BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_472196.1| Oryza sativa (japonica cultivar-group), p... 775 0.0
dbj|AK112050.1| Oryza sativa (japonica cultivar-group) cDNA... 488 e-135
ref|XM_465860.1| Oryza sativa (japonica cultivar-group), mRNA 220 1e-054
gb|AACV01009554.1| Oryza sativa (japonica cultivar-group) c... 133 3e-028
ref|NT_079858.2| Oryza sativa (japonica cultivar-group) 133 3e-028
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromoso... 133 3e-028
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
dbj|AP005285.2| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
dbj|AP004022.3| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
gb|AACV01004412.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 98 1e-017
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
dbj|AK109188.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|CB656200.1|CB656200 OSJNEc10E07.f OSJNEc Oryza sativa (j... 48 0.012
gb|AACV01008834.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
ref|XM_474637.1| Oryza sativa (japonica cultivar-group), p... 48 0.012
ref|NT_107202.1| Oryza sativa (japonica cultivar-group) 48 0.012
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromoso... 48 0.012
gb|AU173137.1|AU173137 AU173137 Rice root Oryza sativa (jap... 46 0.046
gb|AU172481.2|AU172481 AU172481 Rice panicle at flowering s... 46 0.046
dbj|AP005151.1| Oryza sativa (japonica cultivar-group) chro... 46 0.046
dbj|AP005123.4| Oryza sativa (japonica cultivar-group) geno... 46 0.046
dbj|AK120510.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.046
dbj|AP003332.4| Oryza sativa (japonica cultivar-group) geno... 46 0.046
gb|AACV01001670.1| Oryza sativa (japonica cultivar-group) c... 46 0.046
gb|AACV01017774.1| Oryza sativa (japonica cultivar-group) c... 46 0.046
gb|AACV01022113.1| Oryza sativa (japonica cultivar-group) c... 46 0.046
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.046
ref|XM_463361.1| Oryza sativa (japonica cultivar-group), p... 46 0.046
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.046
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.046
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.046
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.046
dbj|AK067770.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK103806.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK108629.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AP004256.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AC104275.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP005455.5| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AC118288.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP006162.2| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AACV01011203.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01016910.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01018141.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01020571.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|XM_481693.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
ref|NT_107226.1| Oryza sativa (japonica cultivar-group) 44 0.18
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP003822.2| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP005925.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.18
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
>ref|XM_472196.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 957
Score = 775 bits (391), Expect = 0.0
Identities = 700/803 (87%)
Strand = Plus / Minus
Query: 202 tacattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcgggg 261
||||| ||||||||||| || || ||||| |||||||| || || ||| | || || ||
Sbjct: 956 tacatcaccatccctccatcgatggtaagaacctgtcccgtgatgtagttggccgcagga 897
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
|| || |||| ||||| ||||| || ||||| |||||||||| |||||||||||||||
Sbjct: 896 ttgagagccaaaaactcaaccaagccagcaacctcctctggtttgccatatctccctaat 837
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| |||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 836 gggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatgtcagat 777
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
|||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 776 gcaatgaaaccaggtgcaattgcattcacattgatatttctgcttgcatattccctagct 717
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|||||||| || |||||||| || ||||||||||| || || |||||||||||||||| |
Sbjct: 716 actgttttcgtcaaaccaataaccccagccttggcagcactgtaattagcttggccaata 657
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|| ||| ||||||||| || ||||| |||||||| |||||||||||| |||| ||||||
Sbjct: 656 ttaccaacaagaccaacaactgatgctatgttgatgatttttccctttttcttcttcatc 597
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacg 621
|||| |||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 596 attatttttgtagcagcttgtgtacagaggaaaacaccagtaagattcaggtcaattacg 537
Query: 622 tcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcatta 681
|||||||| || ||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 536 tcttgccattgtgatttcttcatcctcattaataatgtgtctcgggtaattcctgcattg 477
Query: 682 tttaccagcacatctattgttccccatttatctagagctgctttcatcatagactctaca 741
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 476 tttaccagcacatcaattgttccccatttatcaagagctgctttcatcatagaatccaca 417
Query: 742 tcagcttcttttgaaacatctcctccgaaggtgatagcctcaccaccagatgcttcaatc 801
|| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||| |||
Sbjct: 416 tcggcttcttttgaaacatctcccccgaaggtaatagcctgaccaccacatgcttcgatc 357
Query: 802 tctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaaccttgcat 861
||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 356 tctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggaccttgcac 297
Query: 862 cctgcttttccaagggctagagcagttgccttaccaatccctctagatgcacctgtaaca 921
