BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7987759.3.1
(658 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC O... 159 2e-036
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 159 2e-036
gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) c... 159 2e-036
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 159 2e-036
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 147 9e-033
emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC O... 139 2e-030
gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) c... 139 2e-030
gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature lea... 133 1e-028
gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
gb|C73015.1|C73015 C73015 Rice panicle at flowering stage O... 82 4e-013
gb|C73022.1|C73022 C73022 Rice panicle at flowering stage O... 78 7e-012
dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA... 78 7e-012
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 78 7e-012
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 78 7e-012
gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) c... 78 7e-012
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 78 7e-012
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 78 7e-012
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 78 7e-012
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 78 7e-012
gb|C72759.1|C72759 C72759 Rice panicle at flowering stage O... 74 1e-010
gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
gb|C71958.1|C71958 C71958 Rice panicle at flowering stage O... 72 4e-010
gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
dbj|AP005695.3| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
dbj|AP005822.3| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering s... 62 4e-007
gb|C72577.1|C72577 C72577 Rice panicle at flowering stage O... 50 0.002
gb|C73031.1|C73031 C73031 Rice panicle at flowering stage O... 50 0.002
gb|BP432958.1|BP432958 BP432958 Oryza sativa (japonica cult... 50 0.002
gb|CF326191.1|CF326191 JMT1--05-F19.g1 AtJMT-overexpressing... 50 0.002
gb|CV733964.1|CV733964 FLO--09-B24.b1 Rice flower lambda ph... 50 0.002
dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01020697.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_194623.1| Oryza sativa (japonica cultivar-group) put... 50 0.002
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 50 0.002
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP004994.2| Oryza sativa (japonica cultivar-group) geno... 44 0.094
dbj|AP004862.3| Oryza sativa (japonica cultivar-group) geno... 44 0.094
gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) c... 44 0.094
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 44 0.094
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.094
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 133207
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Plus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 58111 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 58170
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 58171 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 58230
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 58231 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 58282
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 22341 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 22400
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 22401 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 22460
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 22461 tcccgtgcctgcgccgcctcatgcgcgtgctcac 22494
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 58317 cgtctacgcgctcacgccggtgtcccgcctcct 58349
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 22568 tacacgctcacgccggtgtcccgcctcct 22596
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Minus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 1076351 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 1076292
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 1076291 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 1076232
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 1076231 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 1076180
Score = 147 bits (74), Expect = 9e-033
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 141 acaccttcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccg 200
||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 1335045 acaccttcgccgtcgtcaagtccatggctctcaaggccgccatggacctcggcatcgccg 1335104
Query: 201 atgccatccaccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgc 260
| ||||||||||| ||||||||| | || || | | ||||||||||||||| || |||
Sbjct: 1335105 acgccatccaccaccacggcggcgccgccactctgtcccagatagtcaccagggtcgcgc 1335164
Query: 261 tccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcg 320
|||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 1335165 tccacccgtccaaggttccatgcctgcgtcgcctcatgcgcgtgctcactctctccggcg 1335224
Query: 321 tcttcg 326
||||||
Sbjct: 1335225 tcttcg 1335230
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 1112121 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 1112062
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 1112061 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 1112002
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 1112001 tcccgtgcctgcgccgcctcatgcgcgtgctcac 1111968
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 1366249 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 1366308
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 1366309 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 1366368
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 1366369 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 1366422
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 1366478 cgtctacgcgctcacgccggcgtcccgcctcct 1366510
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 1335289 cgtctacgcgctcacgccggtgtcccgcctcct 1335321
