BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4005867.2.1
(1967 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA... 1199 0.0
gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) c... 1199 0.0
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 1199 0.0
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 1199 0.0
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 1199 0.0
emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromoso... 1199 0.0
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 1199 0.0
ref|XM_472740.1| Oryza sativa (japonica cultivar-group), p... 1195 0.0
gb|C98771.1|C98771 C98771 Rice panicle at flowering stage O... 527 e-147
dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA... 208 8e-051
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 208 8e-051
ref|XM_474065.1| Oryza sativa (japonica cultivar-group), p... 208 8e-051
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 208 8e-051
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 208 8e-051
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 208 8e-051
gb|AZ128741.1|AZ128741 OSJNBb0099L14r CUGI Rice BAC Library... 186 3e-044
dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA... 113 4e-022
dbj|AP005551.3| Oryza sativa (japonica cultivar-group) geno... 113 4e-022
gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) c... 113 4e-022
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 113 4e-022
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 113 4e-022
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 113 4e-022
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 113 4e-022
dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA... 105 9e-020
dbj|AP003798.3| Oryza sativa (japonica cultivar-group) geno... 105 9e-020
gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) c... 105 9e-020
ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA 105 9e-020
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 105 9e-020
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 105 9e-020
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 105 9e-020
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 105 9e-020
gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonic... 92 1e-015
dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA... 92 1e-015
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 92 1e-015
gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) c... 92 1e-015
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 92 1e-015
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 92 1e-015
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 92 1e-015
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 92 1e-015
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 92 1e-015
dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA... 90 5e-015
gb|AACV01018600.1| Oryza sativa (japonica cultivar-group) c... 90 5e-015
ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA 90 5e-015
dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA... 88 2e-014
gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) c... 88 2e-014
ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-014
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 88 2e-014
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 88 2e-014
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 88 2e-014
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 88 2e-014
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 88 2e-014
dbj|AG211559.1| Oryza sativa (japonica cultivar-group) DNA,... 78 2e-011
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 78 2e-011
gb|AACV01022444.1| Oryza sativa (japonica cultivar-group) c... 78 2e-011
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 78 2e-011
gb|AC123897.3| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
gb|AC128643.3| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA... 76 8e-011
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 76 8e-011
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 76 8e-011
gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) c... 76 8e-011
ref|XM_475113.1| Oryza sativa (japonica cultivar-group), p... 76 8e-011
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 76 8e-011
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 76 8e-011
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 76 8e-011
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 76 8e-011
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 74 3e-010
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 74 3e-010
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 74 3e-010
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 74 3e-010
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 74 3e-010
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 74 3e-010
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 74 3e-010
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 74 3e-010
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 74 3e-010
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 74 3e-010
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 74 3e-010
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 74 3e-010
gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) c... 70 5e-009
ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Oz... 70 5e-009
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 70 5e-009
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 70 5e-009
dbj|AK107006.1| Oryza sativa (japonica cultivar-group) cDNA... 68 2e-008
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 68 2e-008
ref|NM_183700.1| Oryza sativa (japonica cultivar-group), p... 68 2e-008
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 68 2e-008
dbj|AP000570.1| Oryza sativa (japonica cultivar-group) geno... 66 8e-008
gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) c... 66 8e-008
ref|NM_187890.1| Oryza sativa (japonica cultivar-group), Oz... 66 8e-008
dbj|AP000492.1| Oryza sativa (japonica cultivar-group) geno... 66 8e-008
gb|DU134101.1|DU134101 UCDRGT3282_5.1 UCD RGT Rice Insertio... 64 3e-007
dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 64 3e-007
ref|NM_183704.1| Oryza sativa (japonica cultivar-group), p... 64 3e-007
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|AACV01000866.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
gb|AU076010.1|AU076010 AU076010 Rice callus Oryza sativa (j... 58 2e-005
dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA... 56 8e-005
dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA... 56 8e-005
dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA... 56 8e-005
dbj|AP004343.2| Oryza sativa (japonica cultivar-group) geno... 56 8e-005
dbj|AP006268.4| Oryza sativa (japonica cultivar-group) geno... 56 8e-005
gb|AACV01006830.1| Oryza sativa (japonica cultivar-group) c... 56 8e-005
gb|AACV01017005.1| Oryza sativa (japonica cultivar-group) c... 56 8e-005
ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-005
ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-005
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 56 8e-005
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 56 8e-005
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 56 8e-005
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 54 3e-004
gb|CV723475.1|CV723475 root--03-L02.g1 Rice root lambda pha... 54 3e-004
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 54 3e-004
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 54 3e-004
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 54 3e-004
gb|C72326.2|C72326 C72326 Rice panicle at flowering stage O... 52 0.001
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|AACV01011130.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 52 0.001
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP005710.1| Oryza sativa (japonica cultivar-group) chro... 50 0.005
gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01020493.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 50 0.005
dbj|AP005862.2| Oryza sativa (japonica cultivar-group) geno... 50 0.005
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|AQ864513.1|AQ864513 nbeb0023M19f CUGI Rice BAC Library (... 48 0.018
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 48 0.018
gb|AACV01001148.1| Oryza sativa (japonica cultivar-group) c... 48 0.018
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 48 0.018
gb|AQ290006.1|AQ290006 nbxb0036M09f CUGI Rice BAC Library O... 46 0.073
gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (j... 46 0.073
dbj|AP004021.1| Oryza sativa (japonica cultivar-group) chro... 46 0.073
dbj|AK105110.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.073
dbj|AK106869.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.073
dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.073
dbj|AP004849.3| Oryza sativa (japonica cultivar-group) geno... 46 0.073
dbj|AP004168.3| Oryza sativa (japonica cultivar-group) geno... 46 0.073
dbj|AP005285.2| Oryza sativa (japonica cultivar-group) geno... 46 0.073
gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 ... 46 0.073
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 46 0.073
dbj|AP006162.2| Oryza sativa (japonica cultivar-group) geno... 46 0.073
gb|AACV01004424.1| Oryza sativa (japonica cultivar-group) c... 46 0.073
gb|AACV01007522.1| Oryza sativa (japonica cultivar-group) c... 46 0.073
gb|AACV01020566.1| Oryza sativa (japonica cultivar-group) c... 46 0.073
ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.073
ref|XM_468128.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.073
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 46 0.073
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 46 0.073
ref|NT_107185.1| Oryza sativa (japonica cultivar-group) 46 0.073
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.073
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.073
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.073
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.073
gb|AC120535.5| Oryza sativa (japonica cultivar-group) chrom... 46 0.073
gb|AU172636.1|AU172636 AU172636 Rice panicle at flowering s... 44 0.29
gb|CB685685.1|CB685685 OSJNEf16F05.f OSJNEf Oryza sativa (j... 44 0.29
dbj|AP004682.1| Oryza sativa (japonica cultivar-group) chro... 44 0.29
dbj|AP003510.3| Oryza sativa (japonica cultivar-group) geno... 44 0.29
gb|AC097174.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
gb|AACV01003214.1| Oryza sativa (japonica cultivar-group) c... 44 0.29
gb|AACV01010293.1| Oryza sativa (japonica cultivar-group) c... 44 0.29
gb|AACV01011046.1| Oryza sativa (japonica cultivar-group) c... 44 0.29
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.29
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 44 0.29
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 44 0.29
dbj|AP004121.3| Oryza sativa (japonica cultivar-group) geno... 44 0.29
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 44 0.29
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromoso... 44 0.29