|| ||||||||||| || | ||||| ||||| |||||||| || || ||||| || |||
Sbjct: 296 ccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggcaccggtcaca 237
Query: 922 acaacaactggagcttccagcttggtagcatcttttacaattgcttgttcaacagcggca 981
| ||||||||||||||||| ||| |||||||||| |||| |||||| |||||||| |||
Sbjct: 236 ataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctcaacagctgca 177
Query: 982 acatgggtttgcacaccagagaa 1004
|||||||| ||||| || |||||
Sbjct: 176 acatgggtctgcacgccggagaa 154
>dbj|AK112050.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D04, full
insert sequence
Length = 742
Score = 488 bits (246), Expect = e-135
Identities = 441/506 (87%)
Strand = Plus / Minus
Query: 202 tacattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcgggg 261
||||| ||||||||||| || || ||||| |||||||| || || ||| | || || ||
Sbjct: 506 tacatcaccatccctccatcgatggtaagaacctgtcccgtgatgtagttggccgcagga 447
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
|| || |||| ||||| ||||| || ||||| |||||||||| |||||||||||||||
Sbjct: 446 ttgagagccaaaaactcaaccaagccagcaacctcctctggtttgccatatctccctaat 387
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| |||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 386 gggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatgtcagat 327
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
|||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 326 gcaatgaaaccaggtgcaattgcattcacattgatatttctgcttgcatattccctagct 267
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|||||||| || |||||||| || ||||||||||| || || |||||||||||||||| |
Sbjct: 266 actgttttcgtcaaaccaataaccccagccttggcagcactgtaattagcttggccaata 207
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|| ||| ||||||||| || ||||| |||||||| |||||||||||| |||| ||||||
Sbjct: 206 ttaccaacaagaccaacaactgatgctatgttgatgatttttccctttttcttcttcatc 147
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacg 621
|||| |||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 146 attatttttgtagcagcttgtgtacagaggaaaacaccagtaagattcaggtcaattacg 87
Query: 622 tcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcatta 681
|||||||| || ||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 86 tcttgccattgtgatttcttcatcctcattaataatgtgtctcgggtaattcctgcattg 27
Query: 682 tttaccagcacatctattgttcccca 707
|||||||||||||| |||||||||||
Sbjct: 26 tttaccagcacatcaattgttcccca 1
>ref|XM_465860.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 948
Score = 220 bits (111), Expect = 1e-054
Identities = 320/389 (82%), Gaps = 3/389 (0%)
Strand = Plus / Minus
Query: 601 gtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtg 660
|||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 539 gtaagattaagatcaactacatcttgccactgagatttcttcattctcagcaacaatgta 480
Query: 661 tctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatctagagct 720
|| ||||| || |||||||| ||||| || ||||| ||||| |||||| |||| | ||||
Sbjct: 479 tcccgtgtgattcctgcattgtttacaagtacatcaattgtaccccatgtatcaacagct 420
Query: 721 gctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcc 780
||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |||
Sbjct: 419 gctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattgcc 360
Query: 781 tcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggca 840
| ||||||| || |||||||||||||| |||| |||||||| ||| | || ||||| |||
Sbjct: 359 tgaccaccaaatccttcaatctctttgcagacttcttcagcatctgttgaagaccgagca 300
Query: 841 tagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatc 900
|| || || | |||||||| || |||||||||| || | ||| | || || |||||
Sbjct: 299 taattcactaagaccttgcagccggcttttccaaaagccaatgcaatggctttcccaatt 240
Query: 901 cctctagatgcacctgtaacaacaacaactggagcttccagcttgg---tagcatctttt 957
|| || || |||||||||||||||||||||||||| || || | ||||||||| |
Sbjct: 239 cccctggaagcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgt 180
Query: 958 acaattgcttgttcaacagcggcaacatg 986
|| | ||||||||||||||| ||||||||
Sbjct: 179 accactgcttgttcaacagctgcaacatg 151
Score = 186 bits (94), Expect = 2e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 289 gcaacttcctctggttggccatatctccctaacggaatggttgacaagattttcttctca 348
|||||||||||||||| |||||||||||||| ||||| ||| || |||||||||||
Sbjct: 833 gcaacttcctctggttcaccatatctccctaagggaatagttatcagatttttcttctca 774
Query: 349 agctcttctccaagttcggcagtcatatcagatgcaatgaaccctggtgcaatagcattc 408
| ||| || ||||||| || |||||||| |||| ||| || || || |||| |||||||
Sbjct: 773 atctcctccccaagttgggaggtcatatctgatgaaataaatccaggagcaacagcattc 714
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
|| | ||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||
Sbjct: 713 actgtaatatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgca 654
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || ||||||| ||||||||| |||||||||||| ||||| || |||||
Sbjct: 653 gccttggcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgct 594
Query: 529 atgttgataatttttccctttctctttttcatcattacttttgttgcagc 578
|||||||||| | |||||||| |||| ||||||||||||||||| |||||
Sbjct: 593 atgttgataactcttccctttttcttcttcatcattacttttgtcgcagc 544
>gb|AACV01009554.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009554, whole
genome shotgun sequence
Length = 11671
Score = 133 bits (67), Expect = 3e-028
Identities = 121/139 (87%)
Strand = Plus / Minus
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
||||||||||||||||||||||| ||||| || |||||||| || |||||||| || |||
Sbjct: 3442 acattgatatttctgcttgcatattccctagctactgttttcgtcaaaccaataacccca 3383
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || || |||||||||||||||| ||| ||| ||||||||| || |||||
Sbjct: 3382 gccttggcagcactgtaattagcttggccaatattaccaacaagaccaacaactgatgct 3323
Query: 529 atgttgataatttttccct 547
|||||||| ||||||||||
Sbjct: 3322 atgttgatgatttttccct 3304
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 580 tgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttc 639
