BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3977955.2.1
(867 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA... 216 2e-053
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 216 2e-053
gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) c... 216 2e-053
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 216 2e-053
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 216 2e-053
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 216 2e-053
dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA... 172 2e-040
gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) c... 172 2e-040
ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA 172 2e-040
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 172 2e-040
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 172 2e-040
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 172 2e-040
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 172 2e-040
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 172 2e-040
dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA... 96 4e-017
dbj|AP003798.3| Oryza sativa (japonica cultivar-group) geno... 96 4e-017
gb|AACV01018600.1| Oryza sativa (japonica cultivar-group) c... 96 4e-017
ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA 96 4e-017
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 96 4e-017
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 96 4e-017
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 96 4e-017
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 96 4e-017
gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonic... 90 2e-015
dbj|AB156310.1| Oryza sativa (japonica cultivar-group) DNA,... 88 9e-015
gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) c... 88 9e-015
gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) c... 86 4e-014
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 86 4e-014
ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Oz... 86 4e-014
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 86 4e-014
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 86 4e-014
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 86 4e-014
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 86 4e-014
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 86 4e-014
dbj|AP000570.1| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) c... 78 9e-012
ref|NM_187890.1| Oryza sativa (japonica cultivar-group), Oz... 78 9e-012
dbj|AP000492.1| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA... 76 4e-011
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 76 4e-011
gb|AACV01001148.1| Oryza sativa (japonica cultivar-group) c... 76 4e-011
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 76 4e-011
ref|XM_474065.1| Oryza sativa (japonica cultivar-group), p... 76 4e-011
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 76 4e-011
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 76 4e-011
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 76 4e-011
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 76 4e-011
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 76 4e-011
dbj|AK107006.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AACV01000866.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|NM_183700.1| Oryza sativa (japonica cultivar-group), p... 74 1e-010
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 74 1e-010
gb|C98771.1|C98771 C98771 Rice panicle at flowering stage O... 72 6e-010
dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA... 72 6e-010
gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) c... 72 6e-010
ref|XM_472740.1| Oryza sativa (japonica cultivar-group), p... 72 6e-010
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 72 6e-010
emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromoso... 72 6e-010
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 68 9e-009
gb|AACV01011130.1| Oryza sativa (japonica cultivar-group) c... 68 9e-009
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 68 9e-009
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 68 9e-009
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 68 9e-009
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 68 9e-009
dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AP004343.2| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|AP006268.4| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AACV01017005.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA 66 3e-008
dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 62 5e-007
ref|NM_183704.1| Oryza sativa (japonica cultivar-group), p... 62 5e-007
dbj|AP005710.1| Oryza sativa (japonica cultivar-group) chro... 52 5e-004
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 52 5e-004
gb|AACV01020493.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
gb|AACV01022444.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 52 5e-004
dbj|AP005862.2| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|AC123897.3| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|AC128643.3| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 50 0.002
gb|CV723475.1|CV723475 root--03-L02.g1 Rice root lambda pha... 50 0.002
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 48 0.008
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 48 0.008
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.032
dbj|AK106869.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.032
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 46 0.032
dbj|AP006162.2| Oryza sativa (japonica cultivar-group) geno... 46 0.032
gb|AACV01020566.1| Oryza sativa (japonica cultivar-group) c... 46 0.032
ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.032
gb|CG408589.1|CG408589 Ds281 Ds insertion lines Oryza sativ... 44 0.12
dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01006830.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.12
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 44 0.12
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (j... 42 0.49
dbj|AK070275.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.49
dbj|AK100871.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.49
dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.49
gb|AC137693.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|AC136149.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
ref|NT_107131.1| Oryza sativa (japonica cultivar-group) 42 0.49
gb|AC135190.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01023436.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01023439.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
gb|AACV01023759.1| Oryza sativa (japonica cultivar-group) c... 42 0.49
ref|XM_475113.1| Oryza sativa (japonica cultivar-group), p... 42 0.49
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 42 0.49
gb|CH401266.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.49
>dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full
insert sequence
Length = 2099
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Minus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 1794 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 1735