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.29
>dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P03, full
insert sequence
Length = 2002
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Plus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 778 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 837
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 838 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 897
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 898 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 957
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 1017
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 1077
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 1078 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 1137
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1138 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 1197
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 1198 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 1257
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 1258 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 1317
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1318 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 1377
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 1378 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 1437
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1438 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 1497
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 1498 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 1557
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 1558 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 1617
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 1618 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 1677
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 1678 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 1726
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Plus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 51 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 110
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 111 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 169
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 170 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 229
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 230 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 289
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 290 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 349
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 350 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 409
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 410 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 469
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 470 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 529
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 530 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 589
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 590 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 649
Query: 636 catgttca 643
||||||||
Sbjct: 650 catgttca 657
>gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009904, whole
genome shotgun sequence
Length = 51710
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Minus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 37452 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 37393
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 37392 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 37333
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 37332 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 37273
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37272 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 37213
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 37212 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 37153
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 37152 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 37093
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 37092 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 37033
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 37032 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 36973
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 36972 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 36913
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 36912 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 36853
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 36852 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 36793
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 36792 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 36733
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 36732 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 36673
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 36672 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 36613
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 36612 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 36553
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 36552 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 36504
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 38179 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 38120
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 38119 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 38061
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 38060 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 38001
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 38000 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 37941
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 37940 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 37881
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 37880 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 37821
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 37820 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 37761
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 37760 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 37701
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 37700 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 37641
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 37640 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 37581
Query: 636 catgttca 643
||||||||
Sbjct: 37580 catgttca 37573
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Minus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 490058 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 489999
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 489998 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 489939
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 489938 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 489879
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489878 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 489819
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 489818 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 489759
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 489758 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 489699
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 489698 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 489639
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 489638 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 489579
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 489578 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 489519
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 489518 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 489459
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 489458 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 489399
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 489398 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 489339
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 489338 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 489279
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 489278 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 489219
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 489218 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 489159
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 489158 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 489110
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 490785 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 490726
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 490725 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 490667
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 490666 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 490607
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 490606 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 490547
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 490546 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 490487
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 490486 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 490427
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 490426 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 490367
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 490366 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 490307
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 490306 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 490247
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 490246 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 490187
Query: 636 catgttca 643
||||||||
Sbjct: 490186 catgttca 490179
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027
genomic scaffold, whole genome shotgun sequence
Length = 13167135
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Minus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 765478 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 765419
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 765418 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 765359
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 765358 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 765299
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765298 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 765239
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 765238 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 765179
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 765178 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 765119
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 765118 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 765059
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 765058 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 764999
