BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB685021.1|CB685021 OSJNEf15B15.f OSJNEf Oryza sativa (j... 238 3e-060
dbj|AP004277.1| Oryza sativa (japonica cultivar-group) chro... 238 3e-060
dbj|AK071855.1| Oryza sativa (japonica cultivar-group) cDNA... 238 3e-060
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 238 3e-060
dbj|AP005395.3| Oryza sativa (japonica cultivar-group) geno... 238 3e-060
gb|AACV01014829.1| Oryza sativa (japonica cultivar-group) c... 238 3e-060
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 238 3e-060
gb|AU076286.1|AU076286 AU076286 Rice shoot Oryza sativa (ja... 216 1e-053
gb|CX728180.1|CX728180 OSJNEf01E20.r OSJNEf Oryza sativa (j... 214 5e-053
gb|D23515.1|D23515 RICC2933A Rice callus Oryza sativa (japo... 143 1e-031
gb|D23517.1|D23517 RICC2935A Rice callus Oryza sativa (japo... 143 1e-031
gb|CF334141.1|CF334141 JMT--03-F03.b1 AtJMT-overexpressing ... 143 1e-031
gb|CF334142.1|CF334142 JMT--03-F03.g1 AtJMT-overexpressing ... 143 1e-031
gb|C27954.1|C27954 C27954 Rice callus cDNA Oryza sativa (ja... 127 8e-027
gb|D48677.1|D48677 RICS15047A Rice green shoot Oryza sativa... 123 1e-025
dbj|AK071202.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 ... 52 4e-004
gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 ... 52 4e-004
gb|AACV01008208.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NM_185083.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clo... 46 0.025
dbj|AK060717.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK101907.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK119955.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK121181.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP005170.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|AACV01006266.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01013381.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01014997.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01021549.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 46 0.025
ref|XM_476359.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.025
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 46 0.025
ref|NT_107191.1| Oryza sativa (japonica cultivar-group) 46 0.025
ref|XM_506131.1| PREDICTED Oryza sativa (japonica cultivar-... 46 0.025
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 46 0.025
gb|AC125495.4| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|C74833.1|C74833 C74833 Rice cDNA from immature leaf incl... 44 0.098
gb|CF312537.1|CF312537 ABF--08-F12.b1 ABF3-overexpressing t... 44 0.098
dbj|AP003893.1| Oryza sativa (japonica cultivar-group) chro... 44 0.098
dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chro... 44 0.098
gb|AC137598.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
dbj|AK072915.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.098
dbj|AK119506.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.098
gb|AC115686.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|AC134517.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|AC134234.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
dbj|AP003912.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
emb|AL662971.2|OSJN00172 Oryza sativa genomic DNA, chromoso... 44 0.098
dbj|AP005795.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
gb|AACV01002017.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01008949.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01013545.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01014454.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01018358.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01018968.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01020807.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01021237.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01025337.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01027432.1| Oryza sativa (japonica cultivar-group) C... 44 0.098
dbj|AP003044.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP005813.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.098
ref|NM_194818.1| Oryza sativa (japonica cultivar-group) put... 44 0.098
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 44 0.098
ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chr... 44 0.098
ref|XM_471290.1| Oryza sativa (japonica cultivar-group), p... 44 0.098
ref|XM_482143.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.098
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 44 0.098
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.098
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 44 0.098
dbj|AP003617.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP006058.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP006061.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP003212.4| Oryza sativa (japonica cultivar-group) geno... 44 0.098
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.098
gb|CH401753.1| Oryza sativa (japonica cultivar-group) scaff... 44 0.098
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
gb|AU312138.1|AU312138 AU312138 Oryza sativa anther cDNA Or... 42 0.39
dbj|AP004187.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP005873.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP005621.2| Oryza sativa (japonica cultivar-group) geno... 42 0.39
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 42 0.39
gb|AY707984.1| Oryza sativa (japonica cultivar-group) clone... 42 0.39
gb|AACV01002104.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01003157.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01006828.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01012856.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01025305.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
dbj|AP002842.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 42 0.39
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 42 0.39
dbj|AP003335.4| Oryza sativa (japonica cultivar-group) geno... 42 0.39
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 42 0.39
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
emb|AL845346.4|CNS08CB8 Oryza sativa chromosome 12, . BAC O... 42 0.39
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
>gb|CB685021.1|CB685021 OSJNEf15B15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15B15 5', mRNA sequence
Length = 730
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 422 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 363
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 362 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 303
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 302 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 243