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 1734 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 1675
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1674 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 1615
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 1614 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 1555
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 1554 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 1502
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Minus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 1463 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 1404
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 1403 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 1344
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1343 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 1284
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 1283 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 1225
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 1224 tgcccgtcgaa 1214
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 92813 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 92872
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 92873 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 92932
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 92933 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 92992
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 92993 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 93052
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 93053 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 93105
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 93144 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 93203
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 93204 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 93263
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 93264 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 93323
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 93324 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 93382
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 93383 tgcccgtcgaa 93393
>gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006428, whole
genome shotgun sequence
Length = 19243
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Minus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 4254 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 4195
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 4194 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 4135
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4134 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 4075
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 4074 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 4015
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 4014 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 3962
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Minus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 3923 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 3864
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 3863 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 3804
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 3803 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 3744
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 3743 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 3685
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 3684 tgcccgtcgaa 3674
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 1880917 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 1880976
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 1880977 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 1881036
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1881037 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 1881096
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 1881097 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 1881156
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 1881157 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 1881209
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 1881248 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 1881307
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 1881308 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 1881367
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1881368 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 1881427
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 1881428 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 1881486
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 1881487 tgcccgtcgaa 1881497
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 10613227 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 10613286
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 10613287 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 10613346
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10613347 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 10613406
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 10613407 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 10613466
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 10613467 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 10613519
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 10613558 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 10613617
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 10613618 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 10613677
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 10613678 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 10613737
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 10613738 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 10613796
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 10613797 tgcccgtcgaa 10613807
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 10805589 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 10805648
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 10805649 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 10805708
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10805709 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 10805768
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 10805769 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 10805828
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 10805829 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 10805881
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 10805920 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 10805979
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 10805980 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 10806039
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 10806040 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 10806099