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 1111894 tacacgctcacgccggtgtcccgcctcct 1111866
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 1076145 cgtctacgcgctcacgccggtgtcccgcctcct 1076113
>gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024695, whole
genome shotgun sequence
Length = 15878
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Minus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 6674 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 6615
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 6614 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 6555
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 6554 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 6503
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 6468 cgtctacgcgctcacgccggtgtcccgcctcct 6436
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Minus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 240265 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 240206
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 240205 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 240146
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 240145 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 240094
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 276599 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 276540
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 276539 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 276480
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 276479 tcccgtgcctgcgccgcctcatgcgcgtgctcac 276446
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 509301 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 509360
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 509361 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 509420
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 509421 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 509474
Score = 73.8 bits (37), Expect = 1e-010
Identities = 140/173 (80%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 154 cgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacca 213
||||||||||||||| ||||||||| | | |||||||| || |||| |||||||||||
Sbjct: 90525 cgtcaagtccatggccctcaaggcccccatggacctcggaatcgccgacgccatccacca 90584
Query: 214 gcacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaa 273
|| || ||| | || | | | || |||||| ||||| || ||||| ||||||||||
Sbjct: 90585 ccaggggggccccgcaattttttcccaaatagtccccagggtcccgctcaacccgtccaa 90644
Query: 274 gacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| ||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 90645 ggttccatgcctgcgtcgcctcatgcgcgtgctcactctc-ccggcgtcttcg 90696
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 509530 cgtctacgcgctcacgccggcgtcccgcctcct 509562
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 276371 tacacgctcacgccggtgtcccgcctcct 276343
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 240059 cgtctacgcgctcacgccggtgtcccgcctcct 240027
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 90755 cgtctacgcgctcacgccggtgtcccgcctcct 90787
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Minus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 12273324 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 12273265
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 12273264 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 12273205
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 12273204 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 12273153
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 12309658 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 12309599
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 12309598 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 12309539
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 12309538 tcccgtgcctgcgccgcctcatgcgcgtgctcac 12309505
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 12542360 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 12542419
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 12542420 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 12542479
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 12542480 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 12542533
Score = 73.8 bits (37), Expect = 1e-010
Identities = 140/173 (80%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 154 cgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacca 213
||||||||||||||| ||||||||| | | |||||||| || |||| |||||||||||
Sbjct: 12123584 cgtcaagtccatggccctcaaggcccccatggacctcggaatcgccgacgccatccacca 12123643
Query: 214 gcacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaa 273
|| || ||| | || | | | || |||||| ||||| || ||||| ||||||||||
Sbjct: 12123644 ccaggggggccccgcaattttttcccaaatagtccccagggtcccgctcaacccgtccaa 12123703
Query: 274 gacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| ||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 12123704 ggttccatgcctgcgtcgcctcatgcgcgtgctcactctc-ccggcgtcttcg 12123755
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 12542589 cgtctacgcgctcacgccggcgtcccgcctcct 12542621
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 12309430 tacacgctcacgccggtgtcccgcctcct 12309402
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 12273118 cgtctacgcgctcacgccggtgtcccgcctcct 12273086
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 12123814 cgtctacgcgctcacgccggtgtcccgcctcct 12123846
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Minus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 14760689 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 14760630
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 14760629 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 14760570
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 14760569 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 14760518
