagaggaaggagagaaacgaagaagagacagggatcggcaccg 406
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||| ||| |||| |||||||||||
Sbjct: 405 aggcaggggccgttacagggatagatata 377
>gb|CB656658.1|CB656658 OSJNEc11E05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11E05 3', mRNA sequence
Length = 755
Score = 161 bits (81), Expect = 5e-037
Identities = 222/269 (82%)
Strand = Plus / Minus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||||
Sbjct: 689 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttggcaacatttt 630
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| | ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 629 gatttgtgccgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 570
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||| ||||||| ||
Sbjct: 569 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggcttgagaagacga 510
Query: 181 ggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggatagggaccg 240
||| || ||| | || || |||||||| |||| |||||| | || |||||| || ||||
Sbjct: 509 ggaggctcggcgtgctcgagaggaaggagagaaacgaagaagagacagggatcggcaccg 450
Query: 241 cggcagggaccgatacaaggatagatata 269
||||||| ||| |||| |||||||||||
Sbjct: 449 aggcaggggccgttacagggatagatata 421
>ref|XM_475503.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1407
Score = 157 bits (79), Expect = 8e-036
Identities = 157/183 (85%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 960 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 1019
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaaacttttgctgcaaataa 120
|||||| || ||||| || ||||||||| |||||| |||||| | |||||||||||
Sbjct: 1020 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataa 1079
Query: 121 ggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaaga 180
|||||||||||||||||||| || | ||||||| |||||||||||||||||| ||
Sbjct: 1080 agaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacga 1139
Query: 181 gga 183
|||
Sbjct: 1140 gga 1142
>gb|CB681050.1|CB681050 OSJNEf06N02.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06N02 3', mRNA sequence
Length = 736
Score = 123 bits (62), Expect = 1e-025
Identities = 188/230 (81%)
Strand = Plus / Minus
Query: 40 ttcagtttttgacaacattttgatttgcgatgacccagactatgcaagacatgttgtaga 99
||||||||||||||||||||||||||| || ||||| || ||||||||| |||||| ||
Sbjct: 736 ttcagtttttgacaacattttgatttgtgacgacccggagtatgcaagaagtgttgttga 677
Query: 100 tgaaacttttgctgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaagaaa 159
|||| | | ||||||||| ||||| |||||||||||||| || | | |||||
Sbjct: 676 tgaagttagggttgcaaataaagaggcggaaaaggaggccttcgaggaggttgaaaagcg 617
Query: 160 gaggaaggctagagaagaagaggaagcacggagggcacgggaggaaggggagagacgaag 219
|||||||||||||||||| ||||| || || | ||||| |||||||| |||| ||||||
Sbjct: 616 gaggaaggctagagaagacgaggaggcttggcgtgcacgagaggaaggagagaaacgaag 557
Query: 220 gcgggagagggatagggaccgcggcagggaccgatacaaggatagatata 269
| || |||||| || |||| ||||||||||| |||| |||||||||||
Sbjct: 556 aagagacagggatcggcaccgaggcagggaccgttacagggatagatata 507
>gb|CB652977.1|CB652977 OSJNEc03I24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03I24 5', mRNA sequence
Length = 796
Score = 117 bits (59), Expect = 7e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 693 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 752
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaa 103
|||||| || ||||| || ||||||||| |||||| ||||||
Sbjct: 753 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaa 795
>gb|CB656623.1|CB656623 OSJNEc11D06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11D06 5', mRNA sequence
Length = 794
Score = 117 bits (59), Expect = 7e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 669 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 728
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaa 103
|||||| || ||||| || ||||||||| |||||| ||||||
Sbjct: 729 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaa 771
>gb|CB656752.1|CB656752 OSJNEc11H09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H09 5', mRNA sequence
Length = 786
Score = 117 bits (59), Expect = 7e-024
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 669 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 728
Query: 61 gatttgcgatgacccagactatgcaagacatgttgtagatgaa 103
|||||| || ||||| || ||||||||| |||||| ||||||
Sbjct: 729 gatttgtgacgacccggagtatgcaagaagtgttgttgatgaa 771
>gb|CB656617.1|CB656617 OSJNEc11D03.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11D03 5', mRNA sequence
Length = 768
Score = 111 bits (56), Expect = 4e-022
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 669 gcagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacatttt 728
Query: 61 gatttgcgatgacccagactatgcaaga 88
|||||| || ||||| || |||||||||
Sbjct: 729 gatttgtgacgacccggagtatgcaaga 756
>gb|CF325948.1|CF325948 JMT1--04-K21.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-K21, mRNA sequence
Length = 596
Score = 97.6 bits (49), Expect = 7e-018
Identities = 127/153 (83%)
Strand = Plus / Minus
Query: 117 ataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaag 176
|||| |||||||||||||||||||| || | ||||||| |||||||||||||||||