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 10806100 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 10806158
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 10806159 tgcccgtcgaa 10806169
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 16618375 gccgaagatgaagtcgacggtgccgg 16618350
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 10535101 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 10535160
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 10535161 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 10535220
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10535221 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 10535280
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 10535281 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 10535340
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 10535341 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 10535393
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 10535432 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 10535491
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 10535492 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 10535551
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 10535552 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 10535611
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 10535612 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 10535670
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 10535671 tgcccgtcgaa 10535681
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 15985625 gccgaagatgaagtcgacggtgccgg 15985600
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 216 bits (109), Expect = 2e-053
Identities = 247/293 (84%)
Strand = Plus / Plus
Query: 271 tgctcctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgc 330
||||||||||||| || || |||||||||||||| |||||||| |||| || |||
Sbjct: 10537000 tgctcctgcggcaacaggccggggatgaacggcacgccgaactttgggagccacgtctgt 10537059
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttg 390
||||||||||| |||| |||||| ||| || |||||||| || ||| ||||| ||||||
Sbjct: 10537060 ccctggatgaacctctcgacggtgtacttctgctgcgcctgctggtacgtgaccgtcttg 10537119
Query: 391 atgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctcc 450
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10537120 acccctctccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttctccacctcg 10537179
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcg 510
|||||| || || | |||||||||||||||| |||| ||||| |||| ||||||
Sbjct: 10537180 gcgtagtagcaggtgttgaggccgaagtcgccgagccacggcagccacccctgcgggtcg 10537239
Query: 511 atgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 10537240 atgaacccgccgatgtcggactggatgtagagcgtccgcgagtactccttcca 10537292
Score = 125 bits (63), Expect = 4e-026
Identities = 206/251 (82%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 605 ccttgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagc 664
||||||||||| ||| |||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 10537331 ccttgaagtcctcgtgcggctcgatggtgcagttgtggatcaccgtgccgcccgcggagt 10537390
Query: 665 gcttgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggg 724
|||| ||| |||||||||||||| | |||||| |||||| ||||| | ||
Sbjct: 10537391 gcttctccttgcgcccctgcgccgtcacgatgttctgctggttgtccatgcaccggcgca 10537450
Query: 725 gctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgc 784
||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 10537451 cctggatccggcagttctggagcaccacctgcgcgttgccgaagatgaagtcgatggtgc 10537510
Query: 785 cggtcacccggcagtcgcggaagaactgcc-gctgcgcgtgcgtgtacagcgtgtcctgg 843
|||| | |||||||||| || |||||| |||| | ||| ||||| ||||||||||||
Sbjct: 10537511 cggtgatggtgcagtcgcggtagtactgcctgctg-gtgtgggtgtagagcgtgtcctgg 10537569
Query: 844 tagccgtcgaa 854
| ||||||||
Sbjct: 10537570 tgcccgtcgaa 10537580
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 15991091 gccgaagatgaagtcgacggtgccgg 15991066
>dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F11, full
insert sequence
Length = 2119
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 1757 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 1698
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 1697 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 1638
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 1637 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 1578
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 1577 cactccagcca 1567
Score = 163 bits (82), Expect = 2e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 1397 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 1338
Query: 730 atcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgccggtc 789
| || ||||||||| || || ||||| ||||| ||||| ||||||||||| || || | |
Sbjct: 1337 agcaagcagttctgaagaacaacctgcgagttcccgaatatgaagtcgattgtccccgac 1278
Query: 790 acccggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccg 849
|| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct: 1277 actgtgcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccg 1218
Query: 850 tcgaaggtgcactggtag 867
||||| ||||||||||
Sbjct: 1217 tcgaactcgcactggtag 1200
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 1544 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 1485
Query: 580 gt 581
||
Sbjct: 1484 gt 1483
>gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017055,
whole genome shotgun sequence
Length = 2557
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Plus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 234 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 293
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 294 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 353
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 354 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 413
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 414 cactccagcca 424
Score = 103 bits (52), Expect = 2e-019
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||||||
Sbjct: 762 cctgcgagttcccgaatatgaagtcgattgtccccgacactgtgcagtcgcggaagaact 821
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggtgcactggtag 867
| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct: 822 ggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaactcgcactggtag 877
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 594 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 653
Query: 730 atcaggcagttctg 743
| || |||||||||
Sbjct: 654 agcaagcagttctg 667
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 447 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 506
Query: 580 gt 581
||
Sbjct: 507 gt 508
>ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2119
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 1757 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 1698
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 1697 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 1638
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 1637 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 1578
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 1577 cactccagcca 1567