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 2883 tgtgtacagaggaaaacaccagtaagattcaggtcaattacgtcttgccattgtgatttc 2824
Query: 640 ttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
||||||||||| || ||||||||||| ||||| ||||
Sbjct: 2823 ttcatcctcattaataatgtgtctcgggtaattcctg 2787
Score = 117 bits (59), Expect = 2e-023
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 316 cctaacggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcata 375
||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 3618 cctaatgggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatg 3559
Query: 376 tcagatgcaatgaaccctggtgcaatagcattcac 410
|||||||||||||| || |||||||| ||||||||
Sbjct: 3558 tcagatgcaatgaaaccaggtgcaattgcattcac 3524
Score = 109 bits (55), Expect = 4e-021
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct: 1379 accttgcacccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggca 1320
Query: 913 cctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgttca 972
|| || |||| ||||||||||||||||| ||| |||||||||| |||| |||||| |||
Sbjct: 1319 ccggtcacaataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctca 1260
Query: 973 acagcggcaacatgggtttgcac 995
||||| ||||||||||| |||||
Sbjct: 1259 acagctgcaacatgggtctgcac 1237
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 2548 ctgctttcatcatagaatccacatcggcttcttttgaaacatctcccccgaaggtaatag 2489
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| ||||||| ||||
Sbjct: 2488 cctgaccaccacatgcttcgatct 2465
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 801 ctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 1722 ctctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggacct 1667
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 673 cctgcattatttaccagcacatctattgttccccatttatctagagc 719
|||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 2693 cctgcattgtttaccagcacatcaattgttccccatttatcaagagc 2647
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 274 aactcgaccaaccctgcaacttcctctggttggccatatctccct 318
||||| ||||| || ||||| |||||||||| |||||||||||||
Sbjct: 3887 aactcaaccaagccagcaacctcctctggtttgccatatctccct 3843
>ref|NT_079858.2| Oryza sativa (japonica cultivar-group)
Length = 2468003
Score = 133 bits (67), Expect = 3e-028
Identities = 121/139 (87%)
Strand = Plus / Plus
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
||||||||||||||||||||||| ||||| || |||||||| || |||||||| || |||
Sbjct: 1644032 acattgatatttctgcttgcatattccctagctactgttttcgtcaaaccaataacccca 1644091
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || || |||||||||||||||| ||| ||| ||||||||| || |||||
Sbjct: 1644092 gccttggcagcactgtaattagcttggccaatattaccaacaagaccaacaactgatgct 1644151
Query: 529 atgttgataatttttccct 547
|||||||| ||||||||||
Sbjct: 1644152 atgttgatgatttttccct 1644170
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 580 tgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttc 639
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 1644591 tgtgtacagaggaaaacaccagtaagattcaggtcaattacgtcttgccattgtgatttc 1644650
Query: 640 ttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
||||||||||| || ||||||||||| ||||| ||||
Sbjct: 1644651 ttcatcctcattaataatgtgtctcgggtaattcctg 1644687
Score = 117 bits (59), Expect = 2e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 316 cctaacggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcata 375
||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1643856 cctaatgggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatg 1643915
Query: 376 tcagatgcaatgaaccctggtgcaatagcattcac 410
|||||||||||||| || |||||||| ||||||||
Sbjct: 1643916 tcagatgcaatgaaaccaggtgcaattgcattcac 1643950
Score = 109 bits (55), Expect = 4e-021
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct: 1646095 accttgcacccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggca 1646154
Query: 913 cctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgttca 972
|| || |||| ||||||||||||||||| ||| |||||||||| |||| |||||| |||
Sbjct: 1646155 ccggtcacaataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctca 1646214
Query: 973 acagcggcaacatgggtttgcac 995
||||| ||||||||||| |||||
Sbjct: 1646215 acagctgcaacatgggtctgcac 1646237
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 1644926 ctgctttcatcatagaatccacatcggcttcttttgaaacatctcccccgaaggtaatag 1644985
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| ||||||| ||||
Sbjct: 1644986 cctgaccaccacatgcttcgatct 1645009
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 801 ctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 1645752 ctctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggacct 1645807
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 673 cctgcattatttaccagcacatctattgttccccatttatctagagc 719
|||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 1644781 cctgcattgtttaccagcacatcaattgttccccatttatcaagagc 1644827
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 274 aactcgaccaaccctgcaacttcctctggttggccatatctccct 318
||||| ||||| || ||||| |||||||||| |||||||||||||
Sbjct: 1643587 aactcaaccaagccagcaacctcctctggtttgccatatctccct 1643631
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 133 bits (67), Expect = 3e-028
Identities = 121/139 (87%)
Strand = Plus / Plus
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
||||||||||||||||||||||| ||||| || |||||||| || |||||||| || |||
Sbjct: 8048860 acattgatatttctgcttgcatattccctagctactgttttcgtcaaaccaataacccca 8048919
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || || |||||||||||||||| ||| ||| ||||||||| || |||||
Sbjct: 8048920 gccttggcagcactgtaattagcttggccaatattaccaacaagaccaacaactgatgct 8048979
Query: 529 atgttgataatttttccct 547
|||||||| ||||||||||
Sbjct: 8048980 atgttgatgatttttccct 8048998
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 580 tgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttc 639
