BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 167 6e-039
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 159 1e-036
gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) c... 159 1e-036
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 159 1e-036
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 159 1e-036
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 159 1e-036
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 159 1e-036
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 159 1e-036
gb|AQ292177.1|AQ292177 nbxb0042J10r CUGI Rice BAC Library O... 103 7e-020
emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC O... 103 7e-020
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 103 7e-020
gb|AACV01025408.1| Oryza sativa (japonica cultivar-group) c... 103 7e-020
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 103 7e-020
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 103 7e-020
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 103 7e-020
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 103 7e-020
gb|AQ157545.1|AQ157545 nbxb0009N09r CUGI Rice BAC Library O... 44 0.057
gb|AACV01022836.1| Oryza sativa (japonica cultivar-group) c... 44 0.057
ref|NT_107117.1| Oryza sativa (japonica cultivar-group) 44 0.057
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.057
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.057
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.057
gb|AC135562.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.057
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.057
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 167 bits (84), Expect = 6e-039
Identities = 110/119 (92%)
Strand = Plus / Minus
Query: 191 tttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaa 250
||||||| |||||||| || |||||||| || |||||||||| |||||||||||||||||
Sbjct: 454621 tttgaagccctcggctgaaggcctgattgaatagcaatctcgtctggaactccgagacaa 454562
Query: 251 atgggaaccatgccagcacagccaccggnacgaagatgacaatccccatcaggtactca 309
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 454561 atgggaaccatgccagcaccgccaccgggacgaagatgacgatccccatcaggtactca 454503
Score = 167 bits (84), Expect = 6e-039
Identities = 110/119 (92%)
Strand = Plus / Minus
Query: 191 tttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaa 250
||||||| |||||||| || |||||||| || |||||||||| |||||||||||||||||
Sbjct: 373534 tttgaagccctcggctgaaggcctgattgaatagcaatctcgtctggaactccgagacaa 373475
Query: 251 atgggaaccatgccagcacagccaccggnacgaagatgacaatccccatcaggtactca 309
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 373474 atgggaaccatgccagcaccgccaccgggacgaagatgacgatccccatcaggtactca 373416
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 320 agagggccttcacggatccccagagcccaaacgccttgatgaccggtttacttgcttgag 379
|||| ||||| || |||||||| |||||||| ||||||| ||||||||||||||||| |
Sbjct: 454503 agagagccttgacagatccccacagcccaaatgccttgaccaccggtttacttgcttgcg 454444
Query: 380 atatctg 386
|||||||
Sbjct: 454443 atatctg 454437
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 320 agagggccttcacggatccccagagcccaaacgccttgatgaccggtttacttgcttgag 379
|||| ||||| || |||||||| |||||||| ||||||| ||||||||||||||||| |
Sbjct: 373416 agagagccttgacagatccccacagcccaaatgccttgaccaccggtttacttgcttgcg 373357
Query: 380 atatctg 386
|||||||
Sbjct: 373356 atatctg 373350
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Plus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 38730 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 38789
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 38790 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 38849
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 38850 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 38909
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 38910 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 38956
>gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013161, whole
genome shotgun sequence
Length = 8989
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Minus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 1451 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 1392
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 1391 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 1332
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 1331 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 1272
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 1271 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 1225
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Plus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 11199 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 11258
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 11259 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 11318
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 11319 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 11378
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 11379 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 11425
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Plus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 121593 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 121652
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 121653 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 121712
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 121713 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 121772
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 121773 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 121819
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Plus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 3910592 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 3910651
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 3910652 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 3910711
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 3910712 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 3910771
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 3910772 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 3910818