Score = 163 bits (82), Expect = 2e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 1397 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 1338
Query: 730 atcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgccggtc 789
| || ||||||||| || || ||||| ||||| ||||| ||||||||||| || || | |
Sbjct: 1337 agcaagcagttctgaagaacaacctgcgagttcccgaatatgaagtcgattgtccccgac 1278
Query: 790 acccggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccg 849
|| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct: 1277 actgtgcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccg 1218
Query: 850 tcgaaggtgcactggtag 867
||||| ||||||||||
Sbjct: 1217 tcgaactcgcactggtag 1200
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 1544 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 1485
Query: 580 gt 581
||
Sbjct: 1484 gt 1483
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0597G07
Length = 152928
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 124996 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 124937
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 124936 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 124877
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 124876 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 124817
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 124816 cactccagcca 124806
Score = 103 bits (52), Expect = 2e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||||||
Sbjct: 124468 cctgcgagttcccgaatatgaagtcgattgtccccgacactgtgcagtcgcggaagaact 124409
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggtgcactggtag 867
| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct: 124408 ggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaactcgcactggtag 124353
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 124783 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 124724
Query: 580 gt 581
||
Sbjct: 124723 gt 124722
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 124636 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 124577
Query: 730 atcaggcagttctg 743
| || |||||||||
Sbjct: 124576 agcaagcagttctg 124563
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 16949312 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 16949253
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 16949252 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 16949193
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 16949192 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 16949133
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 16949132 cactccagcca 16949122
Score = 103 bits (52), Expect = 2e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||||||
Sbjct: 16948784 cctgcgagttcccgaatatgaagtcgattgtccccgacactgtgcagtcgcggaagaact 16948725
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggtgcactggtag 867
| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct: 16948724 ggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaactcgcactggtag 16948669
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 16949099 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 16949040
Query: 580 gt 581
||
Sbjct: 16949039 gt 16949038
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 16948952 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 16948893
Query: 730 atcaggcagttctg 743
| || |||||||||
Sbjct: 16948892 agcaagcagttctg 16948879
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||||||||| ||||||| || ||| ||||| ||||||||||||||||||||| ||||
Sbjct: 16119250 gcagtcgcggtagaactggcgaagcgagtgcgcgtacagcgtgtcctggtagcccgcgaa 16119309
Query: 855 ggtgcactggtag 867
| ||||| |||||
Sbjct: 16119310 gctgcaccggtag 16119322
Score = 60.0 bits (30), Expect = 2e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 419 tgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagt 478
|||||||||||||||||||||| ||| |||||| ||||||| ||||| |||||
Sbjct: 16118877 tgtcggcgccgtcgccgcggttcatgtactcggcgtagtagagcgtgtcgagcgcgaagc 16118936
Query: 479 cgccgttccactcgagccagcccttggggt 508
|||||||||||||||||| ||| ||||||
Sbjct: 16118937 tgccgttccactcgagccaccccctggggt 16118966
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 14934873 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 14934814
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 14934813 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 14934754
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 14934753 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 14934694
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 14934693 cactccagcca 14934683
Score = 103 bits (52), Expect = 2e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||||||
Sbjct: 14934345 cctgcgagttcccgaatatgaagtcgattgtccccgacactgtgcagtcgcggaagaact 14934286
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggtgcactggtag 867
| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct: 14934285 ggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaactcgcactggtag 14934230
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 14934660 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 14934601
Query: 580 gt 581
||
Sbjct: 14934600 gt 14934599
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 14934513 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 14934454
Query: 730 atcaggcagttctg 743
| || |||||||||
Sbjct: 14934453 agcaagcagttctg 14934440
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||||||||| ||||||| || ||| ||||| ||||||||||||||||||||| ||||
Sbjct: 14081231 gcagtcgcggtagaactggcgaagcgagtgcgcgtacagcgtgtcctggtagcccgcgaa 14081290
Query: 855 ggtgcactggtag 867
| ||||| |||||
Sbjct: 14081291 gctgcaccggtag 14081303
Score = 60.0 bits (30), Expect = 2e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 419 tgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagt 478
|||||||||||||||||||||| ||| |||||| ||||||| ||||| |||||
Sbjct: 14080858 tgtcggcgccgtcgccgcggttcatgtactcggcgtagtagagcgtgtcgagcgcgaagc 14080917
Query: 479 cgccgttccactcgagccagcccttggggt 508
|||||||||||||||||| ||| ||||||
Sbjct: 14080918 tgccgttccactcgagccaccccctggggt 14080947
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 28334312 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 28334253
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 28334252 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 28334193
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 28334192 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 28334133
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 28334132 cactccagcca 28334122
Score = 103 bits (52), Expect = 2e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||||||
Sbjct: 28333784 cctgcgagttcccgaatatgaagtcgattgtccccgacactgtgcagtcgcggaagaact 28333725
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggtgcactggtag 867
| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct: 28333724 ggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaactcgcactggtag 28333669
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 28334099 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 28334040
Query: 580 gt 581
||
Sbjct: 28334039 gt 28334038