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 8049419 tgtgtacagaggaaaacaccagtaagattcaggtcaattacgtcttgccattgtgatttc 8049478
Query: 640 ttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
||||||||||| || ||||||||||| ||||| ||||
Sbjct: 8049479 ttcatcctcattaataatgtgtctcgggtaattcctg 8049515
Score = 117 bits (59), Expect = 2e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 316 cctaacggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcata 375
||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 8048684 cctaatgggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatg 8048743
Query: 376 tcagatgcaatgaaccctggtgcaatagcattcac 410
|||||||||||||| || |||||||| ||||||||
Sbjct: 8048744 tcagatgcaatgaaaccaggtgcaattgcattcac 8048778
Score = 109 bits (55), Expect = 4e-021
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct: 8050923 accttgcacccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggca 8050982
Query: 913 cctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgttca 972
|| || |||| ||||||||||||||||| ||| |||||||||| |||| |||||| |||
Sbjct: 8050983 ccggtcacaataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctca 8051042
Query: 973 acagcggcaacatgggtttgcac 995
||||| ||||||||||| |||||
Sbjct: 8051043 acagctgcaacatgggtctgcac 8051065
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 8049754 ctgctttcatcatagaatccacatcggcttcttttgaaacatctcccccgaaggtaatag 8049813
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| ||||||| ||||
Sbjct: 8049814 cctgaccaccacatgcttcgatct 8049837
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 801 ctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 8050580 ctctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggacct 8050635
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 673 cctgcattatttaccagcacatctattgttccccatttatctagagc 719
|||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 8049609 cctgcattgtttaccagcacatcaattgttccccatttatcaagagc 8049655
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 274 aactcgaccaaccctgcaacttcctctggttggccatatctccct 318
||||| ||||| || ||||| |||||||||| |||||||||||||
Sbjct: 8048415 aactcaaccaagccagcaacctcctctggtttgccatatctccct 8048459
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 133 bits (67), Expect = 3e-028
Identities = 121/139 (87%)
Strand = Plus / Plus
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
||||||||||||||||||||||| ||||| || |||||||| || |||||||| || |||
Sbjct: 15396222 acattgatatttctgcttgcatattccctagctactgttttcgtcaaaccaataacccca 15396281
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || || |||||||||||||||| ||| ||| ||||||||| || |||||
Sbjct: 15396282 gccttggcagcactgtaattagcttggccaatattaccaacaagaccaacaactgatgct 15396341
Query: 529 atgttgataatttttccct 547
|||||||| ||||||||||
Sbjct: 15396342 atgttgatgatttttccct 15396360
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 580 tgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttc 639
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 15396781 tgtgtacagaggaaaacaccagtaagattcaggtcaattacgtcttgccattgtgatttc 15396840
Query: 640 ttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
||||||||||| || ||||||||||| ||||| ||||
Sbjct: 15396841 ttcatcctcattaataatgtgtctcgggtaattcctg 15396877
Score = 117 bits (59), Expect = 2e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 316 cctaacggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcata 375
||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 15396046 cctaatgggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatg 15396105
Query: 376 tcagatgcaatgaaccctggtgcaatagcattcac 410
|||||||||||||| || |||||||| ||||||||
Sbjct: 15396106 tcagatgcaatgaaaccaggtgcaattgcattcac 15396140
Score = 109 bits (55), Expect = 4e-021
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct: 15398285 accttgcacccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggca 15398344
Query: 913 cctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgttca 972
|| || |||| ||||||||||||||||| ||| |||||||||| |||| |||||| |||
Sbjct: 15398345 ccggtcacaataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctca 15398404
Query: 973 acagcggcaacatgggtttgcac 995
||||| ||||||||||| |||||
Sbjct: 15398405 acagctgcaacatgggtctgcac 15398427
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 15397116 ctgctttcatcatagaatccacatcggcttcttttgaaacatctcccccgaaggtaatag 15397175
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| ||||||| ||||
Sbjct: 15397176 cctgaccaccacatgcttcgatct 15397199
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 801 ctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 15397942 ctctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggacct 15397997
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 673 cctgcattatttaccagcacatctattgttccccatttatctagagc 719
|||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 15396971 cctgcattgtttaccagcacatcaattgttccccatttatcaagagc 15397017
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 274 aactcgaccaaccctgcaacttcctctggttggccatatctccct 318
||||| ||||| || ||||| |||||||||| |||||||||||||
Sbjct: 15395777 aactcaaccaagccagcaacctcctctggtttgccatatctccct 15395821
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 7135044 ctgctgctgctgcggcggcggcggcggtggcc 7135013
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
complete sequence
Length = 133413
Score = 133 bits (67), Expect = 3e-028
Identities = 121/139 (87%)
Strand = Plus / Plus
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
||||||||||||||||||||||| ||||| || |||||||| || |||||||| || |||
Sbjct: 95667 acattgatatttctgcttgcatattccctagctactgttttcgtcaaaccaataacccca 95726
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || || |||||||||||||||| ||| ||| ||||||||| || |||||
