BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4695478.2.1
(1201 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01020319.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
gb|AC108762.2| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|D48135.1|D48135 RICS14195A Rice green shoot Oryza sativa... 101 9e-019
dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA... 100 3e-018
dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA... 96 5e-017
dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA... 96 5e-017
gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
gb|AACV01020321.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
gb|CF323681.1|CF323681 HDN--04-H21.g1 OsHDAC1-overexpressin... 74 2e-010
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 74 2e-010
dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 74 2e-010
dbj|AP004680.3| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AZ128735.1|AZ128735 OSJNBb0099L02r CUGI Rice BAC Library... 72 8e-010
gb|CB666810.1|CB666810 OSJNEd13N19.f OSJNEd Oryza sativa (j... 72 8e-010
gb|CF294987.1|CF294987 30DGS--04-L16.b1 Rice leaf plasmid c... 72 8e-010
gb|CB640019.1|CB640019 OSJNEa12O24.f OSJNEa Oryza sativa (j... 68 1e-008
gb|CF303289.1|CF303289 ABF1--01-N17.g1 ABF3-overexpressing ... 68 1e-008
dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AK070746.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
dbj|AP004087.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01003485.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|XM_464328.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 60 3e-006
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01002608.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
ref|NM_190422.1| Oryza sativa (japonica cultivar-group), p... 58 1e-005
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 58 1e-005
dbj|AP003734.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AU067974.1|AU067974 AU067974 Rice callus Oryza sativa (j... 56 5e-005
gb|AU069349.1|AU069349 AU069349 Rice callus Oryza sativa (j... 56 5e-005
gb|AU093494.1|AU093494 AU093494 Rice callus Oryza sativa (j... 56 5e-005
gb|AU162706.1|AU162706 AU162706 Rice mature leaf Oryza sati... 56 5e-005
gb|AU163616.1|AU163616 AU163616 Rice panicle at flowering s... 56 5e-005
gb|AU181856.1|AU181856 AU181856 Rice callus (2001) Oryza sa... 56 5e-005
gb|CB645627.1|CB645627 OSJNEb07H08.f OSJNEb Oryza sativa (j... 56 5e-005
gb|CB674632.1|CB674632 OSJNEe09M09.f OSJNEe Oryza sativa (j... 56 5e-005
gb|CB677602.1|CB677602 OSJNEe14L22.f OSJNEe Oryza sativa (j... 56 5e-005
gb|CF280693.1|CF280693 14ETL--07-H12.b1 Rice etiolated leaf... 56 5e-005
gb|CF305867.1|CF305867 HDA1--01-P14.g1 OsHDAC1-overexpressi... 56 5e-005
gb|CF330329.1|CF330329 NACL--05-P23.g1 Rice callus plasmid ... 56 5e-005
dbj|AK059305.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
dbj|AK068824.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
dbj|AP005440.2| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
dbj|AP004646.3| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|AACV01001386.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|AACV01017440.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
ref|NM_193168.1| Oryza sativa (japonica cultivar-group), p... 56 5e-005
ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA 56 5e-005
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 56 5e-005
dbj|AP003370.3| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 56 5e-005
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chro... 54 2e-004
dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AP005415.2| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AU069566.1|AU069566 AU069566 Rice callus Oryza sativa (j... 50 0.003
gb|C28380.1|C28380 C28380 Rice callus cDNA Oryza sativa (ja... 48 0.011
gb|CB672491.1|CB672491 OSJNEe06I21.f OSJNEe Oryza sativa (j... 48 0.011
dbj|AP003283.1| Oryza sativa (japonica cultivar-group) chro... 46 0.044
dbj|AP005561.1| Oryza sativa (japonica cultivar-group) chro... 46 0.044
dbj|AK100234.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.044
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 46 0.044
gb|AACV01002470.1| Oryza sativa (japonica cultivar-group) c... 46 0.044
gb|AACV01019116.1| Oryza sativa (japonica cultivar-group) c... 46 0.044
ref|XM_450149.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.044
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 46 0.044
dbj|AP005680.3| Oryza sativa (japonica cultivar-group) geno... 46 0.044
gb|CH401232.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.044
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.044
gb|D40184.1|D40184 RICS1972A Rice shoot Oryza sativa (japon... 44 0.17
gb|AU062767.1|AU062767 AU062767 Rice callus Oryza sativa (j... 44 0.17
>gb|AACV01020319.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020319, whole
genome shotgun sequence
Length = 31205
Score = 103 bits (52), Expect = 2e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 22512 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggaggagcttgacgagccacg 22571
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 22572 agccgatg 22579
Score = 87.7 bits (44), Expect = 1e-014
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 985 ggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgag 1036
|||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15871 ggtggcgtggacggcgtagccacgggagaggaggagcttgacgagccacgag 15922
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0052C07, complete sequence
Length = 154528
Score = 103 bits (52), Expect = 2e-019
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 35590 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggaggagcttgacgagccacg 35531
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 35530 agccgatg 35523