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 28333952 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 28333893
Query: 730 atcaggcagttctg 743
| || |||||||||
Sbjct: 28333892 agcaagcagttctg 28333879
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||||||||| ||||||| || ||| ||||| ||||||||||||||||||||| ||||
Sbjct: 27480670 gcagtcgcggtagaactggcgaagcgagtgcgcgtacagcgtgtcctggtagcccgcgaa 27480729
Query: 855 ggtgcactggtag 867
| ||||| |||||
Sbjct: 27480730 gctgcaccggtag 27480742
Score = 60.0 bits (30), Expect = 2e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 419 tgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagt 478
|||||||||||||||||||||| ||| |||||| ||||||| ||||| |||||
Sbjct: 27480297 tgtcggcgccgtcgccgcggttcatgtactcggcgtagtagagcgtgtcgagcgcgaagc 27480356
Query: 479 cgccgttccactcgagccagcccttggggt 508
|||||||||||||||||| ||| ||||||
Sbjct: 27480357 tgccgttccactcgagccaccccctggggt 27480386
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 172 bits (87), Expect = 2e-040
Identities = 165/191 (86%)
Strand = Plus / Minus
Query: 307 ccgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgc 366
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 29336307 ccgaacttggggatgaactcctggccctggatgaaggcctccacggtgaactccttctgg 29336248
Query: 367 gcctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcg 426
| |||| |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct: 29336247 acgtcctggtaggtgagggactggacgcccttccacttggcgcgcttgctcatgtcggcg 29336188
Query: 427 ccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttc 486
||| ||| ||||||| |||||||||||| |||| || || ||| |||||| |||||||
Sbjct: 29336187 ccggggccatggttgtcaacctccgcgtagtagagggtgtccagggcgaagttgccgttc 29336128
Query: 487 cactcgagcca 497
||||| |||||
Sbjct: 29336127 cactccagcca 29336117
Score = 103 bits (52), Expect = 2e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||| ||||| ||||||||||| || || | ||| |||||||||||||||||
Sbjct: 29335779 cctgcgagttcccgaatatgaagtcgattgtccccgacactgtgcagtcgcggaagaact 29335720
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggtgcactggtag 867
| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct: 29335719 ggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaactcgcactggtag 29335664
Score = 67.9 bits (34), Expect = 9e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 520 ccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtac 579
||||| |||||||| | | |||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 29336094 ccgatctcgttctgcacgaagatggtccgcgagtactccttccacggccgcgccaggtac 29336035
Query: 580 gt 581
||
Sbjct: 29336034 gt 29336033
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 670 tcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctgg 729
|||||||||||||||||||| |||||||| ||||||| |||| ||||| || ||||||
Sbjct: 29335947 tcccgccgcccctgcgccgttatgatgttcacctggttgtccatcggcttacgaggctgg 29335888
Query: 730 atcaggcagttctg 743
| || |||||||||
Sbjct: 29335887 agcaagcagttctg 29335874
Score = 65.9 bits (33), Expect = 3e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||||||||| ||||||| || ||| ||||| ||||||||||||||||||||| ||||
Sbjct: 28506245 gcagtcgcggtagaactggcgaagcgagtgcgcgtacagcgtgtcctggtagcccgcgaa 28506304
Query: 855 ggtgcactggtag 867
| ||||| |||||
Sbjct: 28506305 gctgcaccggtag 28506317
Score = 60.0 bits (30), Expect = 2e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 419 tgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagt 478
|||||||||||||||||||||| ||| |||||| ||||||| ||||| |||||
Sbjct: 28505872 tgtcggcgccgtcgccgcggttcatgtactcggcgtagtagagcgtgtcgagcgcgaagc 28505931
Query: 479 cgccgttccactcgagccagcccttggggt 508
|||||||||||||||||| ||| ||||||
Sbjct: 28505932 tgccgttccactcgagccaccccctggggt 28505961
>dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full
insert sequence
Length = 1923
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 1225 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 1166
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 1165 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 1130
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1005_H01
Length = 128124
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 59366 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 59307
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 59306 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 59271
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct: 60444 ctccgcgtaccagagcgtcttgagcccgaagtcgccgctccac 60486
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 60759 gccgaagatgaagtcgacggtgccgg 60784
>gb|AACV01018600.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018600,
whole genome shotgun sequence
Length = 31443
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 39 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 98
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 99 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 134
>ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1923
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 1225 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 1166
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 1165 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 1130
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 21735530 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 21735471
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 21735470 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 21735435
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct: 21736608 ctccgcgtaccagagcgtcttgagcccgaagtcgccgctccac 21736650
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 21736923 gccgaagatgaagtcgacggtgccgg 21736948
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 13221276 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 13221217
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 13221216 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 13221181
Score = 87.7 bits (44), Expect = 9e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| ||||| || |||||||| || |||||||||||| ||||||| || |
Sbjct: 13247849 gttgccgaagacgaagtagacggtgccggagacgcggcagtcgcggtagaactggcggag 13247790
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 13247789 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 13247754
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct: 13248927 ctccgcgtaccagagcgtcttgagcccgaagtcgccgctccac 13248969
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 13249244 gccgaagatgaagtcgacggtgccgg 13249269
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 20823282 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 20823223
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 20823222 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 20823187
Score = 87.7 bits (44), Expect = 9e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| ||||| || |||||||| || |||||||||||| ||||||| || |
Sbjct: 20849855 gttgccgaagacgaagtagacggtgccggagacgcggcagtcgcggtagaactggcggag 20849796
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 20849795 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 20849760
