BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5110719.2.1
(581 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK103241.1| Oryza sativa (japonica cultivar-group) cDNA... 392 e-107
gb|CB656351.1|CB656351 OSJNEc10J17.f OSJNEc Oryza sativa (j... 301 2e-079
ref|XM_481816.1| Oryza sativa (japonica cultivar-group), mRNA 196 9e-048
dbj|AP004011.3| Oryza sativa (japonica cultivar-group) geno... 182 1e-043
dbj|AP004736.2| Oryza sativa (japonica cultivar-group) geno... 182 1e-043
gb|AACV01019465.1| Oryza sativa (japonica cultivar-group) c... 182 1e-043
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 182 1e-043
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 182 1e-043
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 182 1e-043
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 182 1e-043
gb|CB677204.1|CB677204 OSJNEe13O10.r OSJNEe Oryza sativa (j... 111 4e-022
gb|CF196432.1|CF196432 Azvi2.2_H09 AZ-VI Oryza sativa (japo... 111 4e-022
dbj|AK071731.1| Oryza sativa (japonica cultivar-group) cDNA... 94 1e-016
dbj|AP004459.2| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
dbj|AP004396.3| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|AACV01018197.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 94 1e-016
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|AU065238.1|AU065238 AU065238 Rice cDNA from immature lea... 88 6e-015
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 54 9e-005
dbj|AP004279.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AACV01014523.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|CB665543.1|CB665543 OSJNEd12A13.f OSJNEd Oryza sativa (j... 48 0.005
gb|CB665544.1|CB665544 OSJNEd12A13.r OSJNEd Oryza sativa (j... 48 0.005
gb|CB676267.1|CB676267 OSJNEe12G18.r OSJNEe Oryza sativa (j... 48 0.005
dbj|AP003944.1| Oryza sativa (japonica cultivar-group) chro... 48 0.005
dbj|AK061987.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK069306.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
ref|XM_475467.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
>dbj|AK103241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123H06, full
insert sequence
Length = 1603
Score = 392 bits (198), Expect = e-107
Identities = 474/566 (83%)
Strand = Plus / Plus
Query: 9 atataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcctgatgct 68
||||||||||| |||||||| |||||||||||||| || |||||||| ||||| || ||
Sbjct: 506 atataccatgtgaaaagtcatttgcagaaatacaggcttgcaaagtacattcccgactct 565
Query: 69 tcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccggacttgag 128
||| ||||||| |||||| | || ||||||||||| |||||||||||||| |||||||||
Sbjct: 566 tcagctgatggtaacaaggctgaaaacaaagaccctggagatttgcttgctggacttgag 625
Query: 129 ggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcgg 188
||||||||||| || |||||||||||||| || || |||||||||||||||||||||||
Sbjct: 626 ggatcctctggcttacagatatctgaagctctgaagctgcagatggaggtccaaaagcgt 685
Query: 189 ctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcagggaaag 248
|| || |||||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 686 ctacatgaacagttagaagtacaaaggcagctgcagttgcgcattgaggcgcagggcaag 745
Query: 249 tacctccagaagatcatcgaagagcagcagcgcttaacaggtgtgaaatctgaaactcct 308
|||||| |||||||||| || ||||||||||| | || |||||||||||||| |||
Sbjct: 746 tacctcaagaagatcattgaggagcagcagcgtctcggtggagtgaaatctgaaacacct 805
Query: 309 gctggaggtgcttctgtcactgtatcaagtgatcaattcccagactcggagcggactgag 368
|||| |||||||| ||||| | |||| ||||| ||||| || || || | |||||
Sbjct: 806 gctgctggtgcttccgtcacattgccaagcgatcagttccctgattccgaaagaactgac 865
Query: 369 ccctccacacctgcaccagcatccgagtctccaactcaagttggtgcttccaatagggac 428
||||| || |||||||| |||| || ||||||||||||| || |||| |||||||||
Sbjct: 866 ccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaatagggac 925
Query: 429 actggagaccgaactgaagcaaccaagagcacctgtcatggtgattctctttcccgcaac 488
| ||||| | || ||||||||||||||| || | | ||||||||| |||||| |
Sbjct: 926 aatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcccgccat 985
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|| ||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||
Sbjct: 986 gaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtccaaagcat 1045
Query: 549 gaaagggcagccaagaggcagcgagg 574
|| |||||||| |||||||| |||||
Sbjct: 1046 gagagggcagcaaagaggcaacgagg 1071
>gb|CB656351.1|CB656351 OSJNEc10J17.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10J17 5', mRNA sequence
Length = 802
Score = 301 bits (152), Expect = 2e-079
Identities = 278/320 (86%)
Strand = Plus / Plus
Query: 9 atataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcctgatgct 68
||||||||||| |||||||| |||||||||||||| || |||||||| ||||| || ||
Sbjct: 479 atataccatgtgaaaagtcatttgcagaaatacaggcttgcaaagtacattcccgactct 538
Query: 69 tcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccggacttgag 128
||| ||||||| |||||| | || ||||||||||| |||||||||||||| |||||||||
Sbjct: 539 tcagctgatggtaacaaggctgaaaacaaagaccctggagatttgcttgctggacttgag 598
Query: 129 ggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcgg 188
||||||||||| || |||||||||||||| || || |||||||||||||||||||||||
Sbjct: 599 ggatcctctggcttacagatatctgaagctctgaagctgcagatggaggtccaaaagcgt 658
Query: 189 ctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcagggaaag 248
|| || |||||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 659 ctacatgaacagttagaagtacaaaggcagctgcagttgcgcattgaggcgcagggcaag 718
Query: 249 tacctccagaagatcatcgaagagcagcagcgcttaacaggtgtgaaatctgaaactcct 308
|||||| |||||||||| || ||| ||||||| | || |||||||||||||| |||
Sbjct: 719 tacctcaagaagatcattgaggagtagcagcgtctcggtggagtgaaatctgaaacacct 778
Query: 309 gctggaggtgcttctgtcac 328
|||| |||||||| |||||
Sbjct: 779 gctgctggtgcttccgtcac 798
>ref|XM_481816.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 924
