BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU166120.1|AU166120 AU166120 Rice panicle shorter than 3... 262 3e-067
gb|CA997937.1|CA997937 S234A1_B11 Rice cold stress germinat... 252 3e-064
dbj|AK059644.1| Oryza sativa (japonica cultivar-group) cDNA... 252 3e-064
dbj|AK103873.1| Oryza sativa (japonica cultivar-group) cDNA... 252 3e-064
ref|XM_481813.1| Oryza sativa (japonica cultivar-group), mRNA 252 3e-064
ref|XM_507200.1| PREDICTED Oryza sativa (japonica cultivar-... 252 3e-064
dbj|AK069336.1| Oryza sativa (japonica cultivar-group) cDNA... 242 3e-061
gb|D15824.1|D15824 RICC1356A Rice callus Oryza sativa (japo... 228 4e-057
gb|C74778.1|C74778 C74778 Rice cDNA from immature leaf incl... 222 3e-055
gb|CV728430.1|CV728430 COLD--01-G01.b1 Cold treated rice le... 184 6e-044
dbj|AK062928.1| Oryza sativa (japonica cultivar-group) cDNA... 129 3e-027
dbj|AP004459.2| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
dbj|AP004396.3| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
gb|AACV01018196.1| Oryza sativa (japonica cultivar-group) c... 129 3e-027
ref|XM_481814.1| Oryza sativa (japonica cultivar-group), mRNA 129 3e-027
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 129 3e-027
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 129 3e-027
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 129 3e-027
dbj|AP004011.3| Oryza sativa (japonica cultivar-group) geno... 115 4e-023
gb|AACV01019464.1| Oryza sativa (japonica cultivar-group) c... 115 4e-023
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 115 4e-023
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 115 4e-023
dbj|AK106400.1| Oryza sativa (japonica cultivar-group) cDNA... 82 6e-013
ref|XM_473755.1| Oryza sativa (japonica cultivar-group), p... 82 6e-013
dbj|AP005772.3| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|AACV01003448.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
ref|XM_464312.1| Oryza sativa (japonica cultivar-group), mRNA 80 2e-012
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 80 2e-012
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
dbj|AK059448.1| Oryza sativa (japonica cultivar-group) cDNA... 78 9e-012
gb|AACV01005235.1| Oryza sativa (japonica cultivar-group) c... 78 9e-012
ref|XM_467318.1| Oryza sativa (japonica cultivar-group), mRNA 78 9e-012
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 78 9e-012
dbj|AP003994.3| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
dbj|AP004778.3| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 78 9e-012
gb|AACV01010425.1| Oryza sativa (japonica cultivar-group) c... 72 6e-010
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 72 6e-010
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 72 6e-010
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 72 6e-010
emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromoso... 72 6e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 72 6e-010
dbj|AP004736.2| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AACV01018197.1| Oryza sativa (japonica cultivar-group) c... 68 9e-009
gb|C91683.1|C91683 C91683 Rice panicle shorter than 3cm Ory... 60 2e-006
gb|D46235.1|D46235 RICS10774A Rice green shoot Oryza sativa... 52 5e-004
>gb|AU166120.1|AU166120 AU166120 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31716, mRNA sequence
Length = 404
Score = 262 bits (132), Expect = 3e-067
Identities = 220/248 (88%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 157 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 216
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacaccaaaa 419
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 217 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgagaaagcaacacctaaa 276
Query: 420 a-tatcttaaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatctt 478
| |||||| ||||||||||| || ||||| || |||||||| ||||||||||| ||||||
Sbjct: 277 actatcttgaggacaatgggtgtgaaggggctcactcttttccacttgaagagtcatctt 336
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgca 538
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 337 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatgca 396
Query: 539 tcctatct 546
||||||||
Sbjct: 397 tcctatct 404
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 82 gaggaggagatgttcccgcctgggctgatccaccaccg 119
>gb|CA997937.1|CA997937 S234A1_B11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 746
Score = 252 bits (127), Expect = 3e-064
Identities = 311/371 (83%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 201 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 260
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaaca-ccaaaaatatct 425
| |||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||
Sbjct: 261 gcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatca 320
Query: 426 taaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
| ||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 321 tgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaat 380
Query: 486 acagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatc 545
|||||||||| || |||||||| || ||| |||||||||| ||||| || || |||
Sbjct: 381 acagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttata 440
Query: 546 ttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaag 605
|| | | ||||||||||||| | | || |||| |||||| | | ||| ||||||
Sbjct: 441 ttttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaag 500
Query: 606 aaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatg 665
| || |||||| | ||||||||||| ||||| ||||||||||| ||| ||| | ||||||
Sbjct: 501 agagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatg 560
Query: 666 aacaagtggag 676
|||||||||||
Sbjct: 561 aacaagtggag 571
>dbj|AK059644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B12, full
insert sequence
Length = 1175
Score = 252 bits (127), Expect = 3e-064
Identities = 311/371 (83%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 153 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 212
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaaca-ccaaaaatatct 425