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct: 20850933 ctccgcgtaccagagcgtcttgagcccgaagtcgccgctccac 20850975
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 20851250 gccgaagatgaagtcgacggtgccgg 20851275
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 95.6 bits (48), Expect = 4e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 21973617 gttgccgaagacgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 21973558
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 21973557 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 21973522
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct: 21974695 ctccgcgtaccagagcgtcttgagcccgaagtcgccgctccac 21974737
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 21975010 gccgaagatgaagtcgacggtgccgg 21975035
>gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52004_2A, mRNA sequence
Length = 309
Score = 89.7 bits (45), Expect = 2e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| || ||||||| |||| ||||||| || |
Sbjct: 219 gttgccgaagacgaagtcgacggtgccggagacgcggcagtngcggtagaactggcggag 160
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 159 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 124
>dbj|AB156310.1| Oryza sativa (japonica cultivar-group) DNA, clone:T23358T, 3'
flanking sequence of Tos17 insertion in rice strain
NF7008, genomic survey sequence
Length = 334
Score = 87.7 bits (44), Expect = 9e-015
Identities = 141/170 (82%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 331 ccctggatgaaggtctccacggtgaactccttctgcgcc-tcctcgtaggtgacggtctt 389
||||||||||||| |||||||||||||||||||||| | |||| |||||||| || ||
Sbjct: 110 ccctggatgaaggcctccacggtgaactccttctgctacgtcctggtaggtgagggactg 169
Query: 390 ga-tgcctccccacttggcgcgcttgctcatgtcg-gcgccgtcgccgcggttgtccacc 447
|| |||| |||||||||||||||||||||| | |||||| ||| ||||||| |||
Sbjct: 170 gaatgcccttccacttggcgcgcttgctcatgncntgcgccggggccatggttgtcaacc 229
Query: 448 tccgcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 497
|||||||| | || || || ||| |||||| |||||||||||| |||||
Sbjct: 230 tccgcgtactatagggtgtccagggcgaagttgccgttccactccagcca 279
>gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018605, whole
genome shotgun sequence
Length = 17328
Score = 87.7 bits (44), Expect = 9e-015
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| ||||| || |||||||| || |||||||||||| ||||||| || |
Sbjct: 16976 gttgccgaagacgaagtagacggtgccggagacgcggcagtcgcggtagaactggcggag 17035
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|| ||||| ||||||||||||||||||||| |||||
Sbjct: 17036 cgagtgcgcgtacagcgtgtcctggtagccctcgaa 17071
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct: 15898 ctccgcgtaccagagcgtcttgagcccgaagtcgccgctccac 15856
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 762 gccgaagatgaagtcgatggtgccgg 787
||||||||||||||||| ||||||||
Sbjct: 15581 gccgaagatgaagtcgacggtgccgg 15556
>gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000523, whole
genome shotgun sequence
Length = 18295
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17190 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 17240
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7427586 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 7427536
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 8445005 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8445064
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 8445065 ggagtgcgcgtagagcgtgtcctggtggccctcga 8445099
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 15630537 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 15630478
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 15630477 gccgctgcgcatgcgggtagagcgtgtcctggta 15630444
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct: 11696727 gcaggcgcggtagaactgccggagcgagtgcgtgtacagcgtgtcctggtacgcctcgaa 11696786
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 11696787 gctgcactggtag 11696799
Score = 61.9 bits (31), Expect = 5e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 756 ggagttgccgaagatgaagtcgatggtgccg 786
|||||||||||||||||||||||||||||||
Sbjct: 11730674 ggagttgccgaagatgaagtcgatggtgccg 11730644
Score = 50.1 bits (25), Expect = 0.002
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcg---ccgttccactcgagccagcccttggggt 508
||||||||||||||| ||| |||||||| ||||||||||||||||| ||| | ||||
Sbjct: 33533676 cgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagccaacccctcgggt 33533617
Query: 509 cga 511
|||
Sbjct: 33533616 cga 33533614
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtc 851
|||||||||| ||||||| || || ||||| |||||| |||||||||||||||||
Sbjct: 33533333 gcagtcgcggtagaactggcggagctggtgcgcgtacagggtgtcctggtagccgtc 33533277
Score = 48.1 bits (24), Expect = 0.008
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||| |||||||| |||||| | || ||||| | | |||||||||||
Sbjct: 38281512 gagttgccgaagacgaagtcgacggtgccagagacgcggcaccgggtgtagaactgccgc 38281571
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggt 844
||||||| |||||||||||||||||
Sbjct: 38281572 atggcgtgcgcgtacagcgtgtcctggt 38281599
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 15630679 gctggatcaagcagttctggagcaccacctg 15630649
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||| ||||||||| ||| |||||||||||||||||
Sbjct: 38281186 cgtagtagagcgtcttgagcgcgaagtcgccgttccac 38281223
Score = 44.1 bits (22), Expect = 0.12
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 497
||||| ||||||| ||||| |||||| |||| |||||||||||||
Sbjct: 11730975 cgtagtagagcgtgtcgagcgcgaagttgccgctccactcgagcca 11730930
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 550 gagtactccttccagggccgcgccaggta 578
|||||||||||||||||||| |||||||
Sbjct: 38281284 gagtactccttccagggccggcccaggta 38281312
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 15630822 tactccttccacggccgcgccatgtacgt 15630794
>ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Ozsa8251 predicted mRNA
Length = 1866
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1335 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 1285
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7427426 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 7427376
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 8444845 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8444904
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 8444905 ggagtgcgcgtagagcgtgtcctggtggccctcga 8444939
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 90832 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 90782
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7506325 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 7506275
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 8498632 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8498691
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 8498692 ggagtgcgcgtagagcgtgtcctggtggccctcga 8498726
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7506325 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 7506275
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 8498632 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8498691
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 8498692 ggagtgcgcgtagagcgtgtcctggtggccctcga 8498726