Sbjct: 596 ataaagaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaag 537
Query: 177 aagaggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagggataggg 236
| ||||| || ||| | ||||| |||||||| |||| |||||| | || |||||| ||
Sbjct: 536 acgaggaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggc 477
Query: 237 accgcggcagggaccgatacaaggatagatata 269
|||| ||||||||||| |||| |||||||||||
Sbjct: 476 accgaggcagggaccgttacagggatagatata 444
>gb|AC108522.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A05,
*** SEQUENCING IN PROGRESS ***
Length = 87445
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 86381 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 86322
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 86321 aagaagtgttgttgatgaa 86303
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 85983 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 85924
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 85923 tacagggatagatata 85908
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 86175 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 86116
>gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0013J02, complete sequence
Length = 118026
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 44160 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 44219
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 44220 aagaagtgttgttgatgaa 44238
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 44558 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 44617
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 44618 tacagggatagatata 44633
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 44366 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 44425
>gb|AACV01012526.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012526, whole
genome shotgun sequence
Length = 37647
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 31832 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 31773
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 31772 aagaagtgttgttgatgaa 31754
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 31434 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 31375
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 31374 tacagggatagatata 31359
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 31626 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 31567
>ref|NT_107215.1| Oryza sativa (japonica cultivar-group)
Length = 213124
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 139258 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 139317
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 139318 aagaagtgttgttgatgaa 139336
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 139656 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 139715
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 139716 tacagggatagatata 139731
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 139464 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 139523
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 7304942 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 7305001
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 7305002 aagaagtgttgttgatgaa 7305020
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 7305340 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 7305399
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 7305400 tacagggatagatata 7305415
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 7305148 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 7305207
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 24605255 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 24605314
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 24605315 aagaagtgttgttgatgaa 24605333
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 24605653 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 24605712
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 24605713 tacagggatagatata 24605728
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 24605461 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 24605520
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 6192131 agaaagaggaagggtagagaagaaga 6192106
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgc 84
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 24857275 gcaggtgaaagctggttcagtttttgacaacattttgatttgtgacgacccggagtatgc 24857334
Query: 85 aagacatgttgtagatgaa 103
|||| |||||| ||||||
Sbjct: 24857335 aagaagtgttgttgatgaa 24857353
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 24857673 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 24857732
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 24857733 tacagggatagatata 24857748
Score = 48.1 bits (24), Expect = 0.005
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 123 aggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagg 182
||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||
Sbjct: 24857481 aggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgagg 24857540
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 6303568 agaaagaggaagggtagagaagaaga 6303543