Sbjct: 95727 gccttggcagcactgtaattagcttggccaatattaccaacaagaccaacaactgatgct 95786
Query: 529 atgttgataatttttccct 547
|||||||| ||||||||||
Sbjct: 95787 atgttgatgatttttccct 95805
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 580 tgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttc 639
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 96226 tgtgtacagaggaaaacaccagtaagattcaggtcaattacgtcttgccattgtgatttc 96285
Query: 640 ttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
||||||||||| || ||||||||||| ||||| ||||
Sbjct: 96286 ttcatcctcattaataatgtgtctcgggtaattcctg 96322
Score = 117 bits (59), Expect = 2e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 316 cctaacggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcata 375
||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 95491 cctaatgggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatg 95550
Query: 376 tcagatgcaatgaaccctggtgcaatagcattcac 410
|||||||||||||| || |||||||| ||||||||
Sbjct: 95551 tcagatgcaatgaaaccaggtgcaattgcattcac 95585
Score = 109 bits (55), Expect = 4e-021
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct: 97730 accttgcacccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggca 97789
Query: 913 cctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgttca 972
|| || |||| ||||||||||||||||| ||| |||||||||| |||| |||||| |||
Sbjct: 97790 ccggtcacaataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctca 97849
Query: 973 acagcggcaacatgggtttgcac 995
||||| ||||||||||| |||||
Sbjct: 97850 acagctgcaacatgggtctgcac 97872
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 96561 ctgctttcatcatagaatccacatcggcttcttttgaaacatctcccccgaaggtaatag 96620
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| ||||||| ||||
Sbjct: 96621 cctgaccaccacatgcttcgatct 96644
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 801 ctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 97387 ctctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggacct 97442
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 673 cctgcattatttaccagcacatctattgttccccatttatctagagc 719
|||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 96416 cctgcattgtttaccagcacatcaattgttccccatttatcaagagc 96462
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 274 aactcgaccaaccctgcaacttcctctggttggccatatctccct 318
||||| ||||| || ||||| |||||||||| |||||||||||||
Sbjct: 95222 aactcaaccaagccagcaacctcctctggtttgccatatctccct 95266
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 133 bits (67), Expect = 3e-028
Identities = 121/139 (87%)
Strand = Plus / Plus
Query: 409 acattgatatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactcca 468
||||||||||||||||||||||| ||||| || |||||||| || |||||||| || |||
Sbjct: 18393744 acattgatatttctgcttgcatattccctagctactgttttcgtcaaaccaataacccca 18393803
Query: 469 gccttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgca 528
|||||||| || || |||||||||||||||| ||| ||| ||||||||| || |||||
Sbjct: 18393804 gccttggcagcactgtaattagcttggccaatattaccaacaagaccaacaactgatgct 18393863
Query: 529 atgttgataatttttccct 547
|||||||| ||||||||||
Sbjct: 18393864 atgttgatgatttttccct 18393882
Score = 121 bits (61), Expect = 1e-024
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 580 tgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttc 639
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 18394303 tgtgtacagaggaaaacaccagtaagattcaggtcaattacgtcttgccattgtgatttc 18394362
Query: 640 ttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
||||||||||| || ||||||||||| ||||| ||||
Sbjct: 18394363 ttcatcctcattaataatgtgtctcgggtaattcctg 18394399
Score = 117 bits (59), Expect = 2e-023
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 316 cctaacggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcata 375
||||| || |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 18393568 cctaatgggatggttgacaagattttcttctcaagatcctctccaagttcagcagtcatg 18393627
Query: 376 tcagatgcaatgaaccctggtgcaatagcattcac 410
|||||||||||||| || |||||||| ||||||||
Sbjct: 18393628 tcagatgcaatgaaaccaggtgcaattgcattcac 18393662
Score = 109 bits (55), Expect = 4e-021
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct: 18395807 accttgcacccagcttttccaagagccaatgcagtcgcctttccaatccccctggaggca 18395866
Query: 913 cctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgttca 972
|| || |||| ||||||||||||||||| ||| |||||||||| |||| |||||| |||
Sbjct: 18395867 ccggtcacaataacaactggagcttccaactttgtagcatcttgcacaagtgcttgctca 18395926
Query: 973 acagcggcaacatgggtttgcac 995
||||| ||||||||||| |||||
Sbjct: 18395927 acagctgcaacatgggtctgcac 18395949
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 18394638 ctgctttcatcatagaatccacatcggcttcttttgaaacatctcccccgaaggtaatag 18394697
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| ||||||| ||||
Sbjct: 18394698 cctgaccaccacatgcttcgatct 18394721
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 801 ctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 18395464 ctctttggagacttcttcagcctcttttgaggatcgggcatagttcaccaggacct 18395519
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 673 cctgcattatttaccagcacatctattgttccccatttatctagagc 719
|||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 18394493 cctgcattgtttaccagcacatcaattgttccccatttatcaagagc 18394539
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 274 aactcgaccaaccctgcaacttcctctggttggccatatctccct 318
||||| ||||| || ||||| |||||||||| |||||||||||||
Sbjct: 18393299 aactcaaccaagccagcaacctcctctggtttgccatatctccct 18393343
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 5077803 ctgctgctgctgcggcggcggcggcggtggcc 5077834
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1003_F04
Length = 139563
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 10446 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 10505