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 764998 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 764939
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 764938 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 764879
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 764878 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 764819
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 764818 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 764759
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 764758 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 764699
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 764698 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 764639
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 764638 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 764579
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 764578 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 764530
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 766205 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 766146
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 766145 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 766087
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 766086 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 766027
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 766026 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 765967
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 765966 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 765907
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 765906 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 765847
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 765846 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 765787
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 765786 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 765727
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 765726 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 765667
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 765666 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 765607
Query: 636 catgttca 643
||||||||
Sbjct: 765606 catgttca 765599
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 10345876 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 10345935
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 10345936 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 10345995
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 10345996 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 10346055
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 10346056 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 10346115
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 10346116 gtgacggcgcacgggcgcaccgaccccaacatg 10346148
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 10346335 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 10346394
Query: 1567 agggt 1571
|||||
Sbjct: 10346395 agggt 10346399
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 10344037 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 10344084
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 10345640 caacatcttcatgtacggcgacgg 10345663
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 10343953 gcgtcatgacgtacatctacacctgcgccgacggcttcg 10343991
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 10345580 cgtcatctacgtgaaggccggc 10345601
Score = 44.1 bits (22), Expect = 0.29
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1746 cacacgctcgcgcgcgcgcacacaca 1771
||||||| ||||||||||||||||||
Sbjct: 6056150 cacacgcgcgcgcgcgcgcacacaca 6056175
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Minus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 19909577 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 19909518
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 19909517 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 19909458
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19909457 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 19909398
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19909397 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 19909338
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 19909337 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 19909278
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 19909277 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 19909218
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 19909217 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 19909158
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 19909157 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 19909098
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 19909097 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 19909038
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 19909037 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 19908978
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 19908977 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 19908918
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19908917 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 19908858
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 19908857 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 19908798
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 19908797 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 19908738
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 19908737 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 19908678
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 19908677 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 19908629
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 19910304 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 19910245
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 19910244 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 19910186
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 19910185 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 19910126
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 19910125 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 19910066
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 19910065 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 19910006
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 19910005 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 19909946
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 19909945 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 19909886
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 19909885 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 19909826
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 19909825 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 19909766
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 19909765 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 19909706
Query: 636 catgttca 643
||||||||
Sbjct: 19909705 catgttca 19909698
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 29489975 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 29490034
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 29490035 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 29490094
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 29490095 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 29490154
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 29490155 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 29490214
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 29490215 gtgacggcgcacgggcgcaccgaccccaacatg 29490247
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 29490434 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 29490493
Query: 1567 agggt 1571
|||||
Sbjct: 29490494 agggt 29490498
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 29488136 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 29488183
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1744 cacacacgctcgcgcgcgcgcacacacat 1772
||||||||| |||||||||||||||||||
Sbjct: 17560845 cacacacgcgcgcgcgcgcgcacacacat 17560817
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 29489739 caacatcttcatgtacggcgacgg 29489762
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 29488052 gcgtcatgacgtacatctacacctgcgccgacggcttcg 29488090
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 29489679 cgtcatctacgtgaaggccggc 29489700
Score = 44.1 bits (22), Expect = 0.29
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1746 cacacgctcgcgcgcgcgcacacaca 1771
||||||| ||||||||||||||||||
Sbjct: 25200249 cacacgcgcgcgcgcgcgcacacaca 25200274
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
complete sequence
Length = 138969
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Minus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 95080 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 95021
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 95020 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 94961
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 94960 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 94901
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94900 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 94841
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 94840 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 94781
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 94780 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 94721
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 94720 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 94661
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 94660 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 94601
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 94600 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 94541
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 94540 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 94481
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 94480 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 94421
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 94420 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 94361
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 94360 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 94301
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 94300 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 94241
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 94240 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 94181
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 94180 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 94132
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 95807 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 95748
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 95747 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 95689
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 95688 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 95629