>gb|CB656657.1|CB656657 OSJNEc11E05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11E05 5', mRNA sequence
Length = 735
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gcagtatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacatttt 60
|||||||||||| ||||| || ||||| || |||||||||||| ||||||||||||||||
Sbjct: 669 gcagtatgtgggaattgaggtttggcacgtgaaagctggttcaatttttgacaacatttt 728
Query: 61 gatttg 66
||||||
Sbjct: 729 gatttg 734
>gb|CB669118.1|CB669118 OSJNEe01G01.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01G01 3', mRNA sequence
Length = 354
Score = 71.9 bits (36), Expect = 4e-010
Identities = 129/160 (80%)
Strand = Plus / Minus
Query: 110 gctgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggct 169
||||||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||
Sbjct: 309 gctgcaaataaagaggccgaaaaggaggcctttgaggaggctgaaaagcggaggaaggct 250
Query: 170 agagaagaagaggaagcacggagggcacgggaggaaggggagagacgaaggcgggagagg 229
||||||| ||||| || || | | || |||||||| |||| |||||| | || |||
Sbjct: 249 agagaagccgaggaggcttggcgttctcgagaggaaggagagaaacgaagaagagacagg 190
Query: 230 gatagggaccgcggcagggaccgatacaaggatagatata 269
||| || || | ||||||||||| |||| |||||||||||
Sbjct: 189 gatcggcactgaggcagggaccgttacagggatagatata 150
>gb|CF335788.1|CF335788 JMT--05-J17.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--05-J17, mRNA sequence
Length = 545
Score = 56.0 bits (28), Expect = 2e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 194 gcacgggaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccga 253
||||| |||||||| |||| |||||| | || |||||| || |||| |||||||||||
Sbjct: 526 gcacgagaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgt 467
Query: 254 tacaaggatagatata 269
|||| |||||||||||
Sbjct: 466 tacagggatagatata 451
>gb|AZ135029.1|AZ135029 OSJNBb0114H13f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0114H13f, DNA
sequence
Length = 332
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 200 gaggaaggggagagacgaaggcgggagagggatagggaccgcggcagggaccgatacaag 259
|||||||| |||| |||||| | || |||||| || |||| ||||||||||| |||| |
Sbjct: 332 gaggaaggagagaaacgaagaagagacagggatcggcaccgaggcagggaccgttacagg 273
Query: 260 gatagatata 269
||||||||||
Sbjct: 272 gatagatata 263
>gb|AU174939.1|AU174939 AU174939 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F0072, mRNA sequence
Length = 414
Score = 52.0 bits (26), Expect = 3e-004
Identities = 133/164 (81%), Gaps = 4/164 (2%)
Strand = Plus / Plus
Query: 110 gctgcaaataagga-ggctgaaaaggaggcctttgaaggagctgaaa-gaaagaggaagg 167
||||||||||| || |||||||||||||||||| || | ||||||| | ||||||||
Sbjct: 186 gctgcaaataaagaaggctgaaaaggaggccttcgaggaggctgaaaagcgggaggaagg 245
Query: 168 ctagagaagaagaggaagcacggagggc-acggga-ggaaggggagagacgaaggcggga 225
|||||||||| ||||| || ||| | || || || |||||| |||| ||||| | ||
Sbjct: 246 ctagagaagacgaggaggctcggcgtgccncgagaaggaaggagagaancgaagaagaga 305
Query: 226 gagggatagggaccgcggcagggaccgatacaaggatagatata 269
|||||| || |||| ||||||||||| |||| |||||||||||
Sbjct: 306 cagggatcggcaccgaggcagggaccgttacagggatagatata 349
>gb|CB645144.1|CB645144 OSJNEb06K17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06K17 3', mRNA sequence
Length = 804
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 610 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 551
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 550 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 491
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 490 gaggcttttgaagaagctgagaaggagaggaaagctagaga 450
>gb|CB650401.1|CB650401 OSJNEb14N05.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14N05 3', mRNA sequence
Length = 802
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 617 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 558
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 557 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 498
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 497 gaggcttttgaagaagctgagaaggagaggaaagctagaga 457
>gb|CB655819.1|CB655819 OSJNEc09J08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09J08 3', mRNA sequence
Length = 857
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 672 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 613
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 612 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 553
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 552 gaggcttttgaagaagctgagaaggagaggaaagctagaga 512
>gb|CB660104.1|CB660104 OSJNEd01J08.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01J08 3', mRNA sequence
Length = 861
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 682 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 623
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 622 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 563
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 562 gaggcttttgaagaagctgagaaggagaggaaagctagaga 522
>gb|CB666943.1|CB666943 OSJNEd14A23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14A23 5', mRNA sequence
Length = 793
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 124 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 183