Score = 147 bits (74), Expect = 9e-033
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 141 acaccttcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccg 200
||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 15019383 acaccttcgccgtcgtcaagtccatggctctcaaggccgccatggacctcggcatcgccg 15019442
Query: 201 atgccatccaccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgc 260
| ||||||||||| ||||||||| | || || | | ||||||||||||||| || |||
Sbjct: 15019443 acgccatccaccaccacggcggcgccgccactctgtcccagatagtcaccagggtcgcgc 15019502
Query: 261 tccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcg 320
|||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 15019503 tccacccgtccaaggttccatgcctgcgtcgcctcatgcgcgtgctcactctctccggcg 15019562
Query: 321 tcttcg 326
||||||
Sbjct: 15019563 tcttcg 15019568
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 14796459 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 14796400
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 14796399 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 14796340
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 14796339 tcccgtgcctgcgccgcctcatgcgcgtgctcac 14796306
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 15050587 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 15050646
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 15050647 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 15050706
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 15050707 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 15050760
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 15050816 cgtctacgcgctcacgccggcgtcccgcctcct 15050848
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 15019627 cgtctacgcgctcacgccggtgtcccgcctcct 15019659
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 14796232 tacacgctcacgccggtgtcccgcctcct 14796204
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 14760483 cgtctacgcgctcacgccggtgtcccgcctcct 14760451
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 159 bits (80), Expect = 2e-036
Identities = 149/172 (86%)
Strand = Plus / Minus
Query: 155 gtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccag 214
|||||||||||||| |||||| |||| | ||||||||||| |||| |||||||||||
Sbjct: 14714972 gtcaagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccac 14714913
Query: 215 cacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaag 274
||||||||| | || ||| | || |||||| |||||||| ||||||||||||| ||||||
Sbjct: 14714912 cacggcggcgccgccaccctgccccagatactcaccagggtcacgctccacccctccaag 14714853
Query: 275 acaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| || |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 14714852 atcccgtgcctgcgccgcctcatgcgcgtgctcaccctcaccggcgtcttcg 14714801
Score = 147 bits (74), Expect = 9e-033
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 141 acaccttcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccg 200
||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 14973666 acaccttcgccgtcgtcaagtccatggctctcaaggccgccatggacctcggcatcgccg 14973725
Query: 201 atgccatccaccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgc 260
| ||||||||||| ||||||||| | || || | | ||||||||||||||| || |||
Sbjct: 14973726 acgccatccaccaccacggcggcgccgccactctgtcccagatagtcaccagggtcgcgc 14973785
Query: 261 tccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcg 320
|||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 14973786 tccacccgtccaaggttccatgcctgcgtcgcctcatgcgcgtgctcactctctccggcg 14973845
Query: 321 tcttcg 326
||||||
Sbjct: 14973846 tcttcg 14973851
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 14750742 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 14750683
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 14750682 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 14750623
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 14750622 tcccgtgcctgcgccgcctcatgcgcgtgctcac 14750589
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 15004870 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 15004929
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 15004930 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 15004989
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 15004990 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 15005043
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 15005099 cgtctacgcgctcacgccggcgtcccgcctcct 15005131
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 14973910 cgtctacgcgctcacgccggtgtcccgcctcct 14973942
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 14750515 tacacgctcacgccggtgtcccgcctcct 14750487
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 14714766 cgtctacgcgctcacgccggtgtcccgcctcct 14714734
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 147 bits (74), Expect = 9e-033
Identities = 158/186 (84%)
Strand = Plus / Minus
Query: 141 acaccttcggctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccg 200
||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 62464 acaccttcgccgtcgtcaagtccatggctctcaaggccgccatggacctcggcatcgccg 62405
Query: 201 atgccatccaccagcacggcggctcggctaccatcccacagatagtcaccaggatcacgc 260
| ||||||||||| ||||||||| | || || | | ||||||||||||||| || |||
Sbjct: 62404 acgccatccaccaccacggcggcgccgccactctgtcccagatagtcaccagggtcgcgc 62345
Query: 261 tccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcg 320
|||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 62344 tccacccgtccaaggttccatgcctgcgtcgcctcatgcgcgtgctcactctctccggcg 62285
Query: 321 tcttcg 326
||||||
Sbjct: 62284 tcttcg 62279
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 31260 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 31201
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 31200 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 31141
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 31140 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 31087
