BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB666353.1|CB666353 OSJNEd13D14.r OSJNEd Oryza sativa (j... 145 3e-032
dbj|AK065842.1| Oryza sativa (japonica cultivar-group) cDNA... 145 3e-032
ref|XM_473307.1| Oryza sativa (japonica cultivar-group), p... 145 3e-032
gb|CB666352.1|CB666352 OSJNEd13D14.f OSJNEd Oryza sativa (j... 113 1e-022
dbj|AG209716.1| Oryza sativa (japonica cultivar-group) DNA,... 90 1e-015
gb|AACV01010185.1| Oryza sativa (japonica cultivar-group) c... 90 1e-015
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 90 1e-015
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 90 1e-015
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 90 1e-015
emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromoso... 90 1e-015
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 90 1e-015
>gb|CB666353.1|CB666353 OSJNEd13D14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13D14 3', mRNA sequence
Length = 798
Score = 145 bits (73), Expect = 3e-032
Identities = 146/171 (85%), Gaps = 5/171 (2%)
Strand = Plus / Plus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 310 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 369
Query: 374 ctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatcttagatatctc 428
||| ||||| ||| ||| | |||||||||||||||| ||| |||||| ||||||||
Sbjct: 370 ctcaaggttaatctttccatccctgtcactatcaaagcaatggatcatctttgatatctc 429
Query: 429 agaatctgtccagatgaaatcatttattgtagccattctttcnngatccca 479
|||||| |||||||||||||||| | ||| ||||||| ||| |||||||
Sbjct: 430 agaatccgtccagatgaaatcatgcactgtggccattcgttcaagatccca 480
>dbj|AK065842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D04, full
insert sequence
Length = 1216
Score = 145 bits (73), Expect = 3e-032
Identities = 146/171 (85%), Gaps = 5/171 (2%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 895 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 836
Query: 374 ctcgaggtttat-----catcaccgtcactatcaaagcaacggaccatcttagatatctc 428
||| ||||| || |||| | |||||||||||||||| ||| |||||| ||||||||
Sbjct: 835 ctcaaggttaatctttccatccctgtcactatcaaagcaatggatcatctttgatatctc 776
Query: 429 agaatctgtccagatgaaatcatttattgtagccattctttcnngatccca 479
|||||| |||||||||||||||| | ||| ||||||| ||| |||||||
Sbjct: 775 agaatccgtccagatgaaatcatgcactgtggccattcgttcaagatccca 725
>ref|XM_473307.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 867
Score = 145 bits (73), Expect = 3e-032
Identities = 146/171 (85%), Gaps = 5/171 (2%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 867 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 808
Query: 374 ctcgaggtttat-----catcaccgtcactatcaaagcaacggaccatcttagatatctc 428
||| ||||| || |||| | |||||||||||||||| ||| |||||| ||||||||
Sbjct: 807 ctcaaggttaatctttccatccctgtcactatcaaagcaatggatcatctttgatatctc 748
Query: 429 agaatctgtccagatgaaatcatttattgtagccattctttcnngatccca 479
|||||| |||||||||||||||| | ||| ||||||| ||| |||||||
Sbjct: 747 agaatccgtccagatgaaatcatgcactgtggccattcgttcaagatccca 697
>gb|CB666352.1|CB666352 OSJNEd13D14.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13D14 5', mRNA sequence
Length = 857
Score = 113 bits (57), Expect = 1e-022
Identities = 124/147 (84%), Gaps = 5/147 (3%)
Strand = Plus / Minus
Query: 338 caacatgttgcattgagatacaatgctgcggaaatcctcgaggtttatc-----atcacc 392
||||||||||||| | ||||||||| ||||||||||||| ||||| ||| ||| |
Sbjct: 857 caacatgttgcatcgggatacaatggtgcggaaatcctcaaggttaatctttccatccct 798
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 797 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 738
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 737 cactgtggccattcgttcaagatccca 711
>dbj|AG209716.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE8014_0_403_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE8014, genomic survey sequence
Length = 295
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 95 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 154
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 155 ctcaaggtt 163
>gb|AACV01010185.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010185, whole
genome shotgun sequence
Length = 25491
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 2180 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 2121
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 2120 ctcaaggtt 2112
Score = 89.7 bits (45), Expect = 1e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 1487 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 1428
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 1427 cactgtggccattcgttcaagatccca 1401
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 462191 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 462132
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 462131 ctcaaggtt 462123
Score = 89.7 bits (45), Expect = 1e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 461498 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 461439
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 461438 cactgtggccattcgttcaagatccca 461412
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 4518434 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 4518375
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 4518374 ctcaaggtt 4518366
Score = 89.7 bits (45), Expect = 1e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 4517741 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 4517682
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 4517681 cactgtggccattcgttcaagatccca 4517655
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 23662533 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 23662474
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 23662473 ctcaaggtt 23662465
Score = 89.7 bits (45), Expect = 1e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 23661840 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 23661781
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 23661780 cactgtggccattcgttcaagatccca 23661754
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
complete sequence
Length = 113677
Score = 89.7 bits (45), Expect = 1e-015
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 98285 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 98344
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 98345 cactgtggccattcgttcaagatccca 98371
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 97592 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 97651
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 97652 ctcaaggtt 97660
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 314 tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgctgcggaaatc 373
||||||| |||||||| |||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 26685603 tcatcctgacttctcaggctcctgcaacatgttgcatcgggatacaatggtgcggaaatc 26685544
Query: 374 ctcgaggtt 382
||| |||||
Sbjct: 26685543 ctcaaggtt 26685535
Score = 89.7 bits (45), Expect = 1e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 393 gtcactatcaaagcaacggaccatcttagatatctcagaatctgtccagatgaaatcatt 452
|||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 26684910 gtcactatcaaagcaatggatcatctttgatatctcagaatccgtccagatgaaatcatg 26684851
Query: 453 tattgtagccattctttcnngatccca 479
| ||| ||||||| ||| |||||||
Sbjct: 26684850 cactgtggccattcgttcaagatccca 26684824
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 872,461
Number of Sequences: 438736
Number of extensions: 872461
Number of successful extensions: 19216
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19048
Number of HSP's gapped (non-prelim): 168
length of query: 539
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 518
effective length of database: 2,791,206,460
effective search space: 1445844946280
effective search space used: 1445844946280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)