BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK119455.1| Oryza sativa (japonica cultivar-group) cDNA... 476 e-132
ref|XM_467805.1| Oryza sativa (japonica cultivar-group), mRNA 476 e-132
dbj|AP004089.1| Oryza sativa (japonica cultivar-group) chro... 147 1e-032
dbj|AP004774.3| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|AACV01005424.1| Oryza sativa (japonica cultivar-group) c... 147 1e-032
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 147 1e-032
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|AQ291230.1|AQ291230 nbxb0038F17r CUGI Rice BAC Library O... 145 4e-032
gb|AQ686879.1|AQ686879 nbxb0073C16r CUGI Rice BAC Library O... 133 1e-028
dbj|AG205294.1| Oryza sativa (japonica cultivar-group) DNA,... 133 1e-028
gb|AQ291283.1|AQ291283 nbxb0038B02r CUGI Rice BAC Library O... 125 4e-026
dbj|AG021389.1| Oryza sativa (japonica cultivar-group) DNA,... 117 9e-024
gb|AU069794.1|AU069794 AU069794 Rice panicle at flowering s... 76 3e-011
>dbj|AK119455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E02, full
insert sequence
Length = 2852
Score = 476 bits (240), Expect = e-132
Identities = 405/460 (88%)
Strand = Plus / Minus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 2612 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 2553
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 2552 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 2493
Query: 354 ttcttgtacaacctccttggcttccttttttggaatgccttcccgcattgccacaagctt 413
|||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct: 2492 ctcttgtacaacctctttggcttccttccttggaatgccttccctcattcccacaagctt 2433
Query: 414 ataaaaaacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagt 473
| || |||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 2432 ctcaacaacctcaggcgggcaatctggttgatgttccagaatatttgtataaatgagagt 2373
Query: 474 aaagctatccaaactctcagctgaagctagctccctcatatctgccagaatccgcactct 533
||| ||||||| ||||||||||||||| |||||||| | ||| |||||||||||||||||
Sbjct: 2372 aaaactatccagactctcagctgaagcaagctcccttagatcagccagaatccgcactct 2313
Query: 534 gctttcaacttttgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatc 593
| |||||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||
Sbjct: 2312 ggtttcaacttttgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatc 2253
Query: 594 taacctcatcctctctatcgtttcttcttttatgtagtttttctgagaaaggagatggtc 653
| ||||||||| || || |||||||||||||| | | |||||||| ||||||||| ||
Sbjct: 2252 aagcctcatcctttcgattgtttcttcttttatatggcctttctgagtaaggagatgatc 2193
Query: 654 aacatagaccacaattgtttcctctatgcaagcctccaca 693
||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 2192 aacgtataccacaattgtttgctccaggcaagcctccaca 2153
>ref|XM_467805.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2852
Score = 476 bits (240), Expect = e-132
Identities = 405/460 (88%)
Strand = Plus / Minus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 2612 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 2553
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 2552 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 2493
Query: 354 ttcttgtacaacctccttggcttccttttttggaatgccttcccgcattgccacaagctt 413
|||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct: 2492 ctcttgtacaacctctttggcttccttccttggaatgccttccctcattcccacaagctt 2433
Query: 414 ataaaaaacctcaggcgggcaatcaggttgatgttccagtatattagtgtaaatgagagt 473
| || |||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 2432 ctcaacaacctcaggcgggcaatctggttgatgttccagaatatttgtataaatgagagt 2373
Query: 474 aaagctatccaaactctcagctgaagctagctccctcatatctgccagaatccgcactct 533
||| ||||||| ||||||||||||||| |||||||| | ||| |||||||||||||||||
Sbjct: 2372 aaaactatccagactctcagctgaagcaagctcccttagatcagccagaatccgcactct 2313
Query: 534 gctttcaacttttgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatc 593
| |||||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||
Sbjct: 2312 ggtttcaacttttgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatc 2253
Query: 594 taacctcatcctctctatcgtttcttcttttatgtagtttttctgagaaaggagatggtc 653
| ||||||||| || || |||||||||||||| | | |||||||| ||||||||| ||
Sbjct: 2252 aagcctcatcctttcgattgtttcttcttttatatggcctttctgagtaaggagatgatc 2193
Query: 654 aacatagaccacaattgtttcctctatgcaagcctccaca 693
||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 2192 aacgtataccacaattgtttgctccaggcaagcctccaca 2153
>dbj|AP004089.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1308_A10,
*** SEQUENCING IN PROGRESS ***
Length = 111777
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Minus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 56404 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 56345
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 56344 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 56285
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 56284 ctcttgtacaacct 56271
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Minus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 55933 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 55874
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 55873 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 55817
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 55616 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 55557
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 55556 ttcgattgtttcttcttttat 55536
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 56098 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 56039
Query: 424 tcaggc 429
||||||
Sbjct: 56038 tcaggc 56033
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 55272 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 55215
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0431B06
Length = 154796
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Plus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 10325 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 10384
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 10385 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 10444
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 10445 ctcttgtacaacct 10458