Score = 99.6 bits (50), Expect = 3e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 42240 ggtcgcggagggtggcgtggacggcgtagccacgggagaggaggagcttgacgagccacg 42181
Query: 1035 ag 1036
||
Sbjct: 42180 ag 42179
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 26503 ggtcgcggagggtggcgtgcacggcgtagccacgggagaggaggagcttgacgagccacg 26444
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 26443 agccgatg 26436
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct: 6503 ggtcgcggagggtggcgtggacggcgtagccacgggagaggagcagcttgacgagccagg 6444
Query: 1035 aggcgatg 1042
||||||||
Sbjct: 6443 aggcgatg 6436
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 21914 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 21855
Query: 1039 gatg 1042
||||
Sbjct: 21854 gatg 21851
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 16348 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 16289
Query: 1035 ag 1036
||
Sbjct: 16288 ag 16287
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 103 bits (52), Expect = 2e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 8246876 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggaggagcttgacgagccacg 8246935
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 8246936 agccgatg 8246943
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct: 8276343 ggtcgcggagggtggcgtggacggcgtagccacgggagaggagcagcttgacgagccagg 8276402
Query: 1035 aggcgatg 1042
||||||||
Sbjct: 8276403 aggcgatg 8276410
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 8256078 ggtcgcggagggtggcgtgcacggcgtagccacgggagaggaggagcttgacgagccacg 8256137
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 8256138 agccgatg 8256145
Score = 87.7 bits (44), Expect = 1e-014
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 985 ggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgag 1036
|||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8240235 ggtggcgtggacggcgtagccacgggagaggaggagcttgacgagccacgag 8240286
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 8260666 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 8260725
Query: 1039 gatg 1042
||||
Sbjct: 8260726 gatg 8260729
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 8266232 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 8266291
Query: 1035 ag 1036
||
Sbjct: 8266292 ag 8266293
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 103 bits (52), Expect = 2e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 17720687 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggaggagcttgacgagccacg 17720746
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 17720747 agccgatg 17720754
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct: 17750154 ggtcgcggagggtggcgtggacggcgtagccacgggagaggagcagcttgacgagccagg 17750213
Query: 1035 aggcgatg 1042
||||||||
Sbjct: 17750214 aggcgatg 17750221
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 17729889 ggtcgcggagggtggcgtgcacggcgtagccacgggagaggaggagcttgacgagccacg 17729948
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 17729949 agccgatg 17729956
Score = 87.7 bits (44), Expect = 1e-014
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 985 ggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgag 1036
|||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 17714046 ggtggcgtggacggcgtagccacgggagaggaggagcttgacgagccacgag 17714097
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 17734477 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 17734536
Query: 1039 gatg 1042
||||
Sbjct: 17734537 gatg 17734540
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 17740043 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 17740102
Query: 1035 ag 1036
||
Sbjct: 17740103 ag 17740104
Score = 46.1 bits (23), Expect = 0.044
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1012 gaggaggagcttgacgagccacgaggcgatg 1042
||||||| |||||||||||||||| ||||||
Sbjct: 1602044 gaggaggcgcttgacgagccacgacgcgatg 1602074
>gb|D48135.1|D48135 RICS14195A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 430
Score = 101 bits (51), Expect = 9e-019
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 138 ggtcgcggagggtgncgtggacggcgtagccacgggagaggaggagcttgacgagccacg 79
Query: 1035 ag 1036
||
Sbjct: 78 ag 77
>dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044G18, full
insert sequence
Length = 1342
Score = 99.6 bits (50), Expect = 3e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 184 ggtcgcggagggtggcgtggacggcgtagccacgggagaggaggagcttgacgagccacg 125
Query: 1035 ag 1036
||
Sbjct: 124 ag 123
>dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F11, full
insert sequence
Length = 1270
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 223 ggtcgcggagggtggcgtgcacggcgtagccacgggagaggaggagcttgacgagccacg 164
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 163 agccgatg 156
>dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159B10, full
insert sequence
Length = 1452
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 224 ggtcgcggagggtggcgtgcacggcgtagccacgggagaggaggagcttgacgagccacg 165
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 164 agccgatg 157
>gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020320, whole
genome shotgun sequence
Length = 17865
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 ggtcgcggagggtggcgtgcacggcgtagccacgggagaggaggagcttgacgagccacg 468
Query: 1035 aggcgatg 1042
|| |||||
Sbjct: 469 agccgatg 476
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 4997 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 5056
Query: 1039 gatg 1042
||||
Sbjct: 5057 gatg 5060
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 10563 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 10622
Query: 1035 ag 1036
||
Sbjct: 10623 ag 10624
>gb|AACV01020321.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020321, whole
genome shotgun sequence
Length = 5887
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct: 1809 ggtcgcggagggtggcgtggacggcgtagccacgggagaggagcagcttgacgagccagg 1868
