BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB636249.1|CB636249 OSJNEa01H23.r OSJNEa Oryza sativa (j... 180 4e-043
gb|CB661027.1|CB661027 OSJNEd03F22.r OSJNEd Oryza sativa (j... 180 4e-043
dbj|AK100977.1| Oryza sativa (japonica cultivar-group) cDNA... 180 4e-043
dbj|AP005002.3| Oryza sativa (japonica cultivar-group) geno... 180 4e-043
gb|AACV01005463.1| Oryza sativa (japonica cultivar-group) c... 180 4e-043
ref|XM_467941.1| Oryza sativa (japonica cultivar-group), mRNA 180 4e-043
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 180 4e-043
dbj|AP004817.3| Oryza sativa (japonica cultivar-group) geno... 180 4e-043
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 180 4e-043
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 180 4e-043
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 180 4e-043
gb|AU092062.1|AU092062 AU092062 Rice callus Oryza sativa (j... 157 6e-036
gb|CB651638.1|CB651638 OSJNEb16K20.r OSJNEb Oryza sativa (j... 54 7e-005
dbj|AK060517.1| Oryza sativa (japonica cultivar-group) cDNA... 54 7e-005
dbj|AK071664.1| Oryza sativa (japonica cultivar-group) cDNA... 54 7e-005
dbj|AP004770.3| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
dbj|AP004771.3| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
gb|AACV01003870.1| Oryza sativa (japonica cultivar-group) c... 54 7e-005
ref|XM_464933.1| Oryza sativa (japonica cultivar-group), mRNA 54 7e-005
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 54 7e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 54 7e-005
dbj|AK071124.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AP004687.2| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP003458.4| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01013292.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AK102499.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.26
gb|AACV01005464.1| Oryza sativa (japonica cultivar-group) c... 42 0.26
ref|XM_467944.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.26
>gb|CB636249.1|CB636249 OSJNEa01H23.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa01H23 3', mRNA sequence
Length = 715
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Minus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 374 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 315
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 314 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 255
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 254 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 195
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 194 gttggggcctgaaggttgtaaatcaaactca 164
>gb|CB661027.1|CB661027 OSJNEd03F22.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03F22 3', mRNA sequence
Length = 859
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Minus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 383 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 324
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 264
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 263 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 204
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 203 gttggggcctgaaggttgtaaatcaaactca 173
>dbj|AK100977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143L21, full
insert sequence
Length = 1853
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 1487 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 1546
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1547 gccaccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 1606
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 1607 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 1666
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 1667 gttggggcctgaaggttgtaaatcaaactca 1697
>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0486G03
Length = 146713
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 142174 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 142233
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 142234 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 142293
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 142294 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 142353
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 142354 gttggggcctgaaggttgtaaatcaaactca 142384
>gb|AACV01005463.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005463, whole
genome shotgun sequence
Length = 12222
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Minus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 1384 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 1325
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1324 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 1265
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 1264 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 1205
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 1204 gttggggcctgaaggttgtaaatcaaactca 1174
>ref|XM_467941.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1852
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 1487 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 1546
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1547 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 1606
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 1607 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 1666
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 1667 gttggggcctgaaggttgtaaatcaaactca 1697
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 7370517 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 7370576
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7370577 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 7370636
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 7370637 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 7370696
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 7370697 gttggggcctgaaggttgtaaatcaaactca 7370727
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 7377254 ggcactgcgacgacgtgagctgggg 7377278
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0539D10
Length = 158691
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 49531 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 49590
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 49591 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 49650
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 49651 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 49710
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 49711 gttggggcctgaaggttgtaaatcaaactca 49741
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 56268 ggcactgcgacgacgtgagctgggg 56292
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 18801862 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 18801921
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 18801922 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 18801981
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 18801982 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 18802041
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 18802042 gttggggcctgaaggttgtaaatcaaactca 18802072
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 18808993 ggcactgcgacgacgtgagctgggg 18809017
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 32254926 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 32254985
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 32254986 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 32255045