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 214 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 155
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 154 accgacctgcacttctccat 135
>dbj|AP004277.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0462F09, ***
SEQUENCING IN PROGRESS ***
Length = 161012
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 144459 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 144518
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 144519 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 144578
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 144579 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 144638
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 144667 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 144726
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 144727 accgacctgcacttctccat 144746
>dbj|AK071855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115P14, full
insert sequence
Length = 773
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Minus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 441 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 382
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 381 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 322
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 321 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 262
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 233 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 174
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 173 accgacctgcacttctccat 154
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 5711297 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 5711356
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 5711357 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 5711416
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 5711417 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 5711476
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 5711505 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 5711564
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 5711565 accgacctgcacttctccat 5711584
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 6253059 tcctcctcctcttcttcttcct 6253080
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 352553 tcctcctcctcttcttcttcct 352532
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0623A10
Length = 156517
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 43841 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 43900
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 43901 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 43960
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 43961 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 44020
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 44049 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 44108
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 44109 accgacctgcacttctccat 44128
>gb|AACV01014829.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014829, whole
genome shotgun sequence
Length = 72225
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 15157 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 15216
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 15217 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 15276
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 15277 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 15336
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 15365 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 15424
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 15425 accgacctgcacttctccat 15444
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 9649607 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 9649666
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 9649667 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 9649726
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 9649727 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 9649786
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 9649815 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 9649874
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 9649875 accgacctgcacttctccat 9649894
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 10165896 tcctcctcctcttcttcttcct 10165917
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 4223703 tcctcctcctcttcttcttcct 4223682
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 27348344 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 27348403
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 27348404 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 27348463
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 27348464 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 27348523
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 27348552 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 27348611
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 27348612 accgacctgcacttctccat 27348631
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 7088619 cgccgccacgcggcgccgccgct 7088641
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 27864633 tcctcctcctcttcttcttcct 27864654
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 21922440 tcctcctcctcttcttcttcct 21922419
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 9393372 tcctcctcctcttcttcttcct 9393393
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcc 682
|||||||||||||||||||||
Sbjct: 129425 tcctcctcctcttcttcttcc 129445
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 238 bits (120), Expect = 3e-060
Identities = 165/180 (91%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 28245812 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 28245871
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 28245872 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 28245931
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||
Sbjct: 28245932 ccgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaagctgtacgactt 28245991
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 28246020 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 28246079
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 28246080 accgacctgcacttctccat 28246099
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 7104847 cgccgccacgcggcgccgccgct 7104869
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 28787574 tcctcctcctcttcttcttcct 28787595
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 22887127 tcctcctcctcttcttcttcct 22887106
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 9373791 tcctcctcctcttcttcttcct 9373812
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcc 682