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 95628 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 95569
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 95568 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 95509
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 95508 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 95449
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 95448 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 95389
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 95388 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 95329
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 95328 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 95269
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 95268 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 95209
Query: 636 catgttca 643
||||||||
Sbjct: 95208 catgttca 95201
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 1199 bits (605), Expect = 0.0
Identities = 863/949 (90%)
Strand = Plus / Minus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 22886305 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 22886246
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 22886245 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 22886186
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22886185 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 22886126
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22886125 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 22886066
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 22886065 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 22886006
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 22886005 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 22885946
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 22885945 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 22885886
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 22885885 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 22885826
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 22885825 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 22885766
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 22885765 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 22885706
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 22885705 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 22885646
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 22885645 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 22885586
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 22885585 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 22885526
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 22885525 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 22885466
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 22885465 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 22885406
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaaag 1700
||||||||| ||||||| |||||||| | || || |||||| |||||||
Sbjct: 22885405 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaaag 22885357
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 22887032 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 22886973
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 22886972 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 22886914
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 22886913 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 22886854
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 22886853 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 22886794
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 22886793 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 22886734
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 22886733 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 22886674
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 22886673 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 22886614
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 22886613 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 22886554
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 22886553 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 22886494
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 22886493 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 22886434
Query: 636 catgttca 643
||||||||
Sbjct: 22886433 catgttca 22886426
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 32662111 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 32662170
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 32662171 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 32662230
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 32662231 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 32662290
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 32662291 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 32662350
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 32662351 gtgacggcgcacgggcgcaccgaccccaacatg 32662383
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 32662570 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 32662629
Query: 1567 agggt 1571
|||||
Sbjct: 32662630 agggt 32662634
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 32660272 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 32660319
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 32661875 caacatcttcatgtacggcgacgg 32661898
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 32660188 gcgtcatgacgtacatctacacctgcgccgacggcttcg 32660226
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 32661815 cgtcatctacgtgaaggccggc 32661836
Score = 44.1 bits (22), Expect = 0.29
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1746 cacacgctcgcgcgcgcgcacacaca 1771
||||||| ||||||||||||||||||
Sbjct: 28237976 cacacgcgcgcgcgcgcgcacacaca 28238001
>ref|XM_472740.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1707
Score = 1195 bits (603), Expect = 0.0
Identities = 861/947 (90%)
Strand = Plus / Plus
Query: 752 agccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatccagcaggccg 811
|||| |||||| | |||||| ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 761 agcccaacgcggtggtggcccaggacggcagcggccagttcaagaccatccaggaggccg 820
Query: 812 tggacgccgtgcccaaaggccatcaggggaggtacgtcatctacgtgaaggccggcctct 871
|| || | ||||||| ||||| ||||| |||||||||||||||||||||||||||| |
Sbjct: 821 tgaacagcatgcccaagggccaccagggccggtacgtcatctacgtgaaggccggcctgt 880
Query: 872 acgacgagatcgtcatggtccccaaggacaaggtcaacatcttcatgtacggcgacgggc 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 881 acgacgagatcgtcatggtccccaaggacaaggtgaacatcttcatgtacggcgacgggc 940
Query: 932 ctaagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 991
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ccaagcgcagccgcgtcaccggccgcaagagcttcgccgacggcatcaccaccatgaaga 1000
Query: 992 ccgccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaaca 1051
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1001 ccgccaccttctccgtcgaggcggccgggttcatctgcaagaacatggggttccacaaca 1060
Query: 1052 cggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgt 1111
| |||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
Sbjct: 1061 ccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaacggcgacctcggggcct 1120
Query: 1112 tctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagt 1171
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1121 tctacaactgccggttcgacgcgttccaggacaccctgtacgtgcacgcccggcgccagt 1180
Query: 1172 tcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcgg 1231
|||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
Sbjct: 1181 tcttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactccgccgccg 1240
Query: 1232 tgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtga 1291
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 1241 tcttccagaactgcctcatcatcacccgccgccccatggacaaccagcagaactcggtga 1300
Query: 1292 cggcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcc 1351
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1301 cggcgcacggccgcaccgaccccaacatgaagtccggcctcgtcatccagaactgccgcc 1360
Query: 1352 tggtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcc 1411
| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||
Sbjct: 1361 tcgtgcccgaccagaagctcttcccggacaggttcaagatcccctcctacctcggccgcc 1420
Query: 1412 cctggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagc 1471
| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1421 catggaaggagtactcccgcctcgtcatcatggagagcaccatcgccgacttcatcaagc 1480
Query: 1472 cagaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagt 1531
| ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 1481 cggagggctacatgccatggaacggcgaattcgcgctcaacacgctctactacgccgagt 1540
Query: 1532 acaacaaccgcgggcccggcgccggcaccagcaagagggtcaactggcccggcttccacg 1591
|||||||||||| ||||||||||||||||||||| | ||||||||| || |||| ||
Sbjct: 1541 tcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaactggaaggggttccgcg 1600
Query: 1592 tcatcggacggaaggaggccgagccgttcaccgccgggccgttcatcgacggcgccatgt 1651
||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 1601 tcatcggccagaaggaggccgagcagttcaccgccgggccgttcgtcgacggcgggacct 1660
Query: 1652 ggctcaagtacaccggcgcgccgcacatacttggtttcaagttctaa 1698
||||||||| ||||||| |||||||| | || || |||||| |||||
Sbjct: 1661 ggctcaagttcaccggcacgccgcacttcctcggcttcaaggtctaa 1707
Score = 579 bits (292), Expect = e-162
Identities = 531/608 (87%), Gaps = 2/608 (0%)
Strand = Plus / Plus
Query: 37 gcgatcctcgtcgtggcggtggtcgtcggtgtggtcgccaccgtcacccgctccggcaag 96
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 34 gcgatcctcgtcgtcgcggtcgtcgtcggcgtggtcgccaccgtcacccgctccggcaac 93
Query: 97 aaggccggcgacaacttcacggtcccgggggaggcttcccttgccaacgtccggcaagtc 156
|||||||| ||||||||||| |||||||||||||| ||| |||| | |||||||||||
Sbjct: 94 aaggccggggacaacttcaccgtcccgggggaggccaacctcgccacc-tccggcaagtc 152
Query: 157 ggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaagacgttgtccca 216
||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 153 cgtcgagtccctgtgcgcgcccacgctgtacaaggagtcgtgcgagaagacgctcaccac 212
Query: 217 ggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggccaaggtggcgct 276
|||||||| |||||||||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 213 ggccaccagtggcaccgagaaccccaaggaggtgttctctaccgtcgccaagtcggcgct 272
Query: 277 ggagtcggtccagacggcggtcgagcagtccaagtcgatcggcgaggccaaggc-agcga 335
|||||| || || ||||||| ||| |||| ||| |||||||||| |||||| | |||||
Sbjct: 273 cgagtcgatcaagtcggcggtggagaagtcgaaggcgatcggcgaagccaagacgagcga 332
Query: 336 ctccatgaccgagagcgcgcgcgaggactgcaagaagctcctggaggacgctgccgacga 395
| |||||| |||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct: 333 cagcatgacggagagcgcgcgcgaggactgcaaggccctcctggaggactccgtggacga 392
Query: 396 cctgaggggcatgctcgagatggccggcggtgacatcaaggtgctgttcagtcggtccga 455
||| ||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct: 393 cctcaggggcatggtcgagatggccggcggcgacgtcaaggtgctgttcagccgctccga 452
Query: 456 cgacctcgagacctggctcacgggcgtcatgacgttcatggacacctgcgtcgacggctt 515