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Plus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 3910592 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 3910651
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 3910652 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 3910711
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 3910712 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 3910771
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 3910772 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 3910818
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 159 bits (80), Expect = 1e-036
Identities = 190/227 (83%)
Strand = Plus / Plus
Query: 160 tgcttcttgccgccagccaagatccgagagatttgaaggcctcggctaaatgcctgatta 219
|||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| ||
Sbjct: 4077940 tgcttcttcccgcctgccaagatgcgggagatctggaggcctcggctgaaggcctggttg 4077999
Query: 220 aaaagcaatctcgcctggaactccgagacaaatgggaaccatgccagcacagccaccggn 279
|| |||| |||| ||||||||| ||||| || |||||||| |||||||| || || ||
Sbjct: 4078000 aagagcagcctcgtctggaactcggagacgaaggggaaccacgccagcacggcgacgggg 4078059
Query: 280 acgaagatgacaatccccatcaggtactcataccccctagagagggccttcacggatccc 339
|||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct: 4078060 acgaagatgaggatccccatcaggtactcgtatcccctcgagagggccttgacggatccc 4078119
Query: 340 cagagcccaaacgccttgatgaccggtttacttgcttgagatatctg 386
|| ||||| || ||||| | ||||| || || ||||||||||||||
Sbjct: 4078120 catagcccgaaggccttcaccaccggcttgctggcttgagatatctg 4078166
>gb|AQ292177.1|AQ292177 nbxb0042J10r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042J10r, DNA sequence
Length = 800
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 284 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 343
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 344 catgccagcaccgccaccgggacgaag 370
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 140383
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 24701 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 24760
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 24761 catgccagcaccgccaccgggacgaag 24787
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 889130 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 889189
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 889190 catgccagcaccgccaccgggacgaag 889216
>gb|AACV01025408.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025408, whole
genome shotgun sequence
Length = 3895
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 2622 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 2563
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 2562 catgccagcaccgccaccgggacgaag 2536
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 1716341 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 1716400
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 1716401 catgccagcaccgccaccgggacgaag 1716427
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 20899987 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 20900046
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 20900047 catgccagcaccgccaccgggacgaag 20900073
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 24717544 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 24717603
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 24717604 catgccagcaccgccaccgggacgaag 24717630
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 103 bits (52), Expect = 7e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 199 cctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaac 258
|||||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||
Sbjct: 24645750 cctcggctgaaggcctgattgaatagcaatcttgtctggaacttcgagacaaatgggaac 24645809
Query: 259 catgccagcacagccaccggnacgaag 285
||||||||||| |||||||| ||||||
Sbjct: 24645810 catgccagcaccgccaccgggacgaag 24645836
>gb|AQ157545.1|AQ157545 nbxb0009N09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0009N09r, DNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
|||||||| || |||||||||| |||||||||||
Sbjct: 470 gcctgattgaatagcaatctcgtctggaactccg 503
>gb|AACV01022836.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022836, whole
genome shotgun sequence
Length = 29321
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
|||||||| || |||||||||| |||||||||||
Sbjct: 12579 gcctgattgaatagcaatctcgtctggaactccg 12546
>ref|NT_107117.1| Oryza sativa (japonica cultivar-group)
Length = 432142
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
|||||||| || |||||||||| |||||||||||
Sbjct: 284223 gcctgattgaatagcaatctcgtctggaactccg 284256
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
|||||||| || |||||||||| |||||||||||
Sbjct: 1209513 gcctgattgaatagcaatctcgtctggaactccg 1209546
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
|||||||| || |||||||||| |||||||||||
Sbjct: 9064557 gcctgattgaatagcaatctcgtctggaactccg 9064590
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
|||||||| || |||||||||| |||||||||||
Sbjct: 10127983 gcctgattgaatagcaatctcgtctggaactccg 10128016
>gb|AC135562.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0087P19, complete sequence
Length = 172066
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
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Sbjct: 24147 gcctgattgaatagcaatctcgtctggaactccg 24180
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 44.1 bits (22), Expect = 0.057
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 211 gcctgattaaaaagcaatctcgcctggaactccg 244
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Sbjct: 10199680 gcctgattgaatagcaatctcgtctggaactccg 10199713
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 447,207
Number of Sequences: 438736
Number of extensions: 447207
Number of successful extensions: 9331
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9145
Number of HSP's gapped (non-prelim): 186
length of query: 406
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 386
effective length of database: 2,791,645,196
effective search space: 1077575045656
effective search space used: 1077575045656
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)