|||||||||||||||||||||
Sbjct: 209069 tcctcctcctcttcttcttcc 209089
>gb|AU076286.1|AU076286 AU076286 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S1089_21A, mRNA sequence
Length = 470
Score = 216 bits (109), Expect = 1e-053
Identities = 251/289 (86%), Gaps = 10/289 (3%)
Strand = Plus / Minus
Query: 374 atcagttcagaggccaccgtagcggacgtc-ggagaacttggacttgagccacttgacgc 432
||||||||||||| || ||||||||| ||| ||||||| ||||||||| ||| |||| ||
Sbjct: 428 atcagttcagaggncaacgtagcggatgtccggagaacctggacttgatccaattgaagc 369
Query: 433 tgctgcggacggtggtcttgatccggcc-ctgcgtg-gcgaacacgttgtacgccgccac 490
|||| |||||||||| ||||| || || |||||| |||||||||||||||||||||||
Sbjct: 368 tgctccggacggtggacttgagcctcccnctgcgttcgcgaacacgttgtacgccgccac 309
Query: 491 gcggc-gccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacg 549
|| | |||||| |||||| |||||||| || ||| |||| |||||||||||||||||||
Sbjct: 308 ccgnccgccgcc-cttcgc-tccgggtcatcgcgggcgcttggcccgttgaagctgtacg 251
Query: 550 acttgccggcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagc 609
|||| ||||| | | | || |||| ||||||||||||||||||||||| |||||||
Sbjct: 250 actt--cggccgccgccg--cctccgctcacgtcctcgtagtcgtacccgccgccgcagc 195
Query: 610 cgtagtacgccgacgagtgctcgtgcggcaccgacctgcacttctccat 658
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 194 cgtagtacgccgccgagtgctcgtgcggcaccgacctgcacttctccat 146
>gb|CX728180.1|CX728180 OSJNEf01E20.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01E20 3', mRNA sequence
Length = 579
Score = 214 bits (108), Expect = 5e-053
Identities = 162/180 (90%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 355 atcagttcagaggccaccgtagcggatgtcggagaacttggacttgatccacttgaagct 414
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcg 493
||| ||||||| || ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 415 gctccggacgggggacttgagcctcccctgcgtcgcgaacacgttgtacgccgccacccg 474
Query: 494 gcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgactt 553
||||||||||||||||||||||| || ||| |||| ||||||||||| |||||| ||||
Sbjct: 475 acgccgccgcttcgcctccgggtcatcgcgggcgcttggcccgttgaaactgtacaactt 534
>gb|D23515.1|D23515 RICC2933A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2933_2A, mRNA sequence
Length = 284
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 226 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 167
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 166 accgacctgcacttctccat 147
Score = 42.1 bits (21), Expect = 0.39
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 523 ggccgctcggcccgttgaagctgta 547
||||||| |||||||||||||||||
Sbjct: 284 ggccgcttggcccgttgaagctgta 260
>gb|D23517.1|D23517 RICC2935A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2935_2A, mRNA sequence
Length = 339
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 226 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 167
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 166 accgacctgcacttctccat 147
Score = 48.1 bits (24), Expect = 0.006
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 474 acgttgtacgccgccacgcggcgccgccgcttcgcctccgggtc 517
|||||||||||||| || || ||||||| |||||||||||||||
Sbjct: 335 acgttgtacgccgcaacccgccgccgcc-cttcgcctccgggtc 293
>gb|CF334141.1|CF334141 JMT--03-F03.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-F03, mRNA sequence
Length = 238
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 173 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 114
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 113 accgacctgcacttctccat 94
Score = 67.9 bits (34), Expect = 7e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 431 gctgctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgcc 488
|||||| |||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 238 gctgctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgcc 181
>gb|CF334142.1|CF334142 JMT--03-F03.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-F03, mRNA sequence
Length = 408
Score = 143 bits (72), Expect = 1e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 217 acgtcctcgtagtcgtacccgccgccgcagccgtagtacgccgccgagtgctcgtgcggc 276
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 277 accgacctgcacttctccat 296
Score = 133 bits (67), Expect = 1e-028
Identities = 103/115 (89%)
Strand = Plus / Plus
Query: 374 atcagttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgct 433
|||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||
Sbjct: 95 atcagttcagaggccaccgtagcggatgttttagaacttggacttgatccacttgaagct 154
Query: 434 gctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgcc 488
||| |||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 155 gctccggacggtggacttgagcctcccctgcgtcgcgaacacgttgtacgccgcc 209
>gb|C27954.1|C27954 C27954 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53538_1A, mRNA sequence
Length = 348
Score = 127 bits (64), Expect = 8e-027
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct: 209 acgtcctcgtagtcgtacccgccgccgcagccgtagtacg-cgccgagtgctcgtgcggc 151
Query: 639 accgacctgcacttctccat 658
||||||||||||||||||||
Sbjct: 150 accgacctgcacttctccat 131
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 468 gcgaacacgttgtacgccgccac 490
|||||||||||||||||||||||
Sbjct: 322 gcgaacacgttgtacgccgccac 300
>gb|D48677.1|D48677 RICS15047A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 365
Score = 123 bits (62), Expect = 1e-025
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctcc-gcagccgtagtacgccgacgagtgctcgtgcgg 637
||||||| ||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 236 acgtcctngtagtcgtacccgccgcccgcagccgtagtacgccgccgagtgctcgtgcgg 177
Query: 638 caccgacctgcacttctccat 658
|||||||||||||||||||||
Sbjct: 176 caccgacctgcacttctccat 156
Score = 113 bits (57), Expect = 1e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 459 ccctgcgtggcgaacacgttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||| ||||| ||||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 359 ccctgcgtcgcgaanacgttgtacgccgccacccgccgccgccccttcgcctccgggtca 300
Query: 519 tcccggccgctcggcccgttgaagctgtacga 550
| |||| |||| ||||||||||||||||||||
Sbjct: 299 ttccgggcgcttggcccgttgaagctgtacga 268
>dbj|AK071202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085A04, full
insert sequence
Length = 525
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 187 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 146
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
sequence
Length = 129302
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 23740 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 23781
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
sequence
Length = 164236
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 77310 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 77269
>gb|AACV01008208.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008208, whole
