BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC099403.1| Oryza sativa (japonica cultivar-group) chrom... 418 e-114
gb|AC108757.1| Oryza sativa (japonica cultivar-group) chrom... 418 e-114
dbj|AK069564.1| Oryza sativa (japonica cultivar-group) cDNA... 418 e-114
dbj|AK103755.1| Oryza sativa (japonica cultivar-group) cDNA... 418 e-114
gb|AACV01020330.1| Oryza sativa (japonica cultivar-group) c... 418 e-114
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 418 e-114
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 418 e-114
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 418 e-114
gb|CB648102.1|CB648102 OSJNEb11F12.f OSJNEb Oryza sativa (j... 168 2e-039
gb|CB654532.1|CB654532 OSJNEc07C08.f OSJNEc Oryza sativa (j... 168 2e-039
gb|CO435609.1|CO435609 OsMR675 5MT resistant rice mutant cD... 168 2e-039
gb|AU184509.2|AU184509 AU184509 Rice root Oryza sativa (jap... 168 2e-039
dbj|AK060080.1| Oryza sativa (japonica cultivar-group) cDNA... 168 2e-039
dbj|AK102814.1| Oryza sativa (japonica cultivar-group) cDNA... 168 2e-039
dbj|AK104718.1| Oryza sativa (japonica cultivar-group) cDNA... 168 2e-039
dbj|AK106190.1| Oryza sativa (japonica cultivar-group) cDNA... 168 2e-039
dbj|AP003865.2| Oryza sativa (japonica cultivar-group) geno... 168 2e-039
dbj|AP003887.3| Oryza sativa (japonica cultivar-group) geno... 168 2e-039
gb|AACV01018872.1| Oryza sativa (japonica cultivar-group) c... 168 2e-039
ref|XM_483389.1| Oryza sativa (japonica cultivar-group), mRNA 168 2e-039
ref|XM_507298.2| PREDICTED Oryza sativa (japonica cultivar-... 168 2e-039
ref|XM_507594.1| PREDICTED Oryza sativa (japonica cultivar-... 168 2e-039
ref|XM_507595.1| PREDICTED Oryza sativa (japonica cultivar-... 168 2e-039
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 168 2e-039
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 168 2e-039
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 168 2e-039
gb|CB652613.1|CB652613 OSJNEc02N02.f OSJNEc Oryza sativa (j... 163 1e-037
gb|C72113.1|C72113 C72113 Rice panicle at flowering stage O... 101 4e-019
emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC O... 70 1e-009
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|AACV01024383.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
gb|CH401273.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC O... 62 3e-007
ref|NT_107160.1| Oryza sativa (japonica cultivar-group) 62 3e-007
gb|AACV01024221.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
>gb|AC099403.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBa0005C18, *** SEQUENCING IN PROGRESS ***, 5 ordered
pieces
Length = 145550
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Minus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 34914 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 34855
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 34854 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 34795
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 34794 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 34735
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 34734 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 34675
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 34674 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 34615
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 34614 gatggagctctgcgccttcctcg 34592
>gb|AC108757.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNba0056P13, *** SEQUENCING IN PROGRESS ***, 9 ordered
pieces
Length = 173729
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 52852 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 52911
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 52912 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 52971
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 52972 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 53031
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 53032 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 53091
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 53092 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 53151
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 53152 gatggagctctgcgccttcctcg 53174
>dbj|AK069564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019G16, full
insert sequence
Length = 1455
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 165 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 224
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 225 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 284
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 344
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 345 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 404
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 405 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 464
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 465 gatggagctctgcgccttcctcg 487
>dbj|AK103755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143D05, full
insert sequence
Length = 1649
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 382 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 441
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 442 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 501
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 561
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 562 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 621
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 622 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 681
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 682 gatggagctctgcgccttcctcg 704
>gb|AACV01020330.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020330, whole
genome shotgun sequence
Length = 20978
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 15378 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 15437
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 15438 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 15497
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15498 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 15557
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 15558 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 15617
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 15618 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 15677
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 15678 gatggagctctgcgccttcctcg 15700
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 8385500 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 8385559
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 8385560 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 8385619
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8385620 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 8385679
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 8385680 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 8385739
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 8385740 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 8385799
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 8385800 gatggagctctgcgccttcctcg 8385822
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 17859311 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 17859370
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 17859371 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 17859430
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 17859431 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 17859490
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 17859491 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 17859550