| |||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||
Sbjct: 213 gcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatca 272
Query: 426 taaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
| ||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 273 tgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaat 332
Query: 486 acagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatc 545
|||||||||| || |||||||| || ||| |||||||||| ||||| || || |||
Sbjct: 333 acagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttata 392
Query: 546 ttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaag 605
|| | | ||||||||||||| | | || |||| |||||| | | ||| ||||||
Sbjct: 393 ttttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaag 452
Query: 606 aaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatg 665
| || |||||| | ||||||||||| ||||| ||||||||||| ||| ||| | ||||||
Sbjct: 453 agagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatg 512
Query: 666 aacaagtggag 676
|||||||||||
Sbjct: 513 aacaagtggag 523
>dbj|AK103873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149L11, full
insert sequence
Length = 1201
Score = 252 bits (127), Expect = 3e-064
Identities = 311/371 (83%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 196 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 255
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaaca-ccaaaaatatct 425
| |||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||
Sbjct: 256 gcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatca 315
Query: 426 taaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
| ||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 316 tgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaat 375
Query: 486 acagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatc 545
|||||||||| || |||||||| || ||| |||||||||| ||||| || || |||
Sbjct: 376 acagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttata 435
Query: 546 ttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaag 605
|| | | ||||||||||||| | | || |||| |||||| | | ||| ||||||
Sbjct: 436 ttttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaag 495
Query: 606 aaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatg 665
| || |||||| | ||||||||||| ||||| ||||||||||| ||| ||| | ||||||
Sbjct: 496 agagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatg 555
Query: 666 aacaagtggag 676
|||||||||||
Sbjct: 556 aacaagtggag 566
>ref|XM_481813.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1175
Score = 252 bits (127), Expect = 3e-064
Identities = 311/371 (83%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 153 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 212
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaaca-ccaaaaatatct 425
| |||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||
Sbjct: 213 gcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatca 272
Query: 426 taaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
| ||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 273 tgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaat 332
Query: 486 acagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatc 545
|||||||||| || |||||||| || ||| |||||||||| ||||| || || |||
Sbjct: 333 acagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttata 392
Query: 546 ttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaag 605
|| | | ||||||||||||| | | || |||| |||||| | | ||| ||||||
Sbjct: 393 ttttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaag 452
Query: 606 aaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatg 665
| || |||||| | ||||||||||| ||||| ||||||||||| ||| ||| | ||||||
Sbjct: 453 agagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatg 512
Query: 666 aacaagtggag 676
|||||||||||
Sbjct: 513 aacaagtggag 523
>ref|XM_507200.1| PREDICTED Oryza sativa (japonica cultivar-group), P0410E11.132-1
mRNA
Length = 1202
Score = 252 bits (127), Expect = 3e-064
Identities = 311/371 (83%), Gaps = 1/371 (0%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 197 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 256
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaaca-ccaaaaatatct 425
| |||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||
Sbjct: 257 gcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatca 316
Query: 426 taaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
| ||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 317 tgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaat 376
Query: 486 acagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatc 545
|||||||||| || |||||||| || ||| |||||||||| ||||| || || |||
Sbjct: 377 acagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttata 436
Query: 546 ttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaag 605
|| | | ||||||||||||| | | || |||| |||||| | | ||| ||||||
Sbjct: 437 ttttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaag 496
Query: 606 aaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatg 665
| || |||||| | ||||||||||| ||||| ||||||||||| ||| ||| | ||||||
Sbjct: 497 agagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatg 556
Query: 666 aacaagtggag 676
|||||||||||
Sbjct: 557 aacaagtggag 567
>dbj|AK069336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010K22, full
insert sequence
Length = 2703
Score = 242 bits (122), Expect = 3e-061
Identities = 210/238 (88%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 387 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 446
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaa 418
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 447 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgagaaagcaacacctaaa 506
Query: 419 aatatcttaaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatctt 478
| |||||| ||||||||||| || ||||| || |||||||| ||||||||||| ||||||
Sbjct: 507 actatcttgaggacaatgggtgtgaaggggctcactcttttccacttgaagagtcatctt 566
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 567 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 624
Score = 105 bits (53), Expect = 4e-020
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagttcctgcccag 595