genome shotgun sequence
Length = 48289
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 3471 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 3512
>ref|NM_185083.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 225
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 140 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 99
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 1276790 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 1276749
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 8318598 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 8318557
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 35584761 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 35584720
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 8639894 cggcctgcccgggcccgccgccg 8639916
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 661 atcctcctcctcttcttcttc 681
|||||||||||||||||||||
Sbjct: 16602400 atcctcctcctcttcttcttc 16602420
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 34709665 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 34709624
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 8501120 cggcctgcccgggcccgccgccg 8501142
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 8077015 tcctcctcctcttcttcttcct 8077036
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 661 atcctcctcctcttcttcttc 681
|||||||||||||||||||||
Sbjct: 15969717 atcctcctcctcttcttcttc 15969737
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 477 ttgtacgccgccacgcggcgccgccgcttcgcctccgggtcg 518
|||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 34619593 ttgtacgccgccaccctccgccggcgcttcgcctccgggtcg 34619552
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 8503285 cggcctgcccgggcccgccgccg 8503307
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 8079180 tcctcctcctcttcttcttcct 8079201
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 661 atcctcctcctcttcttcttc 681
|||||||||||||||||||||
Sbjct: 15975183 atcctcctcctcttcttcttc 15975203
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
Length = 144651
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 67708 tcctcctcctcttcttcttcctt 67686
>dbj|AK060717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E06, full
insert sequence
Length = 1324
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 36 cggcctgcccgggcccgccgccg 14
>dbj|AK101907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071E12, full
insert sequence
Length = 1871
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 52 tcctcctcctcttcttcttcctt 74
>dbj|AK119955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C09, full
insert sequence
Length = 1151
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 106 cgccgccacgcggcgccgccgct 128
>dbj|AK121181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084D19, full
insert sequence
Length = 1919
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 723 cggcctgcccgggcccgccgccg 701
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 141827 tcctcctcctcttcttcttcctt 141805
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0080E19
Length = 152755
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 125634 cgccgccacgcggcgccgccgct 125656
>gb|AACV01006266.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006266, whole
genome shotgun sequence
Length = 16338
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 9045 cggcctgcccgggcccgccgccg 9067
>gb|AACV01013381.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013381, whole
genome shotgun sequence
Length = 46216
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 21947 cgccgccacgcggcgccgccgct 21925
>gb|AACV01014997.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014997, whole
genome shotgun sequence
Length = 26572
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 3682 tcctcctcctcttcttcttcctt 3704
>gb|AACV01021549.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021549, whole
genome shotgun sequence
Length = 53819
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 30236 tcctcctcctcttcttcttcctt 30214
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 783318 tcctcctcctcttcttcttcctt 783296
>ref|XM_476359.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1859
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 52 tcctcctcctcttcttcttcctt 74
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 2796427 cgccgccacgcggcgccgccgct 2796449
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 5065371 tcctcctcctcttcttcttcct 5065392
>ref|NT_107191.1| Oryza sativa (japonica cultivar-group)
Length = 1072208
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 919138 cggcctgcccgggcccgccgccg 919160
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 495033 tcctcctcctcttcttcttcct 495054
>ref|XM_506131.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.31-2
mRNA
Length = 1870
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 53 tcctcctcctcttcttcttcctt 75
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 141825 tcctcctcctcttcttcttcctt 141803
>gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0085M22,
complete sequence
Length = 145104
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 126828 cggcctgcccgggcccgccgccg 126850
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 2165867 tcctcctcctcttcttcttcctt 2165845
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 134856 tcctcctcctcttcttcttcctt 134834
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 482 cgccgccacgcggcgccgccgct 504
|||||||||||||||||||||||
Sbjct: 7088619 cgccgccacgcggcgccgccgct 7088641
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcc 682
|||||||||||||||||||||
Sbjct: 129425 tcctcctcctcttcttcttcc 129445
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 556 cggcctgcccgggcccgccgccg 578
|||||||||||||||||||||||
Sbjct: 8447532 cggcctgcccgggcccgccgccg 8447554
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 13031661 tcctcctcctcttcttcttcctt 13031639
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 8396954 tcctcctcctcttcttcttcct 8396975
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 2711811 tcctcctcctcttcttcttcct 2711832
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,630,210
Number of Sequences: 438736
Number of extensions: 1630210
Number of successful extensions: 20302
Number of sequences better than 0.5: 135
Number of HSP's better than 0.5 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17440
Number of HSP's gapped (non-prelim): 2837
length of query: 687
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 666
effective length of database: 2,791,206,460
effective search space: 1858943502360
effective search space used: 1858943502360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)