BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA... 357 6e-096
ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA 357 6e-096
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 210 9e-052
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 210 9e-052
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 210 9e-052
gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) c... 210 9e-052
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 210 9e-052
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 210 9e-052
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 210 9e-052
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 210 9e-052
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 54 1e-004
dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chro... 54 1e-004
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 50 0.002
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.007
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 46 0.029
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 46 0.029
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 46 0.029
dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) c... 46 0.029
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AP005567.3| Oryza sativa (japonica cultivar-group) geno... 46 0.029
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 46 0.029
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 44 0.11
dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
gb|AACV01020262.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.11
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AG213125.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG213253.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG214847.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG214966.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG215047.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG024553.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG024559.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG024977.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG025117.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG025364.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG206043.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG207310.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155391.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155466.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155599.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155607.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155642.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB155981.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB156159.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB156243.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB156331.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB156813.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB156889.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB156901.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157065.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157374.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157397.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157497.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157771.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157787.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB158032.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG024547.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG024890.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AG025126.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB157571.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.45
dbj|AB071805.1| Oryza sativa (japonica cultivar-group) mRNA... 42 0.45
dbj|AK061910.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.45
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L0... 42 0.45
gb|AACV01021336.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|NM_196050.1| Oryza sativa (japonica cultivar-group) hyp... 42 0.45
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 42 0.45
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
>dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full
insert sequence
Length = 2371
Score = 357 bits (180), Expect = 6e-096
Identities = 492/596 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 1990 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 1931
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 1930 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 1871
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 1870 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 1811
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 1810 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 1751
Query: 409 gggagagtaccaagtttccagagtgatctatcttcattaagcttctgccacgagtgataa 468
|| ||||| ||||||||||| ||| |||| || | ||||||||| ||||| ||||||||
Sbjct: 1750 ggcagagtgccaagtttccatagtaatctgtcctgattaagcttttgccaggagtgatag 1691
Query: 469 atttcagttatgttctgccgcctccattcagccaggtcaaacacattcattccaaaagcc 528
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1690 atttcagttatgttctgccgcctccattcagccagatcaaagacattcattccaaaagcc 1631
Query: 529 caaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggtat 588
|| |||| ||||| ||||||||| |||| || | |||||||| ||||| |||||
Sbjct: 1630 catccacatgcatgggggtcaaaattcttcacaatgacaggatttgagaaattaaggtaa 1571
Query: 589 cgatcatagcgatggaaactctctccacaagtctcaacagcaccgtttaccttccccttc 648
|||||| | |||||||| ||||||||||||||||| ||| |||| |||| |||||||||
Sbjct: 1570 cgatcaaaacgatggaagctctctccacaagtctctacaacaccaattactttccccttc 1511
Query: 649 atgttgattgaccaaaggccagccagatccttctttactacgatgtcatcatcaagaaag 708
|| | |||||||| |||| | || |||||||||| || | |||||||||||||||
Sbjct: 1510 atatcaattgaccagaggctggttaggtccttctttatcactacatcatcatcaagaaag 1451
Query: 709 accatcttgtcaagctttggatgcatctcaggtaggtaaaagcggagatgattgag 764
|| ||||||| || ||||| | ||||||||||| ||||| || | |||||||||
Sbjct: 1450 acaatcttgtggagatttgggtaaatctcaggtagataaaatcgcaaatgattgag 1395
>ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2371
Score = 357 bits (180), Expect = 6e-096
Identities = 492/596 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 1990 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 1931
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 1930 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 1871
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 1870 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 1811
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 1810 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 1751
Query: 409 gggagagtaccaagtttccagagtgatctatcttcattaagcttctgccacgagtgataa 468
|| ||||| ||||||||||| ||| |||| || | ||||||||| ||||| ||||||||
Sbjct: 1750 ggcagagtgccaagtttccatagtaatctgtcctgattaagcttttgccaggagtgatag 1691
Query: 469 atttcagttatgttctgccgcctccattcagccaggtcaaacacattcattccaaaagcc 528
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1690 atttcagttatgttctgccgcctccattcagccagatcaaagacattcattccaaaagcc 1631
Query: 529 caaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggtat 588
|| |||| ||||| ||||||||| |||| || | |||||||| ||||| |||||
Sbjct: 1630 catccacatgcatgggggtcaaaattcttcacaatgacaggatttgagaaattaaggtaa 1571
Query: 589 cgatcatagcgatggaaactctctccacaagtctcaacagcaccgtttaccttccccttc 648
|||||| | |||||||| ||||||||||||||||| ||| |||| |||| |||||||||
Sbjct: 1570 cgatcaaaacgatggaagctctctccacaagtctctacaacaccaattactttccccttc 1511
Query: 649 atgttgattgaccaaaggccagccagatccttctttactacgatgtcatcatcaagaaag 708
|| | |||||||| |||| | || |||||||||| || | |||||||||||||||
Sbjct: 1510 atatcaattgaccagaggctggttaggtccttctttatcactacatcatcatcaagaaag 1451
Query: 709 accatcttgtcaagctttggatgcatctcaggtaggtaaaagcggagatgattgag 764
|| ||||||| || ||||| | ||||||||||| ||||| || | |||||||||
Sbjct: 1450 acaatcttgtggagatttgggtaaatctcaggtagataaaatcgcaaatgattgag 1395
>dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1111_B02,
*** SEQUENCING IN PROGRESS ***
Length = 96360
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 48506 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 48447
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 48446 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 48387
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 48386 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 48327
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 48326 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 48267
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 48266 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 48207
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 48206 aaatcgcaaatgattgag 48189
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 49639 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 49580
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 49579 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 49520
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 49519 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 49460
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 49459 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 49400