Score = 196 bits (99), Expect = 9e-048
Identities = 231/275 (84%)
Strand = Plus / Plus
Query: 6 acaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcctgat 65
|||||||||||||| ||||||||| | ||||||||| | || |||||||| ||||| ||
Sbjct: 256 acaatataccatgtgaaaagtcacctacagaaataccggcttgcaaagtacattccagac 315
Query: 66 gcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccggactt 125
||||| |||||| |||||| || | ||||| ||||| || ||||| | | ||||
Sbjct: 316 ccttcagctgatgacaacaaggatgaagataaagatccagggaatctgctttctgcactt 375
Query: 126 gagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaaaag 185
|| || || |||||| ||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 376 gaaggttcatctggaatgcagatatctgaagccctgaagctgcagatggaggtccagaag 435
Query: 186 cggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcaggga 245
||||| || ||||| ||||| || ||||||||||| ||| | ||||||||||| |||||
Sbjct: 436 cggctacatgaacaattagaggtgcaaaggcagctacagctgcgaattgaggcgcagggg 495
Query: 246 aagtacctccagaagatcatcgaagagcagcagcg 280
||||| |||||||||||||||||||||||||||||
Sbjct: 496 aagtatctccagaagatcatcgaagagcagcagcg 530
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1381_H04
Length = 130961
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 130307 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 130366
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 130367 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 130426
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 130427 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 130486
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 130487 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 130546
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 130547 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 130606
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 130607 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 130666
Query: 567 cagcgagg 574
|| |||||
Sbjct: 130667 caacgagg 130674
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 130034 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 130093
Query: 204 gaagta 209
||||||
Sbjct: 130094 gaagta 130099
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 129395 aacaaagaccctggagatttgcttgctggacttgagggatcctc 129438
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0062A09
Length = 173541
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 12165 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 12224
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 12225 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 12284
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 12285 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 12344
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 12345 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 12404
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 12405 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 12464
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 12465 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 12524
Query: 567 cagcgagg 574
|| |||||
Sbjct: 12525 caacgagg 12532
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 11892 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 11951
Query: 204 gaagta 209
||||||
Sbjct: 11952 gaagta 11957
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 11253 aacaaagaccctggagatttgcttgctggacttgagggatcctc 11296
>gb|AACV01019465.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019465, whole
genome shotgun sequence
Length = 31006
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Minus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 28495 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 28436
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 28435 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 28376
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 28375 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 28316
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 28315 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 28256
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 28255 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 28196
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 28195 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 28136
Query: 567 cagcgagg 574
|| |||||
Sbjct: 28135 caacgagg 28128
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 28768 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 28709
Query: 204 gaagta 209
||||||
Sbjct: 28708 gaagta 28703
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 29407 aacaaagaccctggagatttgcttgctggacttgagggatcctc 29364
>ref|NT_107079.1| Oryza sativa (japonica cultivar-group)
Length = 5472939
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 4474288 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 4474347
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 4474348 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 4474407
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 4474408 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 4474467
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 4474468 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 4474527
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 4474528 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 4474587
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 4474588 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 4474647
Query: 567 cagcgagg 574
|| |||||
Sbjct: 4474648 caacgagg 4474655
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 4474015 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 4474074
Query: 204 gaagta 209
||||||
Sbjct: 4474075 gaagta 4474080