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 10796 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 10855
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 10856 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 10912
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 11113 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 11172
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 11173 ttcgattgtttcttcttttat 11193
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 10631 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 10690
Query: 424 tcaggc 429
||||||
Sbjct: 10691 tcaggc 10696
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 11457 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 11514
>gb|AACV01005424.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005424, whole
genome shotgun sequence
Length = 23750
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Minus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 9958 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 9899
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 9898 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 9839
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 9838 ctcttgtacaacct 9825
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Minus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 9487 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 9428
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 9427 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 9371
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 9170 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 9111
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 9110 ttcgattgtttcttcttttat 9090
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 9652 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 9593
Query: 424 tcaggc 429
||||||
Sbjct: 9592 tcaggc 9587
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 8826 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 8769
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Plus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 6684764 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 6684823
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 6684824 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 6684883
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 6684884 ctcttgtacaacct 6684897
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 6685235 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 6685294
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 6685295 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 6685351
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 6685552 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 6685611
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 6685612 ttcgattgtttcttcttttat 6685632
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 6685070 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 6685129
Query: 424 tcaggc 429
||||||
Sbjct: 6685130 tcaggc 6685135
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 6685896 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 6685953
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Plus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 18082822 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 18082881
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 18082882 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 18082941
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 18082942 ctcttgtacaacct 18082955
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 18083293 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 18083352
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 18083353 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 18083409
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 18083610 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 18083669
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 18083670 ttcgattgtttcttcttttat 18083690
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 18083128 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 18083187
Query: 424 tcaggc 429
||||||
Sbjct: 18083188 tcaggc 18083193
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 18083954 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 18084011
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Plus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 31535886 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 31535945
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 31535946 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 31536005
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 31536006 ctcttgtacaacct 31536019
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 31536357 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 31536416
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 31536417 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 31536473
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 31536674 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 31536733
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 31536734 ttcgattgtttcttcttttat 31536754
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 31536192 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 31536251
Query: 424 tcaggc 429
||||||
Sbjct: 31536252 tcaggc 31536257
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 31537018 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 31537075
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 147 bits (74), Expect = 1e-032
Identities = 119/134 (88%)
Strand = Plus / Plus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 31519765 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 31519824
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 31519825 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 31519884
Query: 354 ttcttgtacaacct 367
|||||||||||||
Sbjct: 31519885 ctcttgtacaacct 31519898
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 31520236 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 31520295