|||||||||||||||||||| ||| |||||||||| ||||| | ||||||| || | ||
Sbjct: 2023 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcatagagtttctactcaa 2082
Query: 596 gatatgaaagaaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaaga 655
||| | ||||||| ||||| || || |||||| || |||| ||||||||| | ||| ||
Sbjct: 2083 gatgttaaagaaaatcaagaggtcaaggaagcattgcgagctcagatggaaatgcaacga 2142
Query: 656 agactgcatgaacaagtggag 676
|||||||||||||||||||||
Sbjct: 2143 agactgcatgaacaagtggag 2163
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 312 gaggaggagatgttcccgcctgggctgatccaccaccg 349
>gb|D15824.1|D15824 RICC1356A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1356A, mRNA sequence
Length = 570
Score = 228 bits (115), Expect = 4e-057
Identities = 181/202 (89%), Gaps = 1/202 (0%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 130 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 189
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaaca-ccaaaaatatct 425
| |||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||
Sbjct: 190 gcttcgtcgacgccgtngcccagctcggcgggcccgacaaagcaacacccaaaactatca 249
Query: 426 taaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
| ||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||
Sbjct: 250 tgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaat 309
Query: 486 acagattagggaaacaatctgg 507
|||||||||| || ||||||||
Sbjct: 310 acagattaggaaagcaatctgg 331
>gb|C74778.1|C74778 C74778 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E51028_1A,
mRNA sequence
Length = 390
Score = 222 bits (112), Expect = 3e-055
Identities = 218/251 (86%), Gaps = 4/251 (1%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 143 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 202
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaa 418
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct: 203 cacgagcgcttcgtcgacgccgtcgcccagctcggcggcnccgagaaagcaacacctaaa 262
Query: 419 aatatcttaaggacaatgggcgtcaagggtcttactctttttcacttgaagagccatctt 478
| |||||| ||||||||||| || ||||| || |||||||| ||||||||||| ||||||
Sbjct: 263 actatcttgaggacaatgggtgtgaaggggctcactcttttccacttgaagagtcatctt 322
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatgca 538
|||||||| ||| | ||| |||||||||| ||| | ||| ||||||||| ||||||||
Sbjct: 323 cagaaatatagactnggg-aacaatctggaaag--agcatcngagcaatctnaagatgca 379
Query: 539 tcctatcttct 549
|||||||||||
Sbjct: 380 tcctatcttct 390
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 69 gaggaggagatgttcccgcctgggctgatccaccaccg 106
>gb|CV728430.1|CV728430 COLD--01-G01.b1 Cold treated rice leaf lambda phage cDNA library
(COLD) Oryza sativa (japonica cultivar-group) cDNA clone
COLD--01-G01, mRNA sequence
Length = 513
Score = 184 bits (93), Expect = 6e-044
Identities = 142/157 (90%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 327 cccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcc 386
||||||||| | || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 357 cccaagccccgcctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcc 416
Query: 387 cagctcggcggacccgagaaagcaacacc-aaaaatatcttaaggacaatgggcgtcaag 445
||||||||||| ||||||||||||||||| |||| |||||| ||||||||||| || |||
Sbjct: 417 cagctcggcggccccgagaaagcaacacctaaaactatcttgaggacaatgggtgtgaag 476
Query: 446 ggtcttactctttttcacttgaagagccatcttcaga 482
|| || |||||||| ||||||||||| ||||||||||
Sbjct: 477 gggctcactcttttccacttgaagagtcatcttcaga 513
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 255 gaggaggagatgttcccgcctgggctgatccaccaccg 292
>dbj|AK062928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A04, full
insert sequence
Length = 397
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 98 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 157
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 158 gcttcgtcgacgccgtcgcccagctcggcgggcccga 194
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0410E11
Length = 150200
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 122647 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 122706
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 122707 gcttcgtcgacgccgtcgcccagctcggcgggcccga 122743
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 129547 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 129606
Query: 671 gtggag 676
||||||
Sbjct: 129607 gtggag 129612
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 127862 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 127921
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 127922 tgaaaagccaccttcag 127938
>dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0404D10
Length = 155069
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 2948 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 3007
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 3008 gcttcgtcgacgccgtcgcccagctcggcgggcccga 3044
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 9848 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 9907
Query: 671 gtggag 676
||||||
Sbjct: 9908 gtggag 9913
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 8163 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 8222
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 8223 tgaaaagccaccttcag 8239
>gb|AACV01018196.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018196, whole
genome shotgun sequence
Length = 28708
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 3933 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 3874
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 3873 gcttcgtcgacgccgtcgcccagctcggcgggcccga 3837
>ref|XM_481814.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 397
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 98 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 157
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 158 gcttcgtcgacgccgtcgcccagctcggcgggcccga 194
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 15450405 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 15450464
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 15450465 gcttcgtcgacgccgtcgcccagctcggcgggcccga 15450501