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 10506 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 10565
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 10566 ataactcttccct 10578
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 10800 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 10859
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 10860 tcttcattctcagcaacaatgtatcccgtgt 10890
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 11110 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 11169
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 11170 cctgaccaccaaatccttcaatct 11193
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 12010 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 12069
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 12070 tgttcaacagctgcaacatg 12089
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 10692 cctttttcttcttcatcattacttttgtcgcagcctg 10728
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 10066 gcaacttcctctggttcaccatatctccct 10095
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1126_B06
Length = 99637
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 83485 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 83544
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 83545 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 83604
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 83605 ataactcttccct 83617
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 83839 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 83898
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 83899 tcttcattctcagcaacaatgtatcccgtgt 83929
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 84149 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 84208
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 84209 cctgaccaccaaatccttcaatct 84232
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 85049 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 85108
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 85109 tgttcaacagctgcaacatg 85128
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 83731 cctttttcttcttcatcattacttttgtcgcagcctg 83767
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 83105 gcaacttcctctggttcaccatatctccct 83134
>gb|AACV01004412.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004412, whole
genome shotgun sequence
Length = 18930
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 13920 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 13979
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 13980 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 14039
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 14040 ataactcttccct 14052
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 14274 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 14333
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 14334 tcttcattctcagcaacaatgtatcccgtgt 14364
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 14584 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 14643
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 14644 cctgaccaccaaatccttcaatct 14667
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 15484 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 15543
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 15544 tgttcaacagctgcaacatg 15563
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 14166 cctttttcttcttcatcattacttttgtcgcagcctg 14202
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 13540 gcaacttcctctggttcaccatatctccct 13569
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 4011039 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 4011098
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 4011099 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 4011158
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 4011159 ataactcttccct 4011171
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 4011393 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 4011452
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 4011453 tcttcattctcagcaacaatgtatcccgtgt 4011483
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 4011703 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 4011762
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 4011763 cctgaccaccaaatccttcaatct 4011786
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 4012603 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 4012662
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 4012663 tgttcaacagctgcaacatg 4012682
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 4011285 cctttttcttcttcatcattacttttgtcgcagcctg 4011321
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 4010659 gcaacttcctctggttcaccatatctccct 4010688
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 4180646 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 4180705
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 4180706 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 4180765
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 4180766 ataactcttccct 4180778
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 4181000 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 4181059
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 4181060 tcttcattctcagcaacaatgtatcccgtgt 4181090
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 4181310 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 4181369
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 4181370 cctgaccaccaaatccttcaatct 4181393
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 4182210 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 4182269
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 4182270 tgttcaacagctgcaacatg 4182289