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 4473376 aacaaagaccctggagatttgcttgctggacttgagggatcctc 4473419
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078
genomic scaffold, whole genome shotgun sequence
Length = 4067473
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 933846 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 933905
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 933906 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 933965
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 933966 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 934025
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 934026 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 934085
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 934086 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 934145
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 934146 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 934205
Query: 567 cagcgagg 574
|| |||||
Sbjct: 934206 caacgagg 934213
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 933573 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 933632
Query: 204 gaagta 209
||||||
Sbjct: 933633 gaagta 933638
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 932934 aacaaagaccctggagatttgcttgctggacttgagggatcctc 932977
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 6340084 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 6340143
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 6340144 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 6340203
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 6340204 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 6340263
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 6340264 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 6340323
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 6340324 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 6340383
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 6340384 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 6340443
Query: 567 cagcgagg 574
|| |||||
Sbjct: 6340444 caacgagg 6340451
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 6339811 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 6339870
Query: 204 gaagta 209
||||||
Sbjct: 6339871 gaagta 6339876
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 6339172 aacaaagaccctggagatttgcttgctggacttgagggatcctc 6339215
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 182 bits (92), Expect = 1e-043
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 207 gtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatc 266
|||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||
Sbjct: 7278202 gtacaaaggcagctgcagttgcgcattgaggcgcagggcaagtacctcaagaagatcatt 7278261
Query: 267 gaagagcagcagcgcttaacaggtgtgaaatctgaaactcctgctggaggtgcttctgtc 326
|| ||||||||||| | || |||||||||||||| ||||||| |||||||| |||
Sbjct: 7278262 gaggagcagcagcgtctcggtggagtgaaatctgaaacacctgctgctggtgcttccgtc 7278321
Query: 327 actgtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcacca 386
|| | |||| ||||| ||||| || || || | ||||| ||||| || ||||||||
Sbjct: 7278322 acattgccaagcgatcagttccctgattccgaaagaactgacccctcgactcctgcacct 7278381
Query: 387 gcatccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaa 446
|||| || ||||||||||||| || |||| |||||||||| ||||| | || |||
Sbjct: 7278382 acatctgaatctccaactcaaggtgtaccttcgaatagggacaatggaggacaaaacgaa 7278441
Query: 447 gcaaccaagagcacctgtcatggtgattctctttcccgcaacgagccactaacccctgat 506
|||||||||||| || | | ||||||||| |||||| | || |||||||||||||||
Sbjct: 7278442 gcaaccaagagcccccagcgcgatgattctctgtcccgccatgaaccactaacccctgat 7278501
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||
Sbjct: 7278502 tccaactgtcagcctggttctcctaccgctagtccaaagcatgagagggcagcaaagagg 7278561
Query: 567 cagcgagg 574
|| |||||
Sbjct: 7278562 caacgagg 7278569
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 144 cagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagtta 203
|||||||||||||| || || ||||||||||||||||||||||| || || |||||||||
Sbjct: 7277929 cagatatctgaagctctgaagctgcagatggaggtccaaaagcgtctacatgaacagtta 7277988
Query: 204 gaagta 209
||||||
Sbjct: 7277989 gaagta 7277994
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 93 aacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 7277290 aacaaagaccctggagatttgcttgctggacttgagggatcctc 7277333
>gb|CB677204.1|CB677204 OSJNEe13O10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13O10 3', mRNA sequence
Length = 794
Score = 111 bits (56), Expect = 4e-022
Identities = 173/212 (81%)
Strand = Plus / Minus
Query: 363 actgagccctccacacctgcaccagcatccgagtctccaactcaagttggtgcttccaat 422
||||| ||||| || |||||||| |||| || ||||||||||||| || |||| |||
Sbjct: 750 actgacccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaat 691
Query: 423 agggacactggagaccgaactgaagcaaccaagagcacctgtcatggtgattctctttcc 482
||||||| ||||| | || ||||||||||||||| || | | ||||||||| |||
Sbjct: 690 agggacaatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcc 631
Query: 483 cgcaacgagccactaacccctgattccaactgccagaacggttctcctgtcgctagtcca 542
||| | || ||||||||||||||||||||||| ||| ||||||||| ||||||||||
Sbjct: 630 cgccatgaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtcca 571
Query: 543 aaccatgaaagggcagccaagaggcagcgagg 574
|| ||||| |||||||| |||||||| |||||
Sbjct: 570 aagcatgagagggcagcaaagaggcaacgagg 539
>gb|CF196432.1|CF196432 Azvi2.2_H09 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2H09 5', mRNA sequence
Length = 560
Score = 111 bits (56), Expect = 4e-022
Identities = 173/212 (81%)
Strand = Plus / Plus
Query: 363 actgagccctccacacctgcaccagcatccgagtctccaactcaagttggtgcttccaat 422
||||| ||||| || |||||||| |||| || ||||||||||||| || |||| |||