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 15649158 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 15649099
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 15649098 gccgctgcgcatgcgggtagagcgtgtcctggta 15649065
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct: 11766218 gcaggcgcggtagaactgccggagcgagtgcgtgtacagcgtgtcctggtacgcctcgaa 11766277
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 11766278 gctgcactggtag 11766290
Score = 61.9 bits (31), Expect = 5e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 756 ggagttgccgaagatgaagtcgatggtgccg 786
|||||||||||||||||||||||||||||||
Sbjct: 11802669 ggagttgccgaagatgaagtcgatggtgccg 11802639
Score = 50.1 bits (25), Expect = 0.002
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcg---ccgttccactcgagccagcccttggggt 508
||||||||||||||| ||| |||||||| ||||||||||||||||| ||| | ||||
Sbjct: 33115445 cgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagccaacccctcgggt 33115386
Query: 509 cga 511
|||
Sbjct: 33115385 cga 33115383
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtc 851
|||||||||| ||||||| || || ||||| |||||| |||||||||||||||||
Sbjct: 33115102 gcagtcgcggtagaactggcggagctggtgcgcgtacagggtgtcctggtagccgtc 33115046
Score = 48.1 bits (24), Expect = 0.008
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||| |||||||| |||||| | || ||||| | | |||||||||||
Sbjct: 37666171 gagttgccgaagacgaagtcgacggtgccagagacgcggcaccgggtgtagaactgccgc 37666230
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggt 844
||||||| |||||||||||||||||
Sbjct: 37666231 atggcgtgcgcgtacagcgtgtcctggt 37666258
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 15649300 gctggatcaagcagttctggagcaccacctg 15649270
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||| ||||||||| ||| |||||||||||||||||
Sbjct: 37665845 cgtagtagagcgtcttgagcgcgaagtcgccgttccac 37665882
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||| ||||||||| ||| |||||||||||||||||
Sbjct: 37664385 cgtagtagagcgtcttgagcgcgaagtcgccgttccac 37664422
Score = 44.1 bits (22), Expect = 0.12
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 497
||||| ||||||| ||||| |||||| |||| |||||||||||||
Sbjct: 11802970 cgtagtagagcgtgtcgagcgcgaagttgccgctccactcgagcca 11802925
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 550 gagtactccttccagggccgcgccaggta 578
|||||||||||||||||||| |||||||
Sbjct: 37665943 gagtactccttccagggccggcccaggta 37665971
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 550 gagtactccttccagggccgcgccaggta 578
|||||||||||||||||||| |||||||
Sbjct: 37664483 gagtactccttccagggccggcccaggta 37664511
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 15649443 tactccttccacggccgcgccatgtacgt 15649415
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7429804 gcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggta 7429754
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 8447223 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8447282
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 8447283 ggagtgcgcgtagagcgtgtcctggtggccctcga 8447317
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 15632755 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 15632696
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 15632695 gccgctgcgcatgcgggtagagcgtgtcctggta 15632662
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct: 11698945 gcaggcgcggtagaactgccggagcgagtgcgtgtacagcgtgtcctggtacgcctcgaa 11699004
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 11699005 gctgcactggtag 11699017
Score = 61.9 bits (31), Expect = 5e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 756 ggagttgccgaagatgaagtcgatggtgccg 786
|||||||||||||||||||||||||||||||
Sbjct: 11732892 ggagttgccgaagatgaagtcgatggtgccg 11732862
Score = 50.1 bits (25), Expect = 0.002
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcg---ccgttccactcgagccagcccttggggt 508
||||||||||||||| ||| |||||||| ||||||||||||||||| ||| | ||||
Sbjct: 33453006 cgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagccaacccctcgggt 33452947
Query: 509 cga 511
|||
Sbjct: 33452946 cga 33452944
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtc 851
|||||||||| ||||||| || || ||||| |||||| |||||||||||||||||
Sbjct: 33452663 gcagtcgcggtagaactggcggagctggtgcgcgtacagggtgtcctggtagccgtc 33452607
Score = 48.1 bits (24), Expect = 0.008
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||| |||||||| |||||| | || ||||| | | |||||||||||
Sbjct: 38200842 gagttgccgaagacgaagtcgacggtgccagagacgcggcaccgggtgtagaactgccgc 38200901
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggt 844
||||||| |||||||||||||||||
Sbjct: 38200902 atggcgtgcgcgtacagcgtgtcctggt 38200929
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 15632897 gctggatcaagcagttctggagcaccacctg 15632867
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccac 489
||||| ||||||||| ||| |||||||||||||||||
Sbjct: 38200516 cgtagtagagcgtcttgagcgcgaagtcgccgttccac 38200553
Score = 44.1 bits (22), Expect = 0.12
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 497
||||| ||||||| ||||| |||||| |||| |||||||||||||
Sbjct: 11733193 cgtagtagagcgtgtcgagcgcgaagttgccgctccactcgagcca 11733148
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 550 gagtactccttccagggccgcgccaggta 578
|||||||||||||||||||| |||||||
Sbjct: 38200614 gagtactccttccagggccggcccaggta 38200642
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 15633040 tactccttccacggccgcgccatgtacgt 15633012
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0711E10
Length = 157903
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 22376 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 22435
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 22436 ggagtgcgcgtagagcgtgtcctggtggccctcga 22470
>gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000591, whole
genome shotgun sequence
Length = 78605
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 25586 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 25527
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 25526 ggagtgcgcgtagagcgtgtcctggtggccctcga 25492
>ref|NM_187890.1| Oryza sativa (japonica cultivar-group), Ozsa8332 predicted mRNA
Length = 1836
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 1374 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 1315
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 1314 ggagtgcgcgtagagcgtgtcctggtggccctcga 1280
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0705D01
Length = 147174
Score = 77.8 bits (39), Expect = 9e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
|||||||||||||||||||| |||||||| || |||||||||||| ||||||| || |
Sbjct: 62178 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 62237
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
| ||||| ||| ||||||||||||| ||| ||||
Sbjct: 62238 ggagtgcgcgtagagcgtgtcctggtggccctcga 62272
>dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061N09, full
insert sequence
Length = 3236
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 2481 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 2422
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 2421 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 2384