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 31520296 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 31520352
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 546 tgtcacgttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcct 605
|||||| || |||||||| ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 31520553 tgtcacattaatgtgttctctgaaaaaatccataagcacttcttcatcaagcctcatcct 31520612
Query: 606 ctctatcgtttcttcttttat 626
|| || ||||||||||||||
Sbjct: 31520613 ttcgattgtttcttcttttat 31520633
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 31520071 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 31520130
Query: 424 tcaggc 429
||||||
Sbjct: 31520131 tcaggc 31520136
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 636 ctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaagcctccaca 693
||||| ||||||||| ||||| || ||||||||||||| ||| | |||||||||||||
Sbjct: 31520897 ctgagtaaggagatgatcaacgtataccacaattgtttgctccaggcaagcctccaca 31520954
>gb|AQ291230.1|AQ291230 nbxb0038F17r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0038F17r, DNA sequence
Length = 812
Score = 145 bits (73), Expect = 4e-032
Identities = 106/117 (90%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 500 cgggcaatctggttgatgttccagaatatttgtataaatgagagtaaaactatccagact 559
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
|||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||
Sbjct: 560 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaacttt 616
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 257 tgcctttctttgctgtcaagcacttcaatttgccaaacacaaaaccggacttctgagggt 316
|||||||| |||||| | ||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 52 tgcctttccgtgctgttaggcacttcaatttgccaaacactaaaccagacttttgagggt 111
Query: 317 tgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacct 367
| || || ||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 112 tcccgtctacaagagagttctcgtatatttccttgcactcttgtacaacct 162
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 335 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 394
Query: 424 tcaggc 429
||||||
Sbjct: 395 tcaggc 400
>gb|AQ686879.1|AQ686879 nbxb0073C16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0073C16r, DNA sequence
Length = 636
Score = 133 bits (67), Expect = 1e-028
Identities = 112/127 (88%)
Strand = Plus / Minus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 349 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 290
Query: 294 cacaaaaccggacttctgagggttgccatccacaagcgagttctcgtatatctctttgca 353
||||||||| ||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 289 cacaaaaccagacttttgagggttcccgtctacaagagagttctcgtatatttccttgca 230
Query: 354 ttcttgt 360
||||||
Sbjct: 229 ctcttgt 223
Score = 46.1 bits (23), Expect = 0.026
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 364 acctccttggcttccttttttggaatgccttcccgcatt 402
||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 43 acctctttggcttccttccttggaatgccttccctcatt 5
>dbj|AG205294.1| Oryza sativa (japonica cultivar-group) DNA, clone:NC0048_0_503_1A,
3' flanking sequence of Tos17 insertion in rice strain
NC0048, genomic survey sequence
Length = 194
Score = 133 bits (67), Expect = 1e-028
Identities = 102/114 (89%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| |||||||||||||| ||||| || |||||||||| ||| ||||||| |||
Sbjct: 78 cgggcaatctggttgatgttccagaatatttgtataaatgagagnaaaactatccagact 137
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaac 542
|||||||||||| |||||||| | ||| |||||||||||||||||| |||||||
Sbjct: 138 ctcagctgaagcaagctcccttagatcagccagaatccgcactctggtttcaac 191
>gb|AQ291283.1|AQ291283 nbxb0038B02r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0038B02r, DNA sequence
Length = 724
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Plus
Query: 253 catatgcctttctttgctgtcaagcacttcaatttgccaaacacaaaaccggacttctga 312
|||||||||||| |||||| | ||||||||||||||||||||||||||| ||||| |||
Sbjct: 1 catatgcctttccgtgctgttaggcacttcaatttgccaaacacaaaaccagacttttga 60
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacct 367
||||| || || ||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 61 gggttcccgtctacaagagagttctcgtatatttccttgcactcttgtacaacct 115
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 364 acctccttggcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacc 423
||||| ||||||||||| ||||||||||||||| |||| |||||||||| | || ||||
Sbjct: 288 acctctttggcttccttccttggaatgccttccctcattcccacaagcttctcaacaacc 347
Query: 424 tcaggc 429
||||||
Sbjct: 348 tcaggc 353
>dbj|AG021389.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00850T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0048, genomic survey sequence
Length = 201
Score = 117 bits (59), Expect = 9e-024
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
||||||||| ||||||||||||| ||||| || |||||||||||||| ||||||| |||
Sbjct: 78 cgggcaatctggttgatgttccanaatattngtntaaatgagagtaaanctatccanact 137
Query: 489 ctcagctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttt 545
||||||||||| ||||| | | ||| |||| |||||||||| || ||||||||||
Sbjct: 138 ntcagctgaagcangctccnttagatcagccanaatccgcactntggtttcaacttt 194
>gb|AU069794.1|AU069794 AU069794 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3332_1A, mRNA sequence
Length = 321
Score = 75.8 bits (38), Expect = 3e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 234 ttactgcccaagcttcctccatatgcctttctttgctgtcaagcacttcaatttgccaaa 293
|||||| |||||||| ||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 62 ttactgtccaagcttgctccatatgcctttccgtgctgttaggcacttcaatttgccaaa 3
Query: 294 ca 295
||
Sbjct: 2 ca 1
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,168,066
Number of Sequences: 438736
Number of extensions: 1168066
Number of successful extensions: 6848
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6751
Number of HSP's gapped (non-prelim): 97
length of query: 721
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 700
effective length of database: 2,791,206,460
effective search space: 1953844522000
effective search space used: 1953844522000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)