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 17859551 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 17859610
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 17859611 gatggagctctgcgccttcctcg 17859633
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 418 bits (211), Expect = e-114
Identities = 295/323 (91%)
Strand = Plus / Plus
Query: 220 ggcgattctggtgggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaa 279
|||||| ||| | ||||| ||| | |||||| | || ||||||||||| ||||||| ||
Sbjct: 18857138 ggcgatcctgatcggcgggacggtggcgctgatcctgacggcggggacatggaaggtgaa 18857197
Query: 280 gataaagaagtcgcaggagaagatctgtaacaaggggtgggagtgctcggggagcaagta 339
||| ||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 18857198 gatgaaggagtcgcgcgagaagatctgcgacaaggggtgggagtgctcgggtagcaagta 18857257
Query: 340 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgc 399
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18857258 ctgctgcaacgacaccatcaccgacttcttcaaggtgtaccagttcgagaacctcttctc 18857317
Query: 400 caagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcac 459
||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct: 18857318 caagcgcaacagccccgtcgcccacgccgtcggcttctgggactaccagtccttcatcac 18857377
Query: 460 cgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaagcagatgcagat 519
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 18857378 cgccgccgccctcttcgagcccctcggcttctgcaccaccggcggcaagcagatgcagat 18857437
Query: 520 gatggagctctgcgccttcctcg 542
|||||||||||||||||||||||
Sbjct: 18857438 gatggagctctgcgccttcctcg 18857460
>gb|CB648102.1|CB648102 OSJNEb11F12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11F12 5', mRNA sequence
Length = 417
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 195 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 254
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 255 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 314
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 315 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 374
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 375 ggttcggcaccac 387
>gb|CB654532.1|CB654532 OSJNEc07C08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07C08 5', mRNA sequence
Length = 419
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 197 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 256
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 257 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 316
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 317 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 376
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 377 ggttcggcaccac 389
>gb|CO435609.1|CO435609 OsMR675 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 542
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 249 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 308
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 309 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 368
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 369 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 428
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 429 ggttcggcaccac 441
>gb|AU184509.2|AU184509 AU184509 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2487, mRNA sequence
Length = 415
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 200 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 259
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 260 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 319
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 320 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 379
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 380 ggttcggcaccac 392
>dbj|AK060080.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D01, full
insert sequence
Length = 1260
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 209 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 268
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 269 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 328
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 329 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 388
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 389 ggttcggcaccac 401
>dbj|AK102814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108M05, full
insert sequence
Length = 1262
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 211 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 270
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 271 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 330
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 331 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 390
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 391 ggttcggcaccac 403
>dbj|AK104718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A09, full
insert sequence
Length = 1260
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 209 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 268
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 269 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 328
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 329 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 388
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 389 ggttcggcaccac 401
>dbj|AK106190.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E01, full
insert sequence
Length = 1272
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 209 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 268
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 269 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 328
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 329 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 388
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 389 ggttcggcaccac 401
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1081_B12
Length = 124741
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 54868 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 54809
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 54808 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 54749
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 54748 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 54689
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 54688 ggttcggcaccac 54676
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1186_G01
Length = 112077
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 5552 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 5493
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 5492 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 5433
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 5432 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 5373
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 5372 ggttcggcaccac 5360
>gb|AACV01018872.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018872, whole
genome shotgun sequence
Length = 16017
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 3988 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 4047
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 4048 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 4107
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 4108 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 4167
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 4168 ggttcggcaccac 4180
>ref|XM_483389.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1260
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 209 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 268
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 269 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 328