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0416G11
Length = 138858
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 70652 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 70593
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 70592 gccgctgcgcatgcgggtagagcgtgtcctggta 70559
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 70794 gctggatcaagcagttctggagcaccacctg 70764
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 70937 tactccttccacggccgcgccatgtacgt 70909
>gb|AACV01001148.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001148, whole
genome shotgun sequence
Length = 19551
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 3574 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 3633
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 3634 gccgctgcgcatgcgggtagagcgtgtcctggta 3667
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 3432 gctggatcaagcagttctggagcaccacctg 3462
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 3289 tactccttccacggccgcgccatgtacgt 3317
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 55180 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 55121
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 55120 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 55083
>ref|XM_474065.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2916
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 2441 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 2382
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 2381 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 2344
>ref|NT_079947.2| Oryza sativa (japonica cultivar-group)
Length = 1767736
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 659002 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 658943
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 658942 gccgctgcgcatgcgggtagagcgtgtcctggta 658909
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 659144 gctggatcaagcagttctggagcaccacctg 659114
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 659287 tactccttccacggccgcgccatgtacgt 659259
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 57307 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 57248
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 57247 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 57210
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 10346051 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 10345992
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 10345991 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 10345954
Score = 71.9 bits (36), Expect = 6e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 756 ggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccg 815
|||||||||||||||||||||||||||||||| | ||||| |||||||||||| ||
Sbjct: 765006 ggagttgccgaagatgaagtcgatggtgccggagatgacgcagttgcggaagaactggcg 765065
Query: 816 ctgcgcgtgcgtgtacagcgtgtcctgg 843
| | |||||| |||||| |||||||||
Sbjct: 765066 ccgggcgtgcacgtacagggtgtcctgg 765093
Score = 44.1 bits (22), Expect = 0.12
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 407 cgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcgtct 466
|||||||||| || |||||||| ||||||||||| | ||| |||||| ||||||| |
Sbjct: 764660 cgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagtagagcgtgt 764719
Query: 467 cgaggccgaagtcgccgttcca 488
||| |||| |||||||||||
Sbjct: 764720 tgagcgcgaattcgccgttcca 764741
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 75.8 bits (38), Expect = 4e-011
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 752 cctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaact 811
|||| ||||||| | | ||||||||||||||||| | ||| ||||||||| ||||||
Sbjct: 4032663 cctgcgagttgcagtatatgaagtcgatggtgccagacacggagcagtcgcgttagaact 4032604
Query: 812 gccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||||||||| |||| ||| ||||||||||||||
Sbjct: 4032603 gccgctgcgcatgcgggtagagcgtgtcctggta 4032570
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct: 149723 gcaggcgcggtagaactgccggagcgagtgcgtgtacagcgtgtcctggtacgcctcgaa 149782
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 149783 gctgcactggtag 149795
Score = 61.9 bits (31), Expect = 5e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 756 ggagttgccgaagatgaagtcgatggtgccg 786
|||||||||||||||||||||||||||||||
Sbjct: 186174 ggagttgccgaagatgaagtcgatggtgccg 186144
Score = 46.1 bits (23), Expect = 0.032
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 725 gctggatcaggcagttctgcagcaccacctg 755
||||||||| ||||||||| |||||||||||
Sbjct: 4032805 gctggatcaagcagttctggagcaccacctg 4032775
Score = 44.1 bits (22), Expect = 0.12
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 497
||||| ||||||| ||||| |||||| |||| |||||||||||||
Sbjct: 186475 cgtagtagagcgtgtcgagcgcgaagttgccgctccactcgagcca 186430
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 553 tactccttccagggccgcgccaggtacgt 581
||||||||||| |||||||||| ||||||
Sbjct: 4032948 tactccttccacggccgcgccatgtacgt 4032920
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 29490150 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 29490091
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 29490090 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 29490053
Score = 71.9 bits (36), Expect = 6e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 756 ggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccg 815
|||||||||||||||||||||||||||||||| | ||||| |||||||||||| ||
Sbjct: 19909105 ggagttgccgaagatgaagtcgatggtgccggagatgacgcagttgcggaagaactggcg 19909164
Query: 816 ctgcgcgtgcgtgtacagcgtgtcctgg 843
| | |||||| |||||| |||||||||
Sbjct: 19909165 ccgggcgtgcacgtacagggtgtcctgg 19909192
Score = 44.1 bits (22), Expect = 0.12
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 407 cgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcgtct 466
|||||||||| || |||||||| ||||||||||| | ||| |||||| ||||||| |
Sbjct: 19908759 cgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagtagagcgtgt 19908818
Query: 467 cgaggccgaagtcgccgttcca 488
||| |||| |||||||||||
Sbjct: 19908819 tgagcgcgaattcgccgttcca 19908840
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 75.8 bits (38), Expect = 4e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
||||||||||||||| |||||||||| || |||||| ||||| |||||||||||||
Sbjct: 21721 gagttgccgaagatgtagtcgatggtccccgtcacctcgcagttccggaagaactgcctg 21662
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| |||||| |||||||||||||||||| || |||||
Sbjct: 21661 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 21624
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,418,833
Number of Sequences: 438736
Number of extensions: 1418833
Number of successful extensions: 14429
Number of sequences better than 0.5: 142
Number of HSP's better than 0.5 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12294
Number of HSP's gapped (non-prelim): 2083
length of query: 867
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 846
effective length of database: 2,791,206,460
effective search space: 2361360665160
effective search space used: 2361360665160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)