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 15457305 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 15457364
Query: 671 gtggag 676
||||||
Sbjct: 15457365 gtggag 15457370
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 15455620 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 15455679
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 15455680 tgaaaagccaccttcag 15455696
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 6925768 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 6925827
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 6925828 gcttcgtcgacgccgtcgcccagctcggcgggcccga 6925864
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 6932994 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 6933053
Query: 671 gtggag 676
||||||
Sbjct: 6933054 gtggag 6933059
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 6931309 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 6931368
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 6931369 tgaaaagccaccttcag 6931385
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 14527774 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 14527833
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 14527834 gcttcgtcgacgccgtcgcccagctcggcgggcccga 14527870
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 14535000 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 14535059
Query: 671 gtggag 676
||||||
Sbjct: 14535060 gtggag 14535065
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 14533315 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 14533374
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 14533375 tgaaaagccaccttcag 14533391
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 129 bits (65), Expect = 3e-027
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagc 366
|||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 15688492 gcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgacc 15688551
Query: 367 gtttcgtcgacgccgtggcccagctcggcggacccga 403
| |||||||||||||| |||||||||||||| |||||
Sbjct: 15688552 gcttcgtcgacgccgtcgcccagctcggcgggcccga 15688588
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 15695392 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 15695451
Query: 671 gtggag 676
||||||
Sbjct: 15695452 gtggag 15695457
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 15693707 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 15693766
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 15693767 tgaaaagccaccttcag 15693783
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1381_H04
Length = 130961
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 114377 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 114436
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 114437 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgaga 114482
Score = 73.8 bits (37), Expect = 1e-010
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||||| ||||||||||| || ||||| || |||||||| ||||
Sbjct: 117316 aagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccact 117375
Query: 465 tgaagagccatcttcag 481
||||||| |||||||||
Sbjct: 117376 tgaagagtcatcttcag 117392
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 118920 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 118970
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 119134 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 119187
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 117463 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 117520
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 114302 gaggaggagatgttcccgcctgggctgatccaccaccg 114339
>gb|AACV01019464.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019464, whole
genome shotgun sequence
Length = 48805
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 13254 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 13195
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 13194 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgaga 13149
Score = 73.8 bits (37), Expect = 1e-010
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||||| ||||||||||| || ||||| || |||||||| ||||
Sbjct: 10315 aagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccact 10256
Query: 465 tgaagagccatcttcag 481
||||||| |||||||||
Sbjct: 10255 tgaagagtcatcttcag 10239
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 8711 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 8661
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 13329 gaggaggagatgttcccgcctgggctgatccaccaccg 13292
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 10168 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 10111
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 8497 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 8444
>ref|NT_107079.1| Oryza sativa (japonica cultivar-group)
Length = 5472939
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 4458358 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 4458417
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 4458418 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgaga 4458463
Score = 73.8 bits (37), Expect = 1e-010
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||||| ||||||||||| || ||||| || |||||||| ||||
Sbjct: 4461297 aagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccact 4461356
Query: 465 tgaagagccatcttcag 481
||||||| |||||||||
Sbjct: 4461357 tgaagagtcatcttcag 4461373
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 4462901 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 4462951
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 4463115 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 4463168
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 4461444 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 4461501
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 4458283 gaggaggagatgttcccgcctgggctgatccaccaccg 4458320
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078
genomic scaffold, whole genome shotgun sequence
Length = 4067473