Sbjct: 14 actgacccctcgactcctgcacctacatctgaatctccaactcaaggtgtaccttcgaat 73
Query: 423 agggacactggagaccgaactgaagcaaccaagagcacctgtcatggtgattctctttcc 482
||||||| ||||| | || ||||||||||||||| || | | ||||||||| |||
Sbjct: 74 agggacaatggaggacaaaacgaagcaaccaagagcccccagcgcgatgattctctgtcc 133
Query: 483 cgcaacgagccactaacccctgattccaactgccagaacggttctcctgtcgctagtcca 542
||| | || ||||||||||||||||||||||| ||| ||||||||| ||||||||||
Sbjct: 134 cgccatgaaccactaacccctgattccaactgtcagcctggttctcctaccgctagtcca 193
Query: 543 aaccatgaaagggcagccaagaggcagcgagg 574
|| ||||| |||||||| |||||||| |||||
Sbjct: 194 aagcatgagagggcagcaaagaggcaacgagg 225
>dbj|AK071731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114F03, full
insert sequence
Length = 1423
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
||||||||||||| ||||||||||| || ||||| ||||| || ||||||||||| |||
Sbjct: 583 tgcagatggaggtgcaaaagcggctacatgaacaattagaggtgcaaaggcagctacagc 642
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagcagcg 280
| || || || || || |||| |||||||||||||||||| || |||||||||||
Sbjct: 643 tccggatagaagcccaaggaaggtacctccagaagatcattgaggagcagcagcg 697
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0410E11
Length = 150200
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 142567 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 142626
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 142627 gagcagcagcg 142637
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 141731 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 141790
Query: 197 acagttaga 205
||| |||||
Sbjct: 141791 acaattaga 141799
>dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0404D10
Length = 155069
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 22868 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 22927
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 22928 gagcagcagcg 22938
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 22032 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 22091
Query: 197 acagttaga 205
||| |||||
Sbjct: 22092 acaattaga 22100
>gb|AACV01018197.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018197, whole
genome shotgun sequence
Length = 18992
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 16264 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 16323
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 16324 gagcagcagcg 16334
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 15428 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 15487
Query: 197 acagttaga 205
||| |||||
Sbjct: 15488 acaattaga 15496
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 15470325 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 15470384
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 15470385 gagcagcagcg 15470395
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 15469489 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 15469548
Query: 197 acagttaga 205
||| |||||
Sbjct: 15469549 acaattaga 15469557
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 6946014 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 6946073
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 6946074 gagcagcagcg 6946084
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 6945178 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 6945237
Query: 197 acagttaga 205
||| |||||
Sbjct: 6945238 acaattaga 6945246
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 14548020 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 14548079
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 14548080 gagcagcagcg 14548090
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 14547184 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 14547243
Query: 197 acagttaga 205
||| |||||
Sbjct: 14547244 acaattaga 14547252
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 15708412 caaaggcagctacagctgcgaattgaggcgcaggggaagtatctccagaagatcatcgaa 15708471
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 15708472 gagcagcagcg 15708482
Score = 81.8 bits (41), Expect = 4e-013
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 137 tggattgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacga 196
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||| || ||
Sbjct: 15707576 tggaatgcagatatctgaagccctgaagctgcagatggaggtccagaagcggctacatga 15707635
Query: 197 acagttaga 205
||| |||||
Sbjct: 15707636 acaattaga 15707644
>gb|AU065238.1|AU065238 AU065238 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60871_1A, mRNA sequence
Length = 712
Score = 87.7 bits (44), Expect = 6e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
||||||||||||| ||||||||||| || ||||| ||||| || ||||||||||| |||
Sbjct: 578 tgcagatggaggtgcaaaagcggctacatgaacaattagaggtgcaaaggcagctacagc 637
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagcagcg 280
| || || || || || |||| | |||||||||||||||| || |||||||||||
Sbjct: 638 tccggatagaagcccaaggaaggnacctccagaagatcattgaggagcagcagcg 692
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 1354379 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 1354438
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 1354439 gagcagcagcg 1354449
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 1353885 tgcagatggaggtgcaaaagcggctacatgaacaattaga 1353924
>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0556B08
Length = 136775
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 128559 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 128618
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 128619 gagcagcagcg 128629
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 128065 tgcagatggaggtgcaaaagcggctacatgaacaattaga 128104
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 18505 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 18564