|||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||
Sbjct: 453 cgacctcgagcactggctcaccggcgtcatgacattcatggacacctgcgccgacgggtt 512
Query: 516 cgtcgacgagaagctcaaggccgacatgcactccgtcgtgcgcaacgccaccgagctcag 575
|| |||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 513 cgccgacgagaagctcaaggccgacatgcacagtgtgctgcgcaacgccagcgagctcag 572
Query: 576 cagcaacgcgctggccatcaccaacagcctcggcgggatcctgaagaagatggacctcgg 635
|||||||||||| ||||||||||||| |||||||| ||| | |||||| | |||||||
Sbjct: 573 cagcaacgcgctcgccatcaccaacaccctcggcgccatcttcaagaagctcgacctcga 632
Query: 636 catgttca 643
||||||||
Sbjct: 633 catgttca 640
>gb|C98771.1|C98771 C98771 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3080_1A, mRNA sequence
Length = 461
Score = 527 bits (266), Expect = e-147
Identities = 407/446 (91%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 1028 gcaagaacatggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctcc 1087
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 1 gcaagaacatggggttccacaacaccgccggcgcgga-cggcaccaggcggtggcgctgc 59
Query: 1088 gggtgcagggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgc 1147
| | | || ||||||| ||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 60 gcatcaacggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccc 119
Query: 1148 tgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgact 1207
||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 120 tgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgact 179
Query: 1208 tcatcttcggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggccca 1267
|||||||||||||||| || || || ||||||||||||||||||||||| || || ||||
Sbjct: 180 tcatcttcggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgcccca 239
Query: 1268 tggacaaccagcagaactcggtgacggcgcacgggcgcaccgaccccaacatgaagtccg 1327
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 240 tggacaaccagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccg 299
Query: 1328 ggctcgtcatccagaactgccgcctggtgcccgaccagaagctgttccc-ggaccgcttc 1386
| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||| | |||
Sbjct: 300 gcctcgtcatccagaactgccgcctcgtgcccgaccagaagctcttcccgggacaggttc 359
Query: 1387 aagatcccctcgtacct-gggccgcccctggaaggagt-tctcgcgcctcgtca-tcatg 1443
||||||||||| ||||| ||||||||| |||||||||| || ||| | |||||| |||||
Sbjct: 360 aagatcccctcctacctcgggccgcccatggaaggagtatcccgc-cttcgtcattcatg 418
Query: 1444 gagagcaccatcgccgacttcgtcaa 1469
||||||||||||||||||||| ||||
Sbjct: 419 gagagcaccatcgccgacttcatcaa 444
>dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061N09, full
insert sequence
Length = 3236
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 2306 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 2365
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 2366 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 2425
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 2426 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 2485
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 2486 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 2545
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 2546 gtgacggcgcacgggcgcaccgaccccaacatg 2578
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 2765 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 2824
Query: 1567 agggt 1571
|||||
Sbjct: 2825 agggt 2829
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 561 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 608
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 2164 caacatcttcatgtacggcgacgg 2187
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 477 gcgtcatgacgtacatctacacctgcgccgacggcttcg 515
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 2104 cgtcatctacgtgaaggccggc 2125
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 55005 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 55064
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 55065 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 55124
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 55125 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 55184
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 55185 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 55244
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 55245 gtgacggcgcacgggcgcaccgaccccaacatg 55277
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 55464 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 55523
Query: 1567 agggt 1571
|||||
Sbjct: 55524 agggt 55528
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 53166 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 53213
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 54769 caacatcttcatgtacggcgacgg 54792
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 53082 gcgtcatgacgtacatctacacctgcgccgacggcttcg 53120
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 54709 cgtcatctacgtgaaggccggc 54730
>ref|XM_474065.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2916
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 2266 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 2325
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 2326 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 2385
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 2386 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 2445
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 2446 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 2505
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 2506 gtgacggcgcacgggcgcaccgaccccaacatg 2538
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 2725 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 2784
Query: 1567 agggt 1571
|||||
Sbjct: 2785 agggt 2789
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 521 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 568
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 2124 caacatcttcatgtacggcgacgg 2147
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 437 gcgtcatgacgtacatctacacctgcgccgacggcttcg 475
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 2064 cgtcatctacgtgaaggccggc 2085
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 57132 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 57191
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 57192 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 57251
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 57252 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 57311
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 57312 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 57371
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 57372 gtgacggcgcacgggcgcaccgaccccaacatg 57404
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 57591 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 57650
Query: 1567 agggt 1571
|||||
Sbjct: 57651 agggt 57655
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 55293 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 55340
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 56896 caacatcttcatgtacggcgacgg 56919
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 55209 gcgtcatgacgtacatctacacctgcgccgacggcttcg 55247
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 56836 cgtcatctacgtgaaggccggc 56857
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 21546 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 21605
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 21606 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 21665
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 21666 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 21725
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 21726 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 21785
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 21786 gtgacggcgcacgggcgcaccgaccccaacatg 21818
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 22005 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 22064
Query: 1567 agggt 1571
|||||
Sbjct: 22065 agggt 22069
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 19707 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 19754
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 21310 caacatcttcatgtacggcgacgg 21333
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 19623 gcgtcatgacgtacatctacacctgcgccgacggcttcg 19661
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 21250 cgtcatctacgtgaaggccggc 21271
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 208 bits (105), Expect = 8e-051
Identities = 231/273 (84%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcg 1107
|||||||| || ||||| ||||||||||||||||||| | |||||||||||| | ||
Sbjct: 57132 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 57191
Query: 1108 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcgg 1167
| ||||| ||||||| |||||| | || |||||||||||||||||||||||| ||
Sbjct: 57192 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 57251
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||||||| ||||||| ||| | || |||||||||| |||||||||||||||||||
Sbjct: 57252 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 57311
Query: 1228 gcggtgttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcg 1287
||||||||||||| ||||||||| | |||| ||| |||||||||||| |||| |
Sbjct: 57312 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 57371
Query: 1288 gtgacggcgcacgggcgcaccgaccccaacatg 1320
|||||||||||||||||||||||||||||||||
Sbjct: 57372 gtgacggcgcacgggcgcaccgaccccaacatg 57404
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 57591 ctcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaag 57650
Query: 1567 agggt 1571
|||||
Sbjct: 57651 agggt 57655
Score = 63.9 bits (32), Expect = 3e-007
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 563 ccaccgagctcagcagcaacgcgctggccatcaccaacagcctcggcg 610
|||||||||| |||||||||||||| ||||||| || |||||||||||
Sbjct: 55293 ccaccgagctgagcagcaacgcgctcgccatcatcaccagcctcggcg 55340
Score = 48.1 bits (24), Expect = 0.018
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgg 929
||||||||||||||||||||||||
Sbjct: 56896 caacatcttcatgtacggcgacgg 56919
Score = 46.1 bits (23), Expect = 0.073
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 479 gcgtcatgacgttcatggacacctgcgtcgacggcttcg 517
|||||||||||| ||| ||||||||| |||||||||||
Sbjct: 55209 gcgtcatgacgtacatctacacctgcgccgacggcttcg 55247
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 846 cgtcatctacgtgaaggccggc 867
||||||||||||||||||||||
Sbjct: 56836 cgtcatctacgtgaaggccggc 56857
>gb|AZ128741.1|AZ128741 OSJNBb0099L14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0099L14r, DNA
sequence
Length = 909
Score = 186 bits (94), Expect = 3e-044
Identities = 169/194 (87%)
Strand = Plus / Plus
Query: 1507 ctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaag 1566
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 2 ctcaacacgctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaag 61
Query: 1567 agggtcaactggcccggcttccacgtcatcggacggaaggaggccgagccgttcaccgcc 1626
| ||||||||| || |||| ||||||||| | |||||||||||||| ||||||||||
Sbjct: 62 cgcgtcaactggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgcc 121