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 49399 ggcagagtgccaagtttccatagtaatct 49371
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1136_A10
Length = 101249
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 97396 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 97337
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 97336 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 97277
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 97276 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 97217
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 97216 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 97157
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 97156 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 97097
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 97096 aaatcgcaaatgattgag 97079
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 98529 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 98470
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 98469 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 98410
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 98409 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 98350
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 98349 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 98290
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 98289 ggcagagtgccaagtttccatagtaatct 98261
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0670E08
Length = 133106
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 38599 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 38540
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 38539 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 38480
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 38479 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 38420
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 38419 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 38360
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 38359 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 38300
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 38299 aaatcgcaaatgattgag 38282
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 39732 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 39673
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 39672 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 39613
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 39612 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 39553
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 39552 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 39493
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 39492 ggcagagtgccaagtttccatagtaatct 39464
>gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018116, whole
genome shotgun sequence
Length = 36630
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 3860 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 3801
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 3800 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 3741
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 3740 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 3681
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 3680 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 3621
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 3620 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 3561
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 3560 aaatcgcaaatgattgag 3543
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 4993 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 4934
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 4933 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 4874
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 4873 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 4814
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 4813 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 4754
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 4753 ggcagagtgccaagtttccatagtaatct 4725
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 14156229 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 14156170
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 14156169 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 14156110
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 14156109 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 14156050
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 14156049 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 14155990
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 14155989 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 14155930
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 14155929 aaatcgcaaatgattgag 14155912
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 14157362 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 14157303
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 14157302 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 14157243
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 14157242 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 14157183
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 14157182 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 14157123
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 14157122 ggcagagtgccaagtttccatagtaatct 14157094
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 5772049 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 5771990
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 5771989 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 5771930
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 5771929 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 5771870
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 5771869 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 5771810
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 5771809 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 5771750
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 5771749 aaatcgcaaatgattgag 5771732
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 5773182 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 5773123
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 5773122 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 5773063
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 5773062 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 5773003
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 5773002 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 5772943
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 5772942 ggcagagtgccaagtttccatagtaatct 5772914
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 13374055 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 13373996
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 13373995 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 13373936
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 13373935 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 13373876
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 13373875 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 13373816
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 13373815 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 13373756
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 13373755 aaatcgcaaatgattgag 13373738
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 13375188 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 13375129
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 13375128 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 13375069
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 13375068 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 13375009
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 13375008 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 13374949
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 13374948 ggcagagtgccaagtttccatagtaatct 13374920
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 210 bits (106), Expect = 9e-052
Identities = 265/318 (83%)
Strand = Plus / Minus
Query: 447 aagcttctgccacgagtgataaatttcagttatgttctgccgcctccattcagccaggtc 506
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 14394316 aagcttttgccaggagtgatagatttcagttatgttctgccgcctccattcagccagatc 14394257
Query: 507 aaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgataat 566
||| |||||||||||||||||||| |||| ||||| ||||||||| |||| || |
Sbjct: 14394256 aaagacattcattccaaaagcccatccacatgcatgggggtcaaaattcttcacaatgac 14394197
Query: 567 gggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaac 626
|||||||| ||||| ||||| |||||| | |||||||| ||||||||||||||||| ||
Sbjct: 14394196 aggatttgagaaattaaggtaacgatcaaaacgatggaagctctctccacaagtctctac 14394137
Query: 627 agcaccgtttaccttccccttcatgttgattgaccaaaggccagccagatccttctttac 686
| |||| |||| ||||||||||| | |||||||| |||| | || ||||||||||
Sbjct: 14394136 aacaccaattactttccccttcatatcaattgaccagaggctggttaggtccttctttat 14394077
Query: 687 tacgatgtcatcatcaagaaagaccatcttgtcaagctttggatgcatctcaggtaggta 746