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 31031 cgtctacgcgctcacgccggcgtcccgcctcct 30999
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 62220 cgtctacgcgctcacgccggtgtcccgcctcct 62188
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146519
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 123427 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 123486
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 123487 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 123546
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 123547 tcccgtgcctgcgccgcctcatgcgcgtgctcac 123580
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 123654 tacacgctcacgccggtgtcccgcctcct 123682
>gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024698, whole
genome shotgun sequence
Length = 20844
Score = 139 bits (70), Expect = 2e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 8747 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 8688
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct: 8687 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccacccctccaaga 8628
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 8627 tcccgtgcctgcgccgcctcatgcgcgtgctcac 8594
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 8519 tacacgctcacgccggtgtcccgcctcct 8491
>gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60846_3A, mRNA sequence
Length = 462
Score = 133 bits (67), Expect = 1e-028
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
||||||||||||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 108 tcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccaccacc 167
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaaga 275
|||||||| | || ||||| | ||||||| ||||||| |||||||||| || |||||||
Sbjct: 168 acggcggcgccgccaccatggcccagatagccaccagggtcacgctccanccctccaaga 227
Query: 276 caccatgcctgcggcgcctcatgcgcgtgctcac 309
|| |||||||| ||||||||||||||||||||
Sbjct: 228 tcccgtgcctgcgccgcctcatgcgcgtgctcac 261
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 tacacgctcacgccggcgtcccgtctcct 405
|||||||||||||||| |||||| |||||
Sbjct: 336 tacacgctcacgccggtgtcccgcctcct 364
>gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024715, whole
genome shotgun sequence
Length = 7082
Score = 119 bits (60), Expect = 2e-024
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccaccagc 215
|||| ||| |||| ||||||||||| | ||||||||||| |||| ||||||||||| |
Sbjct: 4213 tcaaatccgtggccctcaaggccgccatggacctcggcatcgccgacgccatccaccacc 4272
Query: 216 acggcggctcggctaccatcccacagatagtcaccaggatcacg---ctccacccgtcca 272
|||||||| | || ||| | | ||||||||||||||| ||||| || ||||||||||
Sbjct: 4273 acggcggcgccgccaccctgtcccagatagtcaccagggtcacgtcgctgcacccgtcca 4332
Query: 273 agacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||| || |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 4333 agatcccgtgcctgcgccgcctgatgcgcgtgctcaccctcaccggcgtcttcg 4386
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| ||||||||||||||||||| |||||
Sbjct: 4442 cgtctacgcgctcacgccggcgtcccgcctcct 4474
>gb|C73015.1|C73015 C73015 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2710_1A, mRNA sequence
Length = 387
Score = 81.8 bits (41), Expect = 4e-013
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 192 ctccacccgtccaagatcccctgcctccgncgcctcatgcgcgngctcaccgtctccggc 251
Query: 320 gtcttcg 326
|||||||
Sbjct: 252 gtcttcg 258
>gb|C73022.1|C73022 C73022 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2752_1A, mRNA sequence
Length = 464
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 208 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 267
Query: 320 gtcttcg 326
|||||||
Sbjct: 268 gtcttcg 274
>dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G03, full
insert sequence
Length = 1357
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 210 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 269
Query: 320 gtcttcg 326
|||||||
Sbjct: 270 gtcttcg 276
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
complete sequence
Length = 143073
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 10701 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 10642
Query: 320 gtcttcg 326
|||||||
Sbjct: 10641 gtcttcg 10635
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 4774 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 4833
Query: 320 gtcttcg 326
|||||||
Sbjct: 4834 gtcttcg 4840
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 10805 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 10749
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
complete sequence
Length = 142068
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 104944 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 104885
Query: 320 gtcttcg 326
|||||||
Sbjct: 104884 gtcttcg 104878
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 99017 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 99076
Query: 320 gtcttcg 326
|||||||
Sbjct: 99077 gtcttcg 99083
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 105048 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 104992
>gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012559, whole
genome shotgun sequence
Length = 17440
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 13874 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 13815
Query: 320 gtcttcg 326
|||||||
Sbjct: 13814 gtcttcg 13808
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 13978 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 13922
Score = 46.1 bits (23), Expect = 0.024
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| || ||||| ||||
Sbjct: 7968 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgccatccgtcttcggc 8027
Query: 320 gtcttcg 326
|||||||
Sbjct: 8028 gtcttcg 8034
>ref|NT_107217.1| Oryza sativa (japonica cultivar-group)
Length = 898765
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 439193 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 439134
Query: 320 gtcttcg 326