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 184 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 243
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 244 gaggcttttgaagaagctgagaaggagaggaaagctagaga 284
>gb|CB666944.1|CB666944 OSJNEd14A23.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14A23 3', mRNA sequence
Length = 743
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 680 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 621
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 620 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 561
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 560 gaggcttttgaagaagctgagaaggagaggaaagctagaga 520
>dbj|AK099626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055B02, full
insert sequence
Length = 1784
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 1113 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 1172
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 1173 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 1232
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 1233 gaggcttttgaagaagctgagaaggagaggaaagctagaga 1273
>ref|NM_190260.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1278
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
||||| || |||||||| || |||||||| |||||||||||||| | ||||| || ||
Sbjct: 973 attgaggtttggcaggtaaaggctggttcggtttttgacaacatcctcatttgtgacgat 1032
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||||| | | || || ||||| | | |||||| | |||||| |||||
Sbjct: 1033 ccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagggaggccgaaaaa 1092
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagaga 174
||||| ||||||| |||||| | ||||||| ||||||||
Sbjct: 1093 gaggcttttgaagaagctgagaaggagaggaaagctagaga 1133
>gb|AZ130351.1|AZ130351 OSJNBb0103N23f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0103N23f, DNA
sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 227 agggatagggaccgcggcagggaccgatacaaggatagatata 269
|||||| || |||| ||||||||||| |||| |||||||||||
Sbjct: 324 agggatcggcaccgaggcagggaccgttacagggatagatata 282
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12,
complete sequence
Length = 172647
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 133923 agaaagaggaagggtagagaagaaga 133898
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0015G13, complete sequence
Length = 143966
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 5307 agaaagaggaagggtagagaagaaga 5282
>gb|AACV01011121.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011121, whole
genome shotgun sequence
Length = 47503
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 16626 agaaagaggaagggtagagaagaaga 16651
>ref|XM_476124.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1254
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 1204 agaaagaggaagggtagagaagaaga 1179
>ref|NT_107224.1| Oryza sativa (japonica cultivar-group)
Length = 975437
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 836778 agaaagaggaagggtagagaagaaga 836753
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 44.1 bits (22), Expect = 0.085
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 155 agaaagaggaaggctagagaagaaga 180
||||||||||||| ||||||||||||
Sbjct: 6192131 agaaagaggaagggtagagaagaaga 6192106
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0696G06
Length = 142571
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacat 57
|||||| || |||||||| ||||||||||||||
Sbjct: 89933 gcaggtaaaggctggttcggtttttgacaacat 89901
>gb|AACV01002843.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002843, whole
genome shotgun sequence
Length = 7187
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 25 gcaggtcaaagctggttcagtttttgacaacat 57
|||||| || |||||||| ||||||||||||||
Sbjct: 5326 gcaggtaaaggctggttcggtttttgacaacat 5358
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacat 57
|||||| || |||||||| ||||||||||||||
Sbjct: 39005817 gcaggtaaaggctggttcggtttttgacaacat 39005785
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacat 57
|||||| || |||||||| ||||||||||||||
Sbjct: 13453200 gcaggtaaaggctggttcggtttttgacaacat 13453168
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1078G07
Length = 199457
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacat 57
|||||| || |||||||| ||||||||||||||
Sbjct: 198029 gcaggtaaaggctggttcggtttttgacaacat 197997
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 25 gcaggtcaaagctggttcagtttttgacaacat 57
|||||| || |||||||| ||||||||||||||
Sbjct: 13173315 gcaggtaaaggctggttcggtttttgacaacat 13173283
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 944,440
Number of Sequences: 438736
Number of extensions: 944440
Number of successful extensions: 26921
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26323
Number of HSP's gapped (non-prelim): 554
length of query: 595
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 574
effective length of database: 2,791,206,460
effective search space: 1602152508040
effective search space used: 1602152508040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)