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 4180892 cctttttcttcttcatcattacttttgtcgcagcctg 4180928
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 4180266 gcaacttcctctggttcaccatatctccct 4180295
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 17633710 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 17633769
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 17633770 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 17633829
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 17633830 ataactcttccct 17633842
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 17634064 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 17634123
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 17634124 tcttcattctcagcaacaatgtatcccgtgt 17634154
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 17634374 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 17634433
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 17634434 cctgaccaccaaatccttcaatct 17634457
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 17635274 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 17635333
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 17635334 tgttcaacagctgcaacatg 17635353
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 17633956 cctttttcttcttcatcattacttttgtcgcagcctg 17633992
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 17633330 gcaacttcctctggttcaccatatctccct 17633359
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 415 atatttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttg 474
||||||||||||||| | ||||| ||| ||||||||| || ||||| ||| ||||||||
Sbjct: 17948852 atatttctgcttgcaaattccctagcagttgtttttgttaacccaataactgcagccttg 17948911
Query: 475 gctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttg 534
|| || ||||||| ||||||||| |||||||||||| ||||| || ||||| ||||||
Sbjct: 17948912 gcagcagcataattaacttggccaagattgccagtaaggccaacaactgatgctatgttg 17948971
Query: 535 ataatttttccct 547
|||| | ||||||
Sbjct: 17948972 ataactcttccct 17948984
Score = 93.7 bits (47), Expect = 2e-016
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 578 cctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatt 637
||||||| |||||||| || || |||||||| ||||||| ||| ||||||||||||||||
Sbjct: 17949206 cctgtgtgcaaaggaatacgcccgtaagattaagatcaactacatcttgccactgagatt 17949265
Query: 638 tcttcatcctcatcaacaatgtgtctcgtgt 668
||||||| |||| ||||||||| || |||||
Sbjct: 17949266 tcttcattctcagcaacaatgtatcccgtgt 17949296
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 719 ctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatag 778
||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| || |
Sbjct: 17949516 ctgctttaatcatagaatccacatcggcttcattagaaacatctcctcggaaggtaattg 17949575
Query: 779 cctcaccaccagatgcttcaatct 802
||| ||||||| || |||||||||
Sbjct: 17949576 cctgaccaccaaatccttcaatct 17949599
Score = 52.0 bits (26), Expect = 7e-004
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttgg---tagcatcttttacaattgct 966
|||||||||||||||||||||||||| || || | ||||||||| ||| | ||||
Sbjct: 17950416 gcacctgtaacaacaacaactggagcctctgactgtgcaatagcatcttgtaccactgct 17950475
Query: 967 tgttcaacagcggcaacatg 986
||||||||||| ||||||||
Sbjct: 17950476 tgttcaacagctgcaacatg 17950495
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 cctttctctttttcatcattacttttgttgcagcctg 581
||||| |||| ||||||||||||||||| ||||||||
Sbjct: 17949098 cctttttcttcttcatcattacttttgtcgcagcctg 17949134
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 289 gcaacttcctctggttggccatatctccct 318
|||||||||||||||| ||||||||||||
Sbjct: 17948472 gcaacttcctctggttcaccatatctccct 17948501
>dbj|AK109188.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A12, full
insert sequence
Length = 1038
Score = 58.0 bits (29), Expect = 1e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 639 cttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatctat 698
|||||||| ||||| || || ||||| ||| ||||||||||| || |||||||| ||||
Sbjct: 516 cttcatccgcatcagcagtgcgtctcttgtgatccctgcattgttcaccagcacgtctag 457
Query: 699 tgttcccca 707
|||||||||
Sbjct: 456 tgttcccca 448
>gb|CB656200.1|CB656200 OSJNEc10E07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10E07 5', mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 348 ctgctgctgctgcggcggcggcggcggtggcc 317
>gb|AACV01008834.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008834, whole
genome shotgun sequence
Length = 38497
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 12791 ctgctgctgctgcggcggcggcggcggtggcc 12760
>ref|XM_474637.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1674
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 544 ctgctgctgctgcggcggcggcggcggtggcc 513
>ref|NT_107202.1| Oryza sativa (japonica cultivar-group)
Length = 327802
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 190210 ctgctgctgctgcggcggcggcggcggtggcc 190241
>gb|CH401188.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000025
genomic scaffold, whole genome shotgun sequence
Length = 1620156
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 212219 ctgctgctgctgcggcggcggcggcggtggcc 212250
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
complete sequence
Length = 144144
Score = 48.1 bits (24), Expect = 0.012
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1118 ctgctgctgctacggtggcggcggcggtggcc 1149
||||||||||| ||| ||||||||||||||||
Sbjct: 54076 ctgctgctgctgcggcggcggcggcggtggcc 54107
>gb|AU173137.1|AU173137 AU173137 Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R1281, mRNA sequence
Length = 436
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 194 gctacggtggcggcggcggtggc 216
>gb|AU172481.2|AU172481 AU172481 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1541, mRNA sequence
Length = 410
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 85 cccggcgggaggcgtcggcggcgccggcgcg 55