Query: 1035 aggcgatg 1042
||||||||
Sbjct: 1869 aggcgatg 1876
>gb|CF323681.1|CF323681 HDN--04-H21.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-H21, mRNA sequence
Length = 450
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 212 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 154
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02,
*** SEQUENCING IN PROGRESS ***
Length = 140327
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 13385 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 13327
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full
insert sequence
Length = 1737
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 593 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 535
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full
insert sequence
Length = 1232
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 146 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 88
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 2171775 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 2171833
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0029G06
Length = 169711
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 39971 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 40029
>gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014583, whole
genome shotgun sequence
Length = 16067
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 7229 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 7287
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 6079864 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 6079922
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 23778601 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 23778659
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 73.8 bits (37), Expect = 2e-010
Identities = 54/59 (91%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 980 cggacggtgccgtggacggtgtagc---cacgggagaggaggagcttgacgagccacga 1035
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 24706290 cggacggtgccatggacggtgtagcagccgcgggagaggaggagcttgacgagccacga 24706348
>gb|AZ128735.1|AZ128735 OSJNBb0099L02r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0099L02r, DNA
sequence
Length = 908
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 397 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 456
Query: 1039 gatg 1042
||||
Sbjct: 457 gatg 460
>gb|CB666810.1|CB666810 OSJNEd13N19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N19 5', mRNA sequence
Length = 825
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 123 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 64
Query: 1039 gatg 1042
||||
Sbjct: 63 gatg 60
>gb|CF294987.1|CF294987 30DGS--04-L16.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-L16, mRNA sequence
Length = 341
Score = 71.9 bits (36), Expect = 8e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 979 gcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggc 1038
||||||||||||||||| | |||||| | |||||||||||| ||||||||||||||| |
Sbjct: 189 gcggacggtgccgtggaagaagtagccgcaggagaggaggagattgacgagccacgagcc 130
Query: 1039 gatg 1042
||||
Sbjct: 129 gatg 126
>gb|CB640019.1|CB640019 OSJNEa12O24.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa12O24 5', mRNA sequence
Length = 285
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 170 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 111
Query: 1035 ag 1036
||
Sbjct: 110 ag 109
>gb|CF303289.1|CF303289 ABF1--01-N17.g1 ABF3-overexpressing transgenic rice lambda phage cDNA
library (ABF1) Oryza sativa (japonica cultivar-group)
cDNA clone ABF1--01-N17, mRNA sequence
Length = 556
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 184 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 125
Query: 1035 ag 1036
||
Sbjct: 124 ag 123
>dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E03, full
insert sequence
Length = 1272
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||| ||| | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 198 ggtcacggaccgtggcatggacggcgtagccgcgggagaggaggagctcgacgagccacg 139
Query: 1035 ag 1036
||
Sbjct: 138 ag 137
>dbj|AK070746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M01, full
insert sequence
Length = 1335
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 197 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 148
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1297_C09
Length = 163378
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 32686 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 32637
>gb|AACV01003485.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003485, whole
genome shotgun sequence
Length = 34476
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 63 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 14
>ref|XM_464328.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1335
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 197 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 148
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 1463155 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 1463106
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 4578643 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 4578594
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 4578643 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 4578594
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 986 gtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacga 1035
|||||| |||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct: 4497307 gtgccgcggacggcgtagccgcgggcgaggaggagcttgacgatccacga 4497258
>gb|AACV01002608.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002608, whole
genome shotgun sequence
Length = 16375
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 13298 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 13357
Query: 1042 g 1042