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 18565 gagcagcagcg 18575
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 18011 tgcagatggaggtgcaaaagcggctacatgaacaattaga 18050
>gb|AACV01014523.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014523, whole
genome shotgun sequence
Length = 22150
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 11562 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 11503
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 11502 gagcagcagcg 11492
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 12056 tgcagatggaggtgcaaaagcggctacatgaacaattaga 12017
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 5206832 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 5206891
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 5206892 gagcagcagcg 5206902
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 5206338 tgcagatggaggtgcaaaagcggctacatgaacaattaga 5206377
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 22905569 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 22905628
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 22905629 gagcagcagcg 22905639
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 22905075 tgcagatggaggtgcaaaagcggctacatgaacaattaga 22905114
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 54.0 bits (27), Expect = 9e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 210 caaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaagatcatcgaa 269
||||||||||| ||| | || || || || || |||| |||||||||||||||||| ||
Sbjct: 23888894 caaaggcagctacagctccggatagaagcccaaggaaggtacctccagaagatcattgag 23888953
Query: 270 gagcagcagcg 280
|||||||||||
Sbjct: 23888954 gagcagcagcg 23888964
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 23888400 tgcagatggaggtgcaaaagcggctacatgaacaattaga 23888439
>gb|CB665543.1|CB665543 OSJNEd12A13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12A13 5', mRNA sequence
Length = 839
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
|||| ||||||||||| ||||| || || ||||| | || || |||||||||||||||
Sbjct: 449 tgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagc 508
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
| ||||||| || || || |||||| | |||| |||||| || ||||||||
Sbjct: 509 tgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagca 560
>gb|CB665544.1|CB665544 OSJNEd12A13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12A13 3', mRNA sequence
Length = 832
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
|||| ||||||||||| ||||| || || ||||| | || || |||||||||||||||
Sbjct: 696 tgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagc 637
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
| ||||||| || || || |||||| | |||| |||||| || ||||||||
Sbjct: 636 tgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagca 585
>gb|CB676267.1|CB676267 OSJNEe12G18.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12G18 3', mRNA sequence
Length = 622
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
|||| ||||||||||| ||||| || || ||||| | || || |||||||||||||||
Sbjct: 598 tgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagc 539
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
| ||||||| || || || |||||| | |||| |||||| || ||||||||
Sbjct: 538 tgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagca 487
>dbj|AP003944.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1126_F05,
*** SEQUENCING IN PROGRESS ***
Length = 135296
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttaga 205
||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 91816 tgcagatggaggtgcaaaagcggctacatgaacaattaga 91777
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 246 aagtacctccagaagatcatcgaagagca 274
|||||||||||||||||||| || |||||
Sbjct: 91286 aagtacctccagaagatcattgaggagca 91258
>dbj|AK061987.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B07, full
insert sequence
Length = 1535
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
|||| ||||||||||| ||||| || || ||||| | || || |||||||||||||||
Sbjct: 810 tgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagc 869
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
| ||||||| || || || |||||| | |||| |||||| || ||||||||
Sbjct: 870 tgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagca 921
>dbj|AK069306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H08, full
insert sequence
Length = 1823
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
|||| ||||||||||| ||||| || || ||||| | || || |||||||||||||||
Sbjct: 741 tgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagc 800
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
| ||||||| || || || |||||| | |||| |||||| || ||||||||
Sbjct: 801 tgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagca 852
>ref|XM_475467.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 774
Score = 48.1 bits (24), Expect = 0.005
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcagt 225
|||| ||||||||||| ||||| || || ||||| | || || |||||||||||||||
Sbjct: 416 tgcaaatggaggtccagaagcgactccatgaacaacttgaggtgcaaaggcagctgcagc 475
Query: 226 tacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
| ||||||| || || || |||||| | |||| |||||| || ||||||||
Sbjct: 476 tgagaattgaagcacaagggaagtacttgcagatgatcatagaggagcagca 527
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 687,720
Number of Sequences: 438736
Number of extensions: 687720
Number of successful extensions: 11156
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10790
Number of HSP's gapped (non-prelim): 348
length of query: 581
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 560
effective length of database: 2,791,206,460
effective search space: 1563075617600
effective search space used: 1563075617600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)