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 917981 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 918040
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 918041 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgaga 918086
Score = 73.8 bits (37), Expect = 1e-010
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||||| ||||||||||| || ||||| || |||||||| ||||
Sbjct: 920920 aagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccact 920979
Query: 465 tgaagagccatcttcag 481
||||||| |||||||||
Sbjct: 920980 tgaagagtcatcttcag 920996
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 922524 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 922574
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 922738 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 922791
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 921067 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 921124
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 917906 gaggaggagatgttcccgcctgggctgatccaccaccg 917943
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 6324219 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 6324278
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 6324279 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgaga 6324324
Score = 73.8 bits (37), Expect = 1e-010
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||||| ||||||||||| || ||||| || |||||||| ||||
Sbjct: 6327158 aagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccact 6327217
Query: 465 tgaagagccatcttcag 481
||||||| |||||||||
Sbjct: 6327218 tgaagagtcatcttcag 6327234
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 6328762 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 6328812
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 6328976 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 6329029
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 6327305 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 6327362
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 6324144 gaggaggagatgttcccgcctgggctgatccaccaccg 6324181
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 115 bits (58), Expect = 4e-023
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 300 gggccgagccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctc 359
||||| ||||| || ||||| || || ||||||||| | || ||||||||||||||||||
Sbjct: 7262272 gggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctc 7262331
Query: 360 cacgagcgtttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 7262332 cacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgaga 7262377
Score = 73.8 bits (37), Expect = 1e-010
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||||| ||||||||||| || ||||| || |||||||| ||||
Sbjct: 7265211 aagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccact 7265270
Query: 465 tgaagagccatcttcag 481
||||||| |||||||||
Sbjct: 7265271 tgaagagtcatcttcag 7265287
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 7266815 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 7266865
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 7267029 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 7267082
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 479 cagaaatacagattagggaaacaatctggtaaggagggatcagagcaatctaaagatg 536
|||||||| ||| | |||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 7265358 cagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatg 7265415
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 7262197 gaggaggagatgttcccgcctgggctgatccaccaccg 7262234
>dbj|AK106400.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G05, full
insert sequence
Length = 1656
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 274 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 333
Query: 383 ggcccagctcggcggacccgagaaagcaacacc 415
|| ||||||||| || || |||||||||||
Sbjct: 334 caccaggctcggcggcccggacaaagcaacacc 366
>ref|XM_473755.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 750
Score = 81.8 bits (41), Expect = 6e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 54 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 113
Query: 383 ggcccagctcggcggacccgagaaagcaacacc 415
|| ||||||||| || || |||||||||||
Sbjct: 114 caccaggctcggcggcccggacaaagcaacacc 146
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0073A21
Length = 170051
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 106855 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 106796
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 106795 acccagctcggcggccccga 106776
>gb|AACV01003448.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003448, whole
genome shotgun sequence
Length = 3815
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 3182 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 3241
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 3242 acccagctcggcggccccga 3261
>ref|XM_464312.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1068
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 40 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 99
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 100 acccagctcggcggccccga 119
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 1026037 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 1025978
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 1025977 acccagctcggcggccccga 1025958
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 4125073 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 4125014
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 4125013 acccagctcggcggccccga 4124994
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 4125073 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 4125014
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 4125013 acccagctcggcggccccga 4124994
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 28790943 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 28791002
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 28791003 caccaagctcggcgg 28791017
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||||