Query: 1627 gggccgttcatcgacggcgccatgtggctcaagtacaccggcgcgccgcacatacttggt 1686
||||||||| ||||||||| | |||||||||| ||||||| |||||||| | || ||
Sbjct: 122 gggccgttcgtcgacggcgggacctggctcaagttcaccggcacgccgcacttcctcggc 181
Query: 1687 ttcaagttctaaag 1700
|||||| |||||||
Sbjct: 182 ttcaaggtctaaag 195
>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full
insert sequence
Length = 2346
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Plus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 1325 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 1384
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 1385 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 1444
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 1445 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 1504
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 1505 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 1564
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 1565 cagcagaac 1573
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 1769 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 1828
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 1829 aacaaggggcccggcgccg 1847
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 1238 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 1291
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 1042 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 1090
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1081_G10
Length = 107955
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 31127 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 31068
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 31067 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 31008
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 31007 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 30948
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 30947 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 30888
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 30887 cagcagaac 30879
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 30683 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 30624
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 30623 aacaaggggcccggcgccg 30605
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 31277 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 31224
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 31473 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 31425
>gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020049, whole
genome shotgun sequence
Length = 25091
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Plus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 9104 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 9163
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 9164 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 9223
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 9224 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 9283
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 9284 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 9343
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 9344 cagcagaac 9352
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 9548 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 9607
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 9608 aacaaggggcccggcgccg 9626
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 8954 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 9007
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 8758 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 8806
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 1559804 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 1559745
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 1559744 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 1559685
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 1559684 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 1559625
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 1559624 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 1559565
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 1559564 cagcagaac 1559556
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 1559360 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 1559301
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 1559300 aacaaggggcccggcgccg 1559282
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 1559954 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 1559901
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 1560150 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 1560102
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 5178970 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 5178911
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 5178910 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 5178851
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 5178850 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 5178791
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 5178790 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 5178731
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 5178730 cagcagaac 5178722
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 5178526 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 5178467
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 5178466 aacaaggggcccggcgccg 5178448
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 5179120 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 5179067
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1190 tctccggcaccatcgacttcatcttcggc 1218
||||||||||| |||||||||||||||||
Sbjct: 10702569 tctccggcaccgtcgacttcatcttcggc 10702541
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 5179316 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 5179268
Score = 46.1 bits (23), Expect = 0.073
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1199 ccatcgacttcatcttcggcaac 1221
|||||||||||||||||||||||
Sbjct: 11933242 ccatcgacttcatcttcggcaac 11933264
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 14652781 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 14652722
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 14652721 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 14652662
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 14652661 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 14652602
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 14652601 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 14652542
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 14652541 cagcagaac 14652533
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 14652337 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 14652278
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 14652277 aacaaggggcccggcgccg 14652259
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 14652931 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 14652878
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1190 tctccggcaccatcgacttcatcttcggc 1218
||||||||||| |||||||||||||||||
Sbjct: 20176380 tctccggcaccgtcgacttcatcttcggc 20176352
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 14653127 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 14653079
Score = 46.1 bits (23), Expect = 0.073
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1199 ccatcgacttcatcttcggcaac 1221
|||||||||||||||||||||||
Sbjct: 21407053 ccatcgacttcatcttcggcaac 21407075
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 113 bits (57), Expect = 4e-022
Identities = 201/249 (80%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||||| |||||||| || |||| | |||||||||||||||||| | |||||||
Sbjct: 15868001 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgctgctggtgcag 15867942
Query: 1096 ggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 1155
|||| ||| |||| ||||||| || | |||| |||||||||||||||||||| |
Sbjct: 15867941 tcggacaagtcggtgttcctcaactgctggatggacgggttccaggacacgctgtacgcg 15867882
Query: 1156 cacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttc 1215
||| | | |||||||| |||||||||||| || | ||||||||||||||| |||||
Sbjct: 15867881 cactccaaggcgcagttctaccgcaactgcgtcatcacgggcaccatcgacttcgtcttc 15867822
Query: 1216 ggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggcccatggacaac 1275
||| || | || || ||||||||||||||| || ||| || || ||||||||||||
Sbjct: 15867821 ggcgacgccgccgccgtgttccagaactgcgtcctcacgctccgccgccccatggacaac 15867762
Query: 1276 cagcagaac 1284
|||||||||
Sbjct: 15867761 cagcagaac 15867753
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1477 gggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaac 1536
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 15867557 gggtacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtacgcc 15867498
Query: 1537 aaccgcgggcccggcgccg 1555
||| |||||||||||||
Sbjct: 15867497 aacaaggggcccggcgccg 15867479
Score = 52.0 bits (26), Expect = 0.001
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 949 accggccgcaagagcttcgccgacggcatcaccaccatgaagaccgccaccttc 1002
|||||| |||||| ||||||||||||| |||||||| | ||||| || ||||||
Sbjct: 15868151 accggcagcaagaacttcgccgacggcctcaccaccttcaagacagcaaccttc 15868098
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1190 tctccggcaccatcgacttcatcttcggc 1218
||||||||||| |||||||||||||||||
Sbjct: 21273798 tctccggcaccgtcgacttcatcttcggc 21273770
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 753 gccgaacgcgatcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 15868347 gccgaacgtcatcgtcgccaaggacggcagcggcaagttcaagaccatc 15868299
Score = 46.1 bits (23), Expect = 0.073
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1199 ccatcgacttcatcttcggcaac 1221
|||||||||||||||||||||||
Sbjct: 22504081 ccatcgacttcatcttcggcaac 22504103
>dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O18, full
insert sequence
Length = 2268
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 1577 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 1636
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 1637 ggcggtgttccagaactgcgtcatc 1661
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 1174 tcgtggccaaggacggcagcggcaagttcaagaccatc 1211
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 1458 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 1505
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1005_H01
Length = 128124
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 60810 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 60751
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 60750 ggcggtgttccagaactgcgtcatc 60726
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 59282 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 59341
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 59342 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 59390
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 59688 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 59747
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 59748 aagtggccggggttccacgtcat 59770