|| | ||||||||||||||||| ||||||| || ||||| | ||||||||||| ||
Sbjct: 14394076 cactacatcatcatcaagaaagacaatcttgtggagatttgggtaaatctcaggtagata 14394017
Query: 747 aaagcggagatgattgag 764
||| || | |||||||||
Sbjct: 14394016 aaatcgcaaatgattgag 14393999
Score = 153 bits (77), Expect = 2e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 169 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 228
||||| ||||||||||| || ||||| ||||| | ||||||||||| || || |||
Sbjct: 14395449 cttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatgccgac 14395390
Query: 229 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 288
|||||| | || || ||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 14395389 cagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccattgtaa 14395330
Query: 289 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 348
|||||||| || ||| | ||||| ||||||||| | ||||| || |||||||| ||||||
Sbjct: 14395329 tgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaagacca 14395270
Query: 349 agaacatgccatgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 408
|| ||||||||||| || ||||||||| ||||| ||||||||||| | ||||| |
Sbjct: 14395269 aggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaacctgga 14395210
Query: 409 gggagagtaccaagtttccagagtgatct 437
|| ||||| ||||||||||| ||| ||||
Sbjct: 14395209 ggcagagtgccaagtttccatagtaatct 14395181
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 54.0 bits (27), Expect = 1e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 771 caggtacctgcccgggcggccgctcga 797
|||||||||||||||||||||||||||
Sbjct: 204 caggtacctgcccgggcggccgctcga 230
>dbj|AP004004.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1165_E01,
*** SEQUENCING IN PROGRESS ***
Length = 101546
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 54533 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 54483
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 70566 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 70616
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 70566 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 70616
>gb|AACV01014968.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014968, whole
genome shotgun sequence
Length = 17272
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 5778 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 5828
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 11765157 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 11765207
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 29463894 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 29463944
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 501 caggtcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaa 551
||||||||||| ||||| ||||||||||| ||||||||||||| |||||
Sbjct: 30433205 caggtcaaacatgttcatcccaaaagcccacccacaagcatgtggatcaaa 30433255
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI35, mRNA
sequence
Length = 350
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 25 gtacctgcccgggcggccgctcgaa 1
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 279 gtacctgcccgggcggccgctcga 302
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 145 gtacctgcccgggcggccgctcga 168
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 269 gtacctgcccgggcggccgctcga 292
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 246 gtacctgcccgggcggccgctcga 269
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 147 gtacctgcccgggcggccgctcga 170
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 420 gtacctgcccgggcggccgctcga 443
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 315 gtacctgcccgggcggccgctcga 338
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 201 gtacctgcccgggcggccgctcga 224
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 291 tacctgcccgggcggccgctcga 313
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 116 tacctgcccgggcggccgctcga 138
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 361 tacctgcccgggcggccgctcga 383
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
>dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02943T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0384, genomic survey sequence
Length = 280
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 244 tacctgcccgggcggccgctcga 266
>dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06795T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2764, genomic survey sequence
Length = 183
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 141 tacctgcccgggcggccgctcga 163
>dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07737T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1024, genomic survey sequence
Length = 261
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 165 tacctgcccgggcggccgctcga 187
>dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09929T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5009, genomic survey sequence
Length = 356
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 219 tacctgcccgggcggccgctcga 241
>dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10685T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7008, genomic survey sequence
Length = 218
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 183 tacctgcccgggcggccgctcga 205
>dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10611T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6066, genomic survey sequence
Length = 382
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 206 tacctgcccgggcggccgctcga 228
>dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10782T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7016, genomic survey sequence
Length = 270
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 240 tacctgcccgggcggccgctcga 262
>dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11585T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8067, genomic survey sequence
Length = 364
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 333 tacctgcccgggcggccgctcga 355
>dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11887T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9054, genomic survey sequence
Length = 274
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 228 tacctgcccgggcggccgctcga 250
>dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12881T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1501, genomic survey sequence
Length = 407
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 371 tacctgcccgggcggccgctcga 393
>dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA, clone:T13036T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1524, genomic survey sequence
Length = 282
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 197 tacctgcccgggcggccgctcga 219
>dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04522T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0629, genomic survey sequence
Length = 358
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 313 tacctgcccgggcggccgctcga 335
>dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00059T, 3'
flanking sequence of Tos17 insertion in rice strain
H0260, genomic survey sequence
Length = 293
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 267 tacctgcccgggcggccgctcga 289
>dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00116T, 3'
flanking sequence of Tos17 insertion in rice strain
H0408, genomic survey sequence
Length = 389
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 363 tacctgcccgggcggccgctcga 385
>dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00156T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 370
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
>dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA, clone:T03330T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0452, genomic survey sequence
Length = 308
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 242 tacctgcccgggcggccgctcga 264
>dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06483T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2721, genomic survey sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 150 tacctgcccgggcggccgctcga 172
>dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07474T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0062, genomic survey sequence
Length = 294
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 221 tacctgcccgggcggccgctcga 243
>dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07433T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0057, genomic survey sequence
Length = 208
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 171 tacctgcccgggcggccgctcga 193
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,116,113
Number of Sequences: 438736
Number of extensions: 1116113
Number of successful extensions: 5565
Number of sequences better than 0.5: 156
Number of HSP's better than 0.5 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5157
Number of HSP's gapped (non-prelim): 386
length of query: 798
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 777
effective length of database: 2,791,206,460
effective search space: 2168767419420
effective search space used: 2168767419420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)