Sbjct: 4060189 gaccccaagccgcggctccggtggacggtggagctccacgagcgcttcgtcgacgccgtc 4060130
Query: 384 gcccagctcggcggacccga 403
||||||||||||| |||||
Sbjct: 4060129 acccagctcggcggccccga 4060110
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 28827927 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 28827986
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 28827987 caccaagctcggcgg 28828001
>dbj|AK059448.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A10, full
insert sequence
Length = 1504
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 515 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 574
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 575 caccaagctcggcgg 589
>gb|AACV01005235.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005235, whole
genome shotgun sequence
Length = 4319
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 3898 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 3839
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 3838 caccaagctcggcgg 3824
>ref|XM_467318.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1504
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 515 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 574
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 575 caccaagctcggcgg 589
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 3992926 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 3992985
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 3992986 caccaagctcggcgg 3993000
>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1111_E07
Length = 123613
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 20619 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 20678
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 20679 caccaagctcggcgg 20693
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0459B01
Length = 163087
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 144500 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 144559
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 144560 caccaagctcggcgg 144574
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 77.8 bits (39), Expect = 9e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 15337879 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 15337938
Query: 383 ggcccagctcggcgg 397
|| ||||||||||
Sbjct: 15337939 caccaagctcggcgg 15337953
>gb|AACV01010425.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010425, whole
genome shotgun sequence
Length = 81545
Score = 71.9 bits (36), Expect = 6e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 74568 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 74627
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 71.9 bits (36), Expect = 6e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 213121 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 213180
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 71.9 bits (36), Expect = 6e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 8037721 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 8037780
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 71.9 bits (36), Expect = 6e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 27181820 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 27181879
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
complete sequence
Length = 160989
Score = 71.9 bits (36), Expect = 6e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 66506 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 66565
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 71.9 bits (36), Expect = 6e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||| ||||| |||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 30316610 ggacccgaagccgcggctgcggtggacgccggacctccacgagcgcttcgtcgacgccgt 30316669
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
BAC clone:OSJNBa0062A09
Length = 173541
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 536 gcatcctatcttctagatgctcaaagtggaatgagcgtgtcccctagagtt 586
|||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct: 778 gcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtt 828
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 623 gaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| || |||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 992 gaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggag 1045
>gb|AACV01018197.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018197, whole
genome shotgun sequence
Length = 18992
Score = 67.9 bits (34), Expect = 9e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 611 caagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaa 670
|||||| | ||||||||||| ||||| ||||||||||| ||| ||| | |||||||||||
Sbjct: 3244 caagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaa 3303
Query: 671 gtggag 676
||||||
Sbjct: 3304 gtggag 3309
Score = 65.9 bits (33), Expect = 4e-008
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 406 aagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtcttactctttttcact 464
|||||||||| |||| |||| | ||||||||||| || |||||||| || ||||||||||
Sbjct: 1559 aagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcact 1618
Query: 465 tgaagagccatcttcag 481
|||| ||||| ||||||
Sbjct: 1619 tgaaaagccaccttcag 1635
>gb|C91683.1|C91683 C91683 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31243_1A, mRNA sequence
Length = 393
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 213 gaggaagagatgttcccgcctggcctgatccaccaccg 250
||||| ||||||||||||||||| ||||||||||||||
Sbjct: 242 gaggaggagatgttcccgcctgggctgatccaccaccg 279
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,480,382
Number of Sequences: 438736
Number of extensions: 1480382
Number of successful extensions: 10553
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10074
Number of HSP's gapped (non-prelim): 453
length of query: 915
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 894
effective length of database: 2,791,206,460
effective search space: 2495338575240
effective search space used: 2495338575240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)