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 61390 tcgtggccaaggacggcagcggcaagttcaagaccatc 61353
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 60929 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 60882
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 59213 gcaccaggcggtggcgctccgg 59234
>gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018605, whole
genome shotgun sequence
Length = 17328
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 15530 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 15589
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 15590 ggcggtgttccagaactgcgtcatc 15614
Score = 81.8 bits (41), Expect = 1e-012
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 17060 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 17001
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| || ||||| ||||||||||| | || || |||||||||||||||
Sbjct: 17000 caccgtctacttcgtcttcggcaacgccgccgccgtgttccagaactgc 16952
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 16654 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 16595
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 16594 aagtggccggggttccacgtcat 16572
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 14950 tcgtggccaaggacggcagcggcaagttcaagaccatc 14987
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 15411 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 15458
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 17129 gcaccaggcggtggcgctccgg 17108
>ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2268
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 1577 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 1636
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 1637 ggcggtgttccagaactgcgtcatc 1661
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 1174 tcgtggccaaggacggcagcggcaagttcaagaccatc 1211
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 1458 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 1505
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 21736974 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 21736915
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 21736914 ggcggtgttccagaactgcgtcatc 21736890
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 21735446 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 21735505
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 21735506 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 21735554
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 21735852 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 21735911
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 21735912 aagtggccggggttccacgtcat 21735934
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 21737554 tcgtggccaaggacggcagcggcaagttcaagaccatc 21737517
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 21737093 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 21737046
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 21735377 gcaccaggcggtggcgctccgg 21735398
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 13249295 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 13249236
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 13249235 ggcggtgttccagaactgcgtcatc 13249211
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 13221192 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 13221251
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 13221252 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 13221300
Score = 81.8 bits (41), Expect = 1e-012
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 13247765 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 13247824
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| || ||||| ||||||||||| | || || |||||||||||||||
Sbjct: 13247825 caccgtctacttcgtcttcggcaacgccgccgccgtgttccagaactgc 13247873
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 13248171 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 13248230
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 13248231 aagtggccggggttccacgtcat 13248253
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 13249875 tcgtggccaaggacggcagcggcaagttcaagaccatc 13249838
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 13249414 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 13249367
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 13247696 gcaccaggcggtggcgctccgg 13247717
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 20851301 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 20851242
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 20851241 ggcggtgttccagaactgcgtcatc 20851217
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 20823198 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 20823257
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 20823258 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 20823306
Score = 81.8 bits (41), Expect = 1e-012
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 20849771 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 20849830
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| || ||||| ||||||||||| | || || |||||||||||||||
Sbjct: 20849831 caccgtctacttcgtcttcggcaacgccgccgccgtgttccagaactgc 20849879
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 20850177 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 20850236
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 20850237 aagtggccggggttccacgtcat 20850259
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 20851881 tcgtggccaaggacggcagcggcaagttcaagaccatc 20851844
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 20851420 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 20851373
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 20849702 gcaccaggcggtggcgctccgg 20849723
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 105 bits (53), Expect = 9e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 1167 gcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||||||| |||||||||||| ||||||||||| ||||||||||||||||| || | ||
Sbjct: 21975061 gcagttctaccgcaactgcgtcatctccggcaccgtcgacttcatcttcggcgacgccgc 21975002
Query: 1227 ggcggtgttccagaactgcctcatc 1251
||||||||||||||||||| |||||
Sbjct: 21975001 ggcggtgttccagaactgcgtcatc 21974977
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 21973533 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 21973592
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 21973593 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 21973641
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 21973939 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 21973998
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 21973999 aagtggccggggttccacgtcat 21974021
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 764 tcgtggccaaggacggcagcgggcagttcaagagcatc 801
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 21975641 tcgtggccaaggacggcagcggcaagttcaagaccatc 21975604
Score = 48.1 bits (24), Expect = 0.018
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1048 aacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||| | |||||||||||||||||| | |||||||
Sbjct: 21975180 aacacggcccgcgcggcgaagcaccaggcggtggcgctgctggtgcag 21975133
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 21973464 gcaccaggcggtggcgctccgg 21973485
>gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonica cultivar-group) cDNA clone
C52004_2A, mRNA sequence
Length = 309
Score = 91.7 bits (46), Expect = 1e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 135 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcnactgccgcgtctccgg 194
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| || | || |||||||||||||||
Sbjct: 195 caccgtcgacttcgtcttcggcaacgcgccagccgtgttccagaactgc 243
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 66 gcaccaggcggtggcgctccgg 87
>dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full
insert sequence
Length = 2099
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 1157 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 1216
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 1217 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 1276
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 1277 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 1336
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1337 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 1394
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 93450 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 93391
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 93390 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 93331
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 93330 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 93271
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 93270 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 93213
>gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006428, whole
genome shotgun sequence
Length = 19243
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 3617 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 3676
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 3677 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 3736
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 3737 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 3796
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 3797 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 3854
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 1881554 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 1881495
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 1881494 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 1881435
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 1881434 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 1881375
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1881374 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 1881317
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 10613864 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10613805
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 10613804 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10613745
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10613744 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 10613685
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 10613684 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 10613627
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 10806226 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10806167
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 10806166 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10806107
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10806106 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 10806047
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 10806046 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 10805989
Score = 56.0 bits (28), Expect = 8e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||| ||| | |||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct: 16618325 cagttctaccggagctgcgtcatctccggcaccgtcgacttcatcttcggcgacgcggcc 16618384