|||||||
Sbjct: 439133 gtcttcg 439127
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 433266 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 433325
Query: 320 gtcttcg 326
|||||||
Sbjct: 433326 gtcttcg 433332
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 439297 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 439241
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 7801900 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 7801841
Query: 320 gtcttcg 326
|||||||
Sbjct: 7801840 gtcttcg 7801834
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 7802004 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 7801948
Score = 46.1 bits (23), Expect = 0.024
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| || ||||| ||||
Sbjct: 7795994 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgccatccgtcttcggc 7796053
Query: 320 gtcttcg 326
|||||||
Sbjct: 7796054 gtcttcg 7796060
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 25102213 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 25102154
Query: 320 gtcttcg 326
|||||||
Sbjct: 25102153 gtcttcg 25102147
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 25102317 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 25102261
Score = 46.1 bits (23), Expect = 0.024
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| || ||||| ||||
Sbjct: 25096307 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgccatccgtcttcggc 25096366
Query: 320 gtcttcg 326
|||||||
Sbjct: 25096367 gtcttcg 25096373
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 25370340 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 25370281
Query: 320 gtcttcg 326
|||||||
Sbjct: 25370280 gtcttcg 25370274
Score = 77.8 bits (39), Expect = 7e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 25364413 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccggc 25364472
Query: 320 gtcttcg 326
|||||||
Sbjct: 25364473 gtcttcg 25364479
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 156 tcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacc 212
||||||||||||| |||||| | ||||| ||||||||||| |||| ||| ||||||
Sbjct: 25370444 tcaagtccatggcactcaagtcggcgctagacctcggcatcgccgacgccgtccacc 25370388
>gb|C72759.1|C72759 C72759 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2190_1A, mRNA sequence
Length = 412
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| |||||
Sbjct: 193 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgagctcaccgtctccggc 252
Query: 320 gtctt 324
|||||
Sbjct: 253 gtctt 257
>gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024681, whole
genome shotgun sequence
Length = 21233
Score = 73.8 bits (37), Expect = 1e-010
Identities = 140/173 (80%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 154 cgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatccacca 213
||||||||||||||| ||||||||| | | |||||||| || |||| |||||||||||
Sbjct: 18003 cgtcaagtccatggccctcaaggcccccatggacctcggaatcgccgacgccatccacca 17944
Query: 214 gcacggcggctcggctaccatcccacagatagtcaccaggatcacgctccacccgtccaa 273
|| || ||| | || | | | || |||||| ||||| || ||||| ||||||||||
Sbjct: 17943 ccaggggggccccgcaattttttcccaaatagtccccagggtcccgctcaacccgtccaa 17884
Query: 274 gacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
| ||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 17883 ggttccatgcctgcgtcgcctcatgcgcgtgctcactctc-ccggcgtcttcg 17832
Score = 42.1 bits (21), Expect = 0.37
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 373 cgtctacacgctcacgccggcgtcccgtctcct 405
||||||| |||||||||||| |||||| |||||
Sbjct: 17773 cgtctacgcgctcacgccggtgtcccgcctcct 17741
>gb|C71958.1|C71958 C71958 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0687_1A, mRNA sequence
Length = 343
Score = 71.9 bits (36), Expect = 4e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||| || ||||| || ||||||||||||| ||| |||||| |||||
Sbjct: 201 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctnaccgtctccggc 260
Query: 320 gtcttcg 326
|||||||
Sbjct: 261 gtcttcg 267
>gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013578,
whole genome shotgun sequence
Length = 754
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 733 cggcgcctcatgcgcgtgctcaccgtctccggcatcttcg 694
Score = 44.1 bits (22), Expect = 0.094
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctccttgtcg 410
||||||||||| ||||||||||| ||||| ||||
Sbjct: 652 tacacgctcaccccggcgtcccgcctcctcgtcg 619
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0063H02
Length = 152326
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 41920 cggcgcctcatgcgcgtgctcaccgtctccggcatcttcg 41881
Score = 44.1 bits (22), Expect = 0.094
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 151 ctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatcca 210
|||| |||||||||||||||||||| ||| ||| |||||||| |||| ||||||||
Sbjct: 42056 ctacatcaagtccatggcgctcaagtgcgccgccgagctcggcatccccgccgccatcca 41997
Query: 211 cc 212
||
Sbjct: 41996 cc 41995
Score = 44.1 bits (22), Expect = 0.094
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctccttgtcg 410
||||||||||| ||||||||||| ||||| ||||
Sbjct: 41839 tacacgctcaccccggcgtcccgcctcctcgtcg 41806
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0456E06
Length = 164353
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 135527 cggcgcctcatgcgcgtgctcaccgtctccggcatcttcg 135488
Score = 44.1 bits (22), Expect = 0.094
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 151 ctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatcca 210
|||| |||||||||||||||||||| ||| ||| |||||||| |||| ||||||||
Sbjct: 135663 ctacatcaagtccatggcgctcaagtgcgccgccgagctcggcatccccgccgccatcca 135604
Query: 211 cc 212
||
Sbjct: 135603 cc 135602
Score = 44.1 bits (22), Expect = 0.094
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctccttgtcg 410
||||||||||| ||||||||||| ||||| ||||
Sbjct: 135446 tacacgctcaccccggcgtcccgcctcctcgtcg 135413
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1194774 cggcgcctcatgcgcgtgctcaccgtctccggcatcttcg 1194735