>dbj|AP005151.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone
OSJNBb0040P11, *** SEQUENCING IN PROGRESS ***
Length = 133597
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 48361 gctacggtggcggcggcggtggc 48339
>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:B1015H11
Length = 156897
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 25116 gctacggtggcggcggcggtggc 25094
>dbj|AK120510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H20, full
insert sequence
Length = 2353
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 544 cccggcgggaggcgtcggcggcgccggcgcg 514
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1097D05
Length = 144879
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 116908 cccggcgggaggcgtcggcggcgccggcgcg 116878
>gb|AACV01001670.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001670, whole
genome shotgun sequence
Length = 13274
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 629 cccggcgggaggcgtcggcggcgccggcgcg 599
>gb|AACV01017774.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017774, whole
genome shotgun sequence
Length = 26020
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 8349 gctacggtggcggcggcggtggc 8371
>gb|AACV01022113.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022113, whole
genome shotgun sequence
Length = 91320
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggcc 1089
|||||||||||||||||||||||
Sbjct: 65872 cccggcgggaggcggcggcggcc 65850
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 22679888 cccggcgggaggcgtcggcggcgccggcgcg 22679858
>ref|XM_463361.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1656
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 349 cccggcgggaggcgtcggcggcgccggcgcg 319
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 5598120 cccggcgggaggcgtcggcggcgccggcgcg 5598090
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 9395162 gctacggtggcggcggcggtggc 9395140
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||||||| ||| ||||||||||||||
Sbjct: 14520837 ctgctgctgctgcggcggcggcggcggtgg 14520808
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggcc 1089
|||||||||||||||||||||||
Sbjct: 9620936 cccggcgggaggcggcggcggcc 9620914
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 1465023 gctacggtggcggcggcggtggc 1465001
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||||||| ||| ||||||||||||||
Sbjct: 6072481 ctgctgctgctgcggcggcggcggcggtgg 6072452
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 5501715 cccggcgggaggcgtcggcggcgccggcgcg 5501685
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggcc 1089
|||||||||||||||||||||||
Sbjct: 20486730 cccggcgggaggcggcggcggcc 20486708
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 9067029 gctacggtggcggcggcggtggc 9067007
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||||||| ||| ||||||||||||||
Sbjct: 13674487 ctgctgctgctgcggcggcggcggcggtgg 13674458
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 22126838 cccggcgggaggcgtcggcggcgccggcgcg 22126808
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.046
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1067 cccggcgggaggcggcggcggccccggcgcg 1097
|||||||||||||| ||||||| ||||||||
Sbjct: 22601171 cccggcgggaggcgtcggcggcgccggcgcg 22601141
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 46.1 bits (23), Expect = 0.046
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1126 gctacggtggcggcggcggtggc 1148
|||||||||||||||||||||||
Sbjct: 9627636 gctacggtggcggcggcggtggc 9627614
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||||||| ||| ||||||||||||||
Sbjct: 14758924 ctgctgctgctgcggcggcggcggcggtgg 14758895
>dbj|AK067770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120H22, full
insert sequence
Length = 2391
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1120 gctgctgctacggtggcggcggcggt 1145
||||||||||||| ||||||||||||
Sbjct: 276 gctgctgctacggcggcggcggcggt 251
>dbj|AK103806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033146N17, full
insert sequence
Length = 1613
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||||||| ||| ||||||||||||||
Sbjct: 102 ctgctgctgctgcggcggcggcggcggtgg 131
>dbj|AK108629.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E12, full
insert sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||| || |||||||||||||||||||
Sbjct: 163 ctgctgcggcaacggtggcggcggcggtgg 192
>dbj|AP004256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1224_G08
Length = 113496
Score = 44.1 bits (22), Expect = 0.18
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcggtgg 1147
||||||||||| ||| ||||||||||||||
Sbjct: 103503 ctgctgctgctgcggcggcggcggcggtgg 103474
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
complete sequence
Length = 138209
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1120 gctgctgctacggtggcggcggcggt 1145
||||||||||||| ||||||||||||
Sbjct: 41268 gctgctgctacggcggcggcggcggt 41243
>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0503D09
Length = 144443
Score = 44.1 bits (22), Expect = 0.18
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1119 tgctgctgctacggtggcggcggcgg 1144
|||||||||||||| |||||||||||
Sbjct: 118590 tgctgctgctacggcggcggcggcgg 118615
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,444,704
Number of Sequences: 438736
Number of extensions: 3444704
Number of successful extensions: 62261
Number of sequences better than 0.5: 72
Number of HSP's better than 0.5 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58633
Number of HSP's gapped (non-prelim): 3623
length of query: 1252
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1231
effective length of database: 2,791,206,460
effective search space: 3435975152260
effective search space used: 3435975152260
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)