BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV721369.1|CV721369 YBH--03-N22.b1 Rice before heading y... 268 4e-069
gb|CV721381.1|CV721381 YBH--03-O15.b1 Rice before heading y... 268 4e-069
ref|XM_475280.1| Oryza sativa (japonica cultivar-group), p... 264 6e-068
dbj|AK110640.1| Oryza sativa (japonica cultivar-group) cDNA... 260 9e-067
gb|CV730829.1|CV730829 FLO--04-J06.b1 Rice flower lambda ph... 258 3e-066
gb|AC105769.2| Oryza sativa (japonica cultivar-group) chrom... 240 8e-061
gb|AC108502.3| Oryza sativa (japonica cultivar-group) chrom... 240 8e-061
gb|AACV01012241.1| Oryza sativa (japonica cultivar-group) c... 240 8e-061
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 240 8e-061
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 240 8e-061
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 240 8e-061
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 240 8e-061
gb|C19368.1|C19368 C19368 Rice panicle at ripening stage Or... 165 4e-038
gb|AQ257519.1|AQ257519 nbxb0018I16r CUGI Rice BAC Library O... 105 3e-020
gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3... 48 0.006
dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AP003575.2| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP005382.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibbe... 48 0.006
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
>gb|CV721369.1|CV721369 YBH--03-N22.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-N22, mRNA sequence
Length = 456
Score = 268 bits (135), Expect = 4e-069
Identities = 224/253 (88%), Gaps = 3/253 (1%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 370 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 311
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 310 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 251
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccg 456
|| |||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 250 gctctcaggcacatcttcggccgccccgacttgctgcaccggtacccgcacttcgccccg 191
Query: 457 cagtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcagg 516
|| |||||||| | ||| |||||||| |||| |||| ||||| ||||||||||| | |
Sbjct: 190 caatcgatggcgtaagcttgtccatgtggagcagta---gtctcgacgaggagcaggatg 134
Query: 517 acgacgagcgaga 529
||||||||||||
Sbjct: 133 gcgacgagcgaga 121
>gb|CV721381.1|CV721381 YBH--03-O15.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-O15, mRNA sequence
Length = 451
Score = 268 bits (135), Expect = 4e-069
Identities = 224/253 (88%), Gaps = 3/253 (1%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 363 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 304
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 303 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 244
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccg 456
|| |||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 243 gctctcaggcacatcttcggccgccccgacttgctgcaccggtacccgcacttcgccccg 184
Query: 457 cagtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcagg 516
|| |||||||| | ||| |||||||| |||| |||| ||||| ||||||||||| | |
Sbjct: 183 caatcgatggcgtaagcttgtccatgtggagcagta---gtctcgacgaggagcaggatg 127
Query: 517 acgacgagcgaga 529
||||||||||||
Sbjct: 126 gcgacgagcgaga 114
>ref|XM_475280.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 279
Score = 264 bits (133), Expect = 6e-068
Identities = 219/247 (88%), Gaps = 3/247 (1%)
Strand = Plus / Minus
Query: 283 gggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtcctcg 342
||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct: 275 gggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacgttctcg 216
Query: 343 ttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgccctc 402
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 215 ttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcatgctctc 156
Query: 403 aggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgcagtcg 462
||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||| |||
Sbjct: 155 aggcacatcttcggccgccccgacttgctgcaccggtacccgcacttcgccccgcaatcg 96
Query: 463 atggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcaggacgacg 522
||||| | ||| |||||||| |||| |||| ||||| ||||||||||| | | |||||
Sbjct: 95 atggcgtaagcttgtccatgtggagcagta---gtctcgacgaggagcaggatggcgacg 39
Query: 523 agcgaga 529
|||||||
Sbjct: 38 agcgaga 32
>dbj|AK110640.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C10, full
insert sequence
Length = 1012
Score = 260 bits (131), Expect = 9e-067
Identities = 223/253 (88%), Gaps = 3/253 (1%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 725 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 666
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 665 ttctcgttgccggaggtgcccggcggcacgcagccgcagcactggcagcaggtgccgcat 606
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccg 456
|| |||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 605 gctctcaggcacatcttcggccgccccgacttgctgcaccggtacccgcacttcgccccg 546
Query: 457 cagtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcagg 516
|| |||||||| | ||| |||||||| |||| |||| ||||| ||||||||||| | |
Sbjct: 545 caatcgatggcgtaagcttgtccatgtggagcagta---gtctcgacgaggagcaggatg 489
Query: 517 acgacgagcgaga 529
||||||||||||
Sbjct: 488 gcgacgagcgaga 476
>gb|CV730829.1|CV730829 FLO--04-J06.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-J06,
mRNA sequence
Length = 490
Score = 258 bits (130), Expect = 3e-066
Identities = 223/253 (88%), Gaps = 2/253 (0%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 367 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 308
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 307 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 248
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccg 456
|| |||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 247 gctctcaggcacatcttcggccgccccgacttgctgcaccggtacccgcacttcgccccg 188
Query: 457 cagtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcagg 516
|| |||||||| | ||| |||||||| |||| || | ||||| ||||||||||| | |
Sbjct: 187 caatcgatggcgtaagcttgtccatgtggagcag--atagtctcgacgaggagcaggatg 130
Query: 517 acgacgagcgaga 529
||||||||||||
Sbjct: 129 gcgacgagcgaga 117
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
complete sequence
Length = 106166
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 33315 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 33256
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 33255 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 33196