|
Sbjct: 13358 g 13358
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 35505030 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 35504971
Query: 1042 g 1042
|
Sbjct: 35504970 g 35504970
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 19084838 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 19084779
Query: 1040 atgt 1043
||||
Sbjct: 19084778 atgt 19084775
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gattccgttggagttgctcttac 55
|||||||||||||||||||||||
Sbjct: 33462958 gattccgttggagttgctcttac 33462980
>ref|NM_190422.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 981
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 120 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 61
Query: 1042 g 1042
|
Sbjct: 60 g 60
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 9952413 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 9952354
Query: 1042 g 1042
|
Sbjct: 9952353 g 9952353
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gattccgttggagttgctcttac 55
|||||||||||||||||||||||
Sbjct: 7910341 gattccgttggagttgctcttac 7910363
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088C09
Length = 154084
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 48309 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 48250
Query: 1042 g 1042
|
Sbjct: 48249 g 48249
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 9708710 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 9708651
Query: 1042 g 1042
|
Sbjct: 9708650 g 9708650
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gattccgttggagttgctcttac 55
|||||||||||||||||||||||
Sbjct: 7840623 gattccgttggagttgctcttac 7840645
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 34910431 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 34910372
Query: 1042 g 1042
|
Sbjct: 34910371 g 34910371
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 18719891 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 18719832
Query: 1040 atgt 1043
||||
Sbjct: 18719831 atgt 18719828
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gattccgttggagttgctcttac 55
|||||||||||||||||||||||
Sbjct: 33042344 gattccgttggagttgctcttac 33042366
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 982 gacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcgat 1041
||||||| |||||||||||||||| ||| ||||||||| ||||||||||||| ||||
Sbjct: 35424360 gacggtggcgtggacggtgtagccgcggtcgaggaggaggcggacgagccacgagccgat 35424301
Query: 1042 g 1042
|
Sbjct: 35424300 g 35424300
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 19006121 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 19006062
Query: 1040 atgt 1043
||||
Sbjct: 19006061 atgt 19006058
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 gattccgttggagttgctcttac 55
|||||||||||||||||||||||
Sbjct: 33382288 gattccgttggagttgctcttac 33382310
>gb|AU067974.1|AU067974 AU067974 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11360_11A, mRNA sequence
Length = 392
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 278 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 219
Query: 1040 atgt 1043
||||
Sbjct: 218 atgt 215
>gb|AU069349.1|AU069349 AU069349 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60720_7A, mRNA sequence
Length = 376
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 260 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 201
Query: 1040 atgt 1043
||||
Sbjct: 200 atgt 197
>gb|AU093494.1|AU093494 AU093494 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C40055, mRNA sequence
Length = 372
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 252 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 193
Query: 1040 atgt 1043
||||
Sbjct: 192 atgt 189
>gb|AU162706.1|AU162706 AU162706 Rice mature leaf Oryza sativa (japonica cultivar-group) cDNA
clone S20782, mRNA sequence
Length = 698
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 259 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 200
Query: 1040 atgt 1043
||||
Sbjct: 199 atgt 196
>gb|AU163616.1|AU163616 AU163616 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3023, mRNA sequence
Length = 447
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 259 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 200
Query: 1040 atgt 1043
||||
Sbjct: 199 atgt 196
>gb|AU181856.1|AU181856 AU181856 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C60838, mRNA sequence
Length = 459
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 270 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 211
Query: 1040 atgt 1043
||||
Sbjct: 210 atgt 207
>gb|CB645627.1|CB645627 OSJNEb07H08.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07H08 5', mRNA sequence
Length = 784
Score = 56.0 bits (28), Expect = 5e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
|||| |||| || |||| |||||||| |||| |||||| ||| ||||||||||||| |||
Sbjct: 268 cggatggtggcgcggaccgtgtagccgcgggcgaggagcagcctgacgagccacgacgcg 209
Query: 1040 atgt 1043
||||
Sbjct: 208 atgt 205
>gb|CB674632.1|CB674632 OSJNEe09M09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09M09 5', mRNA sequence
Length = 845
Score = 56.0 bits (28), Expect = 5e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1009 ggagaggaggagcttgacgagccacgaggcga 1040
|||||||||||||||||| |||||||||||||
Sbjct: 103 ggagaggaggagcttgaccagccacgaggcga 72
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,427,680
Number of Sequences: 438736
Number of extensions: 1427680
Number of successful extensions: 8485
Number of sequences better than 0.5: 93
Number of HSP's better than 0.5 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7803
Number of HSP's gapped (non-prelim): 672
length of query: 1201
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1180
effective length of database: 2,791,206,460
effective search space: 3293623622800
effective search space used: 3293623622800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)