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 329 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 388
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 389 ggttcggcaccac 401
>ref|XM_507298.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1081_B12.117
mRNA
Length = 1272
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 209 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 268
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 269 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 328
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 329 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 388
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 389 ggttcggcaccac 401
>ref|XM_507594.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1081_B12.117
mRNA
Length = 1262
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 211 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 270
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 271 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 330
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 331 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 390
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 391 ggttcggcaccac 403
>ref|XM_507595.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1081_B12.117
mRNA
Length = 1260
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 209 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 268
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 269 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 328
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 329 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 388
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 389 ggttcggcaccac 401
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 25731904 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 25731845
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 25731844 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 25731785
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 25731784 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 25731725
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 25731724 ggttcggcaccac 25731712
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 17203045 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 17202986
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 17202985 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 17202926
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 17202925 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 17202866
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 17202865 ggttcggcaccac 17202853
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 24805051 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 24804992
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 24804991 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 24804932
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 24804931 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 24804872
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 24804871 ggttcggcaccac 24804859
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 168 bits (85), Expect = 2e-039
Identities = 169/193 (87%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct: 25969991 acaaggggtgggagtgcagcgggagccggttctgctgcaacgacaccatcaccgactact 25969932
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaac-acc-cccg-tcgcgcacg 425
|||||| ||||||||||||| | ||||||||| | |||||| ||| | || |||| ||||
Sbjct: 25969931 tcaaggcgtaccagttcgaggagctcttcgcccaccgcaacgaccgctcgctcgcccacg 25969872
Query: 426 ccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagg 485
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct: 25969871 ccgccgggttctgggactaccacgccttcatcaccgccgccgcgctcttcgagccccgcg 25969812
Query: 486 ggttctgcaccac 498
||||| |||||||
Sbjct: 25969811 ggttcggcaccac 25969799
>gb|CB652613.1|CB652613 OSJNEc02N02.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N02 5', mRNA sequence
Length = 808
Score = 163 bits (82), Expect = 1e-037
Identities = 100/106 (94%)
Strand = Plus / Plus
Query: 437 tgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcacc 496
|||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 24 tgggactaccagtccttcatcaccgccgccgccctcttcgagcccctcggcttctgcacc 83
Query: 497 accggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 84 accggccgcaagcagatgcagatgatggagctctgcgccttcctcg 129
>gb|C72113.1|C72113 C72113 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1014_1A, mRNA sequence
Length = 384
Score = 101 bits (51), Expect = 4e-019
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 492 gcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 52
>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 151176
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 33585 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 33639
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
Length = 3813697
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 997898 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 997952
>gb|AACV01024383.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024383, whole
genome shotgun sequence
Length = 16587
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 5847 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 5793
>gb|CH401273.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000110 genomic
scaffold, whole genome shotgun sequence
Length = 2295345
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 2247003 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 2247057
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 72004 ggcaagcagatgcagatggtggagctctgcggcttcctc 72042
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 8000122 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 8000176
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 5825123 ggcaagcagatgcagatggtggagctctgcggcttcctc 5825161
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 8844956 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 8845010
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 6638122 ggcaagcagatgcagatggtggagctctgcggcttcctc 6638160
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 8844839 ttctgcaccacgagaggcaagaagatgcagatgatggagctctacgccttcctcg 8844893
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 6637997 ggcaagcagatgcagatggtggagctctgcggcttcctc 6638035
>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 171861
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 56127 ggcaagcagatgcagatggtggagctctgcggcttcctc 56165
>ref|NT_107160.1| Oryza sativa (japonica cultivar-group)
Length = 1294763
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 832107 ggcaagcagatgcagatggtggagctctgcggcttcctc 832145
>gb|AACV01024221.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024221, whole
genome shotgun sequence
Length = 12379
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 503 ggcaagcagatgcagatgatggagctctgcgccttcctc 541
|||||||||||||||||| |||||||||||| |||||||
Sbjct: 7047 ggcaagcagatgcagatggtggagctctgcggcttcctc 7085
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 745,698
Number of Sequences: 438736
Number of extensions: 745698
Number of successful extensions: 22244
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21769
Number of HSP's gapped (non-prelim): 475
length of query: 542
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 521
effective length of database: 2,791,206,460
effective search space: 1454218565660
effective search space used: 1454218565660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)