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 33195 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 33151
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
complete sequence
Length = 103458
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 69828 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 69769
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 69768 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 69709
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69708 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 69664
>gb|AACV01012241.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012241, whole
genome shotgun sequence
Length = 28966
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Plus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 20564 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 20623
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20624 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 20683
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20684 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 20728
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 2359815 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 2359756
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2359755 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 2359696
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2359695 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 2359651
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 3405053 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 3404994
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3404993 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 3404934
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3404933 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 3404889
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 20705366 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 20705307
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20705306 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 20705247
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20705246 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 20705202
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 240 bits (121), Expect = 8e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 21054450 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 21054391
Query: 337 tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcac 396
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21054390 ttctcgttgccggaggtgcccggcggcacgcagccgcagcgctggcagcaggtgccgcat 21054331
Query: 397 gccctcaggcacatcttgggccgccccgacttgctgcaccggtac 441
|| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 21054330 gctctcaggcacatcttcggccgccccgacttgctgcaccggtac 21054286
>gb|C19368.1|C19368 C19368 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10316_1A, mRNA sequence
Length = 308
Score = 165 bits (83), Expect = 4e-038
Identities = 164/190 (86%), Gaps = 4/190 (2%)
Strand = Plus / Minus
Query: 337 tcctcgttgccggaggt-gcccggcgggacgcagccgcagcgctggcagcaggtgccgca 395
||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 303 tcctcgttgccggagnttgcccggcggcangcagccgcagcgctggcagcaggtgccgca 244
Query: 396 cgccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgcc 455
|| ||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||
Sbjct: 243 tgctntcaggcacatcttcggccgccccgacttgctgcaccggtacccgcacttcgcccc 184
Query: 456 gcagtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcag 515
||| |||||||| | ||| |||||||| |||| |||| ||||| ||||||||||| |
Sbjct: 183 gcaatcgatggcgtaagcttgtccatgtggagcagta---gtctcgacgaggagcaggat 127
Query: 516 gacgacgagc 525
| ||||||||
Sbjct: 126 ggcgacgagc 117
>gb|AQ257519.1|AQ257519 nbxb0018I16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0018I16r, DNA sequence
Length = 623
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 277 gatcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg 336
||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 344 gatcaagggcacttgtggcggccgttgtgggtggtcatgttggcgtagcaggggcagacg 403
Query: 337 tcctcgttgccggaggtgccc 357
| |||||||||||||||||||
Sbjct: 404 ttctcgttgccggaggtgccc 424
>gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30180, mRNA sequence
Length = 313
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 289 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 242
>dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C07, full
insert sequence
Length = 433
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 315 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 268
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0528B02
Length = 144495
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 24861 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 24908
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1001_B06
Length = 134810
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 129553 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 129600
>gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013512, whole
genome shotgun sequence
Length = 35802
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 28625 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 28578
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 4550812 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 4550859
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 275115 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 275162
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 8882767 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 8882814
>gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibberellin-stimulated
protein (Gsr1) gene, complete cds
Length = 881
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 504 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 457
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || ||| ||||||| ||||||| ||||| |||||
Sbjct: 8859232 gtagcaggggcaggcgcccttgttgccgtaggtgccgggcggcacgca 8859279
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,115,711
Number of Sequences: 438736
Number of extensions: 1115711
Number of successful extensions: 9493
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9310
Number of HSP's gapped (non-prelim): 177
length of query: 683
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 662
effective length of database: 2,791,206,460
effective search space: 1847778676520
effective search space used: 1847778676520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)