Query: 1228 gcggtgttccag 1239
|| ||||||||
Sbjct: 16618385 gccatgttccag 16618396
Score = 46.1 bits (23), Expect = 0.073
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1745 acacacgctcgcgcgcgcgcacacaca 1771
|||||||| ||||||||||||||||||
Sbjct: 25882093 acacacgcgcgcgcgcgcgcacacaca 25882067
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 10535738 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10535679
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 10535678 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10535619
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10535618 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 10535559
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 10535558 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 10535501
Score = 56.0 bits (28), Expect = 8e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||| ||| | |||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct: 15985575 cagttctaccggagctgcgtcatctccggcaccgtcgacttcatcttcggcgacgcggcc 15985634
Query: 1228 gcggtgttccag 1239
|| ||||||||
Sbjct: 15985635 gccatgttccag 15985646
Score = 46.1 bits (23), Expect = 0.073
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1745 acacacgctcgcgcgcgcgcacacaca 1771
|||||||| ||||||||||||||||||
Sbjct: 25334744 acacacgcgcgcgcgcgcgcacacaca 25334718
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 91.7 bits (46), Expect = 1e-015
Identities = 190/238 (79%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||||||||| |||||| | |||| ||||||||||| | |||| ||||
Sbjct: 10537637 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10537578
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| | |||||||||||| ||| ||| | | |||||| || |||| |||||
Sbjct: 10537577 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10537518
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| ||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10537517 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgccgg 10537458
Query: 1249 atcatcacgcggcggcccatggacaaccagcagaactcggtgacggcgcacgggcgca 1306
||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 10537457 atccaggtgcgccggtgcatggacaaccagcagaacatcgtgacggcgcaggggcgca 10537400
Score = 56.0 bits (28), Expect = 8e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 1168 cagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcg 1227
||||||| ||| | |||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct: 15991041 cagttctaccggagctgcgtcatctccggcaccgtcgacttcatcttcggcgacgcggcc 15991100
Query: 1228 gcggtgttccag 1239
|| ||||||||
Sbjct: 15991101 gccatgttccag 15991112
Score = 46.1 bits (23), Expect = 0.073
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1745 acacacgctcgcgcgcgcgcacacaca 1771
|||||||| ||||||||||||||||||
Sbjct: 25243344 acacacgcgcgcgcgcgcgcacacaca 25243318
>dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full
insert sequence
Length = 1923
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 1141 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 1200
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 1201 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 1249
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 1547 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 1606
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 1607 aagtggccggggttccacgtcat 1629
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 1072 gcaccaggcggtggcgctccgg 1093
>gb|AACV01018600.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018600, whole
genome shotgun sequence
Length = 31443
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Minus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 123 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 64
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 63 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 15
>ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1923
Score = 89.7 bits (45), Expect = 5e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||||||||
Sbjct: 1141 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 1200
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
|||| |||||||| ||||||||||| | || || |||||||||||||||
Sbjct: 1201 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 1249
Score = 54.0 bits (27), Expect = 3e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaagagggtc 1572
||||||||||||| |||||||| ||| |||||||||||||||| | || ||||||
Sbjct: 1547 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 1606
Query: 1573 aactggcccggcttccacgtcat 1595
|| ||||| || |||||||||||
Sbjct: 1607 aagtggccggggttccacgtcat 1629
Score = 44.1 bits (22), Expect = 0.29
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgg 1089
||||||||||||||||||||||
Sbjct: 1072 gcaccaggcggtggcgctccgg 1093
>dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F11, full
insert sequence
Length = 2119
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 1156 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 1215
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 1216 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 1275
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 1276 gtgtcggggacaatcgacttcatattcgggaactcg 1311
>gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017055, whole
genome shotgun sequence
Length = 2557
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 921 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 862
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 861 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 802
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 801 gtgtcggggacaatcgacttcatattcgggaactcg 766
>ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2119
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 1156 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 1215
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 1216 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 1275
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 1276 gtgtcggggacaatcgacttcatattcgggaactcg 1311
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0597G07
Length = 152928
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 124309 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 124368
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 124369 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 124428
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 124429 gtgtcggggacaatcgacttcatattcgggaactcg 124464
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 16948625 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 16948684
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 16948685 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 16948744
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 16948745 gtgtcggggacaatcgacttcatattcgggaactcg 16948780
Score = 56.0 bits (28), Expect = 8e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1489 tggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgcgg 1544
||||||||| |||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct: 16118946 tggaacggcagcttcgcgctcgacacgctctactacgccgagtacatgaaccgcgg 16118891
Score = 54.0 bits (27), Expect = 3e-004
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
|||||||||||||||||| |||||| | | ||||| ||||||||||| ||| | ||
Sbjct: 16119367 gcaccaggcggtggcgctgcgggtgaacgccgacctgtcggcgttctaccggtgcagctt 16119308
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgt 1187
|| | | ||||||||||||||||| |||| ||| || ||||||| |||| ||||||
Sbjct: 16119307 cgcgggctaccaggacacgctgtacgcgcactcgcttcgccagttctaccgcgactgcga 16119248
Query: 1188 ggtctccggcaccatcgacttcatcttcggc 1218
||| |||||| | |||||||||||||||
Sbjct: 16119247 catctacggcacggtggacttcatcttcggc 16119217
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 14934186 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 14934245
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 14934246 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 14934305
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 14934306 gtgtcggggacaatcgacttcatattcgggaactcg 14934341
Score = 56.0 bits (28), Expect = 8e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1489 tggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgcgg 1544
||||||||| |||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct: 14080927 tggaacggcagcttcgcgctcgacacgctctactacgccgagtacatgaaccgcgg 14080872
Score = 54.0 bits (27), Expect = 3e-004
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
|||||||||||||||||| |||||| | | ||||| ||||||||||| ||| | ||
Sbjct: 14081348 gcaccaggcggtggcgctgcgggtgaacgccgacctgtcggcgttctaccggtgcagctt 14081289
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgt 1187
|| | | ||||||||||||||||| |||| ||| || ||||||| |||| ||||||
Sbjct: 14081288 cgcgggctaccaggacacgctgtacgcgcactcgcttcgccagttctaccgcgactgcga 14081229
Query: 1188 ggtctccggcaccatcgacttcatcttcggc 1218
||| |||||| | |||||||||||||||
Sbjct: 14081228 catctacggcacggtggacttcatcttcggc 14081198
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 87.7 bits (44), Expect = 2e-014
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
|||||||||||||| ||||| | |||| | ||| | |||| ||||||| | ||| ||||
Sbjct: 28333625 caccaggcggtggctctccgcgcgcagagcgacatggcggtgttctaccagtgcgagttc 28333684
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 28333685 gacgggtaccaggacacgctgtacccgcacgcgcagcgccagttcttccgcgactgcaca 28333744
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcg 1224
|| || || || ||||||||||| ||||| ||||||
Sbjct: 28333745 gtgtcggggacaatcgacttcatattcgggaactcg 28333780
Score = 56.0 bits (28), Expect = 8e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1489 tggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgcgg 1544
||||||||| |||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct: 27480366 tggaacggcagcttcgcgctcgacacgctctactacgccgagtacatgaaccgcgg 27480311
Score = 54.0 bits (27), Expect = 3e-004
Identities = 120/151 (79%)
Strand = Plus / Minus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
|||||||||||||||||| |||||| | | ||||| ||||||||||| ||| | ||
Sbjct: 27480787 gcaccaggcggtggcgctgcgggtgaacgccgacctgtcggcgttctaccggtgcagctt 27480728
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgt 1187
|| | | ||||||||||||||||| |||| ||| || ||||||| |||| ||||||
Sbjct: 27480727 cgcgggctaccaggacacgctgtacgcgcactcgcttcgccagttctaccgcgactgcga 27480668
Query: 1188 ggtctccggcaccatcgacttcatcttcggc 1218
||| |||||| | |||||||||||||||
Sbjct: 27480667 catctacggcacggtggacttcatcttcggc 27480637
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,992,971
Number of Sequences: 438736
Number of extensions: 2992971
Number of successful extensions: 21344
Number of sequences better than 0.5: 176
Number of HSP's better than 0.5 without gapping: 205
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17404
Number of HSP's gapped (non-prelim): 3867
length of query: 1967
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1945
effective length of database: 2,790,767,724
effective search space: 5428043223180
effective search space used: 5428043223180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)