Score = 44.1 bits (22), Expect = 0.094
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctccttgtcg 410
||||||||||| ||||||||||| ||||| ||||
Sbjct: 1194693 tacacgctcaccccggcgtcccgcctcctcgtcg 1194660
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 9802426 cggcgcctcatgcgcgtgctcaccgtctccggcatcttcg 9802387
Score = 44.1 bits (22), Expect = 0.094
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctccttgtcg 410
||||||||||| ||||||||||| ||||| ||||
Sbjct: 9802345 tacacgctcaccccggcgtcccgcctcctcgtcg 9802312
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 tcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||||||| |||||
Sbjct: 7297471 tcatgcgcgtgctcaccgtcgccggc 7297446
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcaccggcgtcttcg 326
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 9845285 cggcgcctcatgcgcgtgctcaccgtctccggcatcttcg 9845246
Score = 44.1 bits (22), Expect = 0.094
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 151 ctacgtcaagtccatggcgctcaaggccgcgctcgacctcggcatacccgatgccatcca 210
|||| |||||||||||||||||||| ||| ||| |||||||| |||| ||||||||
Sbjct: 9845421 ctacatcaagtccatggcgctcaagtgcgccgccgagctcggcatccccgccgccatcca 9845362
Query: 211 cc 212
||
Sbjct: 9845361 cc 9845360
Score = 44.1 bits (22), Expect = 0.094
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 377 tacacgctcacgccggcgtcccgtctccttgtcg 410
||||||||||| ||||||||||| ||||| ||||
Sbjct: 9845204 tacacgctcaccccggcgtcccgcctcctcgtcg 9845171
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 tcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||||||| |||||
Sbjct: 7318141 tcatgcgcgtgctcaccgtcgccggc 7318116
>gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2710, mRNA sequence
Length = 332
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 260 ctccacccgtccaagacaccatgcctgcggcgcctcatgcgcgtgctcaccgtcaccgg 318
|||||||||||||||| || ||||| || ||||||||||||| |||||||||| ||||
Sbjct: 59 ctccacccgtccaagatcccctgcctccgccgcctcatgcgcgcgctcaccgtctccgg 1
>gb|C72577.1|C72577 C72577 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1859_1A, mRNA sequence
Length = 330
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 239 cggcggctcatgcgcgtgctcaccgtcac 267
>gb|C73031.1|C73031 C73031 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2772_1A, mRNA sequence
Length = 462
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 238 cggcggctcatgcgcgtgctcaccgtcac 266
>gb|BP432958.1|BP432958 BP432958 Oryza sativa (japonica cultivar-group) whole plant
seedling Oryza sativa (japonica cultivar-group) cDNA
clone JRC0462, mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 184 cggcggctcatgcgcgtgctcaccgtcac 212
>gb|CF326191.1|CF326191 JMT1--05-F19.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-F19, mRNA sequence
Length = 541
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 232 cggcggctcatgcgcgtgctcaccgtcac 260
>gb|CV733964.1|CV733964 FLO--09-B24.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-B24,
mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 304 cggcggctcatgcgcgtgctcaccgtcac 332
>dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K03, full
insert sequence
Length = 1483
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 265 cggcggctcatgcgcgtgctcaccgtcac 293
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1143230 cggcggctcatgcgcgtgctcaccgtcac 1143202
>gb|AACV01020697.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020697, whole
genome shotgun sequence
Length = 14016
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1815 cggcggctcatgcgcgtgctcaccgtcac 1843
>ref|NM_194623.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase
ZRP4 (OSJNBa0023I19.21), mRNA
Length = 1101
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 229 cggcggctcatgcgcgtgctcaccgtcac 257
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1148369 cggcggctcatgcgcgtgctcaccgtcac 1148341
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080 genomic
scaffold, whole genome shotgun sequence
Length = 3249876
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1273359 cggcggctcatgcgcgtgctcaccgtcac 1273331
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1273359 cggcggctcatgcgcgtgctcaccgtcac 1273331
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1143230 cggcggctcatgcgcgtgctcaccgtcac 1143202
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 287 cggcgcctcatgcgcgtgctcaccgtcac 315
||||| |||||||||||||||||||||||
Sbjct: 1143227 cggcggctcatgcgcgtgctcaccgtcac 1143199
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0052G07
Length = 156207
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 tcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||||||| |||||
Sbjct: 153145 tcatgcgcgtgctcaccgtcgccggc 153120
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0001B11
Length = 166004
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 tcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||||||| |||||
Sbjct: 24726 tcatgcgcgtgctcaccgtcgccggc 24701
>gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013392, whole
genome shotgun sequence
Length = 7686
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 tcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||||||| |||||
Sbjct: 5800 tcatgcgcgtgctcaccgtcgccggc 5775
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 tcatgcgcgtgctcaccgtcaccggc 319
|||||||||||||||||||| |||||
Sbjct: 3009721 tcatgcgcgtgctcaccgtcgccggc 3009696
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 867,224
Number of Sequences: 438736
Number of extensions: 867224
Number of successful extensions: 5935
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5560
Number of HSP's gapped (non-prelim): 358
length of query: 658
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 637
effective length of database: 2,791,206,460
effective search space: 1777998515020
effective search space used: 1777998515020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)