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 32255046 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 32255105
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 32255106 gttggggcctgaaggttgtaaatcaaactca 32255136
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 10096146 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 10096100
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 32262057 ggcactgcgacgacgtgagctgggg 32262081
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 180 bits (91), Expect = 4e-043
Identities = 181/211 (85%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||||||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 32205518 ccggcctgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 32205577
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 32205578 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 32205637
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | ||||||||||||||||||||| |
Sbjct: 32205638 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgaggacgtca 32205697
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 32205698 gttggggcctgaaggttgtaaatcaaactca 32205728
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 10087633 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 10087587
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 32212255 ggcactgcgacgacgtgagctgggg 32212279
>gb|AU092062.1|AU092062 AU092062 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10371, mRNA sequence
Length = 496
Score = 157 bits (79), Expect = 6e-036
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 10 ccggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgt 69
||||| ||| ||||||||||||| | | |||||||||||||| | ||| ||||| ||||
Sbjct: 122 ccggcntgacgccgtggatcatgttcaggtcggagaaccacgccatgccggacccgccgt 181
Query: 70 gcgtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaagg 129
|| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 182 gccgccgcgccatgtcgatcgagccgtgcttccatcaggctcccttctacgactgcaagg 241
Query: 130 cgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtga 189
||| || | || | || |||||||| | ||||| | |||||||||||||||| || |
Sbjct: 242 cgaagaggaacgctgacctgggcaagatggtgccgttcgtgaggcactgcgagnnngtca 301
Query: 190 gctgggggctcaagattgtagatcaaactca 220
| ||||| || ||| ||||| ||||||||||
Sbjct: 302 gttggggcctgaaggttgtaaatcaaactca 332
>gb|CB651638.1|CB651638 OSJNEb16K20.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16K20 3', mRNA sequence
Length = 734
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 297 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 251
>dbj|AK060517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A08, full
insert sequence
Length = 1612
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 1290 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 1336
>dbj|AK071664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B19, full
insert sequence
Length = 2056
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 1765 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 1811
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0017G06
Length = 150628
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 35327 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 35281
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0413A11
Length = 188440
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 162326 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 162280
>gb|AACV01003870.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003870, whole
genome shotgun sequence
Length = 7011
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 4198 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 4244
>ref|XM_464933.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2057
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 1766 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 1812
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 4118015 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 4117969
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 150 ggcaaggtagtgccttacgtgaggcactgcgaggacgtgagctgggg 196
|||||||| ||||| |||||| ||| |||||||||||| ||||||||
Sbjct: 10096146 ggcaaggtggtgccgtacgtgcggcgctgcgaggacgtcagctgggg 10096100
>dbj|AK071124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080C23, full
insert sequence
Length = 1805
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 1462 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 1521
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 1522 cgtgtccatggagccgtgctt 1542
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0021C04
Length = 162115
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 136675 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 136734
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 136735 cgtgtccatggagccgtgctt 136755
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0701E03
Length = 183245
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 60057 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 60116
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 60117 cgtgtccatggagccgtgctt 60137
>gb|AACV01013292.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013292, whole
genome shotgun sequence
Length = 11757
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 8309 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 8250
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 8249 cgtgtccatggagccgtgctt 8229
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 1436108 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 1436167
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 1436168 cgtgtccatggagccgtgctt 1436188
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 5663129 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 5663188
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 5663189 cgtgtccatggagccgtgctt 5663209
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 5663129 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 5663188
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 5663189 cgtgtccatggagccgtgctt 5663209
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 gccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgcgtccgcgc 79
||||||| ||||| | ||| ||||||||| | |||||| ||||| |||||| |||||
Sbjct: 5744528 gccgtgggtcatgttcaagccggagaacctcacgacgccggacccgccgtgccggcgcgc 5744587
Query: 80 catgtccatcgagccgtgctt 100
| ||||||| |||||||||||
Sbjct: 5744588 cgtgtccatggagccgtgctt 5744608
>dbj|AK102499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095B15, full
insert sequence
Length = 2043
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 1825 ggcactgcgacgacgtgagctgggg 1849
>gb|AACV01005464.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005464, whole
genome shotgun sequence
Length = 8589
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 5698 ggcactgcgacgacgtgagctgggg 5722
>ref|XM_467944.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2043
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 ggcactgcgaggacgtgagctgggg 196
|||||||||| ||||||||||||||
Sbjct: 1825 ggcactgcgacgacgtgagctgggg 1849
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 633,580
Number of Sequences: 438736
Number of extensions: 633580
Number of successful extensions: 13966
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13515
Number of HSP's gapped (non-prelim): 439
length of query: 466
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 445
effective length of database: 2,791,206,460
effective search space: 1242086874700
effective search space used: 1242086874700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)