BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838024.2.1
(529 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF324737.1|CF324737 JMT1--01-F11.g1 AtJMT-overexpressing... 170 5e-040
gb|CV722395.1|CV722395 YTPSP--01-A08.b1 TPSP-overexpression... 170 5e-040
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 170 5e-040
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 170 5e-040
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 170 5e-040
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 170 5e-040
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 170 5e-040
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 170 5e-040
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 170 5e-040
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 170 5e-040
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 170 5e-040
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 170 5e-040
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 170 5e-040
gb|CB658472.1|CB658472 OSJNEc14I12.f OSJNEc Oryza sativa (j... 163 1e-037
gb|CF324739.1|CF324739 JMT1--01-F13.g1 AtJMT-overexpressing... 163 1e-037
gb|AU067866.1|AU067866 AU067866 Rice callus Oryza sativa (j... 157 7e-036
gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing ... 157 7e-036
gb|D39780.1|D39780 RICS1371A Rice shoot Oryza sativa (japon... 149 2e-033
gb|D39807.1|D39807 RICS1411A Rice shoot Oryza sativa (japon... 149 2e-033
gb|D24406.1|D24406 RICR1848A Rice root Oryza sativa (japoni... 119 2e-024
gb|AU184071.1|AU184071 AU184071 Rice root Oryza sativa (jap... 113 1e-022
gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japon... 103 9e-020
dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA... 90 1e-015
gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) c... 90 1e-015
ref|XM_473793.1| Oryza sativa (japonica cultivar-group), p... 90 1e-015
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 90 1e-015
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 90 1e-015
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 90 1e-015
emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromoso... 90 1e-015
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 90 1e-015
ref|XM_473792.1| Oryza sativa (japonica cultivar-group), p... 88 6e-015
gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (j... 84 9e-014
gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (j... 84 9e-014
gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (j... 84 9e-014
gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (j... 84 9e-014
gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (j... 84 9e-014
dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA... 84 9e-014
gb|CB652674.1|CB652674 OSJNEc02O21.f OSJNEc Oryza sativa (j... 82 3e-013
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 82 3e-013
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 82 3e-013
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 82 3e-013
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 82 3e-013
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 82 3e-013
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 82 3e-013
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 82 3e-013
gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (... 80 1e-012
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 80 1e-012
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|D24580.1|D24580 RICR2204A Rice root Oryza sativa (japoni... 72 3e-010
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 72 3e-010
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 72 3e-010
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 72 3e-010
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 72 3e-010
gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (... 66 2e-008
dbj|AK061126.1| Oryza sativa (japonica cultivar-group) cDNA... 64 8e-008
dbj|AK104060.1| Oryza sativa (japonica cultivar-group) cDNA... 64 8e-008
dbj|AK119538.1| Oryza sativa (japonica cultivar-group) cDNA... 64 8e-008
gb|AC113930.2| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
ref|NM_187656.1| Oryza sativa (japonica cultivar-group), p... 64 8e-008
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 64 8e-008
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
gb|AQ578490.1|AQ578490 nbxb0093C13r CUGI Rice BAC Library O... 62 3e-007
gb|AY873214.1|AY873214 04ET3_387_C_072_000_001C08 Oryza sat... 62 3e-007
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 62 3e-007
gb|CB648710.1|CB648710 OSJNEb12D18.f OSJNEb Oryza sativa (j... 62 3e-007
gb|CB652809.1|CB652809 OSJNEc03D09.r OSJNEc Oryza sativa (j... 62 3e-007
gb|CB653528.1|CB653528 OSJNEc04K08.r OSJNEc Oryza sativa (j... 62 3e-007
gb|CB661481.1|CB661481 OSJNEd04G16.f OSJNEd Oryza sativa (j... 62 3e-007
gb|CB662584.1|CB662584 OSJNEd06M04.f OSJNEd Oryza sativa (j... 62 3e-007
gb|CB662585.1|CB662585 OSJNEd06M04.r OSJNEd Oryza sativa (j... 62 3e-007
gb|CB668487.1|CB668487 OSJNEd16F20.f OSJNEd Oryza sativa (j... 62 3e-007
gb|CF308277.1|CF308277 ABF--02-A16.b1 ABF3-overexpressing t... 62 3e-007
dbj|AP003839.1| Oryza sativa (japonica cultivar-group) chro... 62 3e-007
dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 62 3e-007
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 62 3e-007
dbj|AP004784.3| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|AACV01013814.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
gb|AACV01016188.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA 62 3e-007
dbj|AP004299.2| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 62 3e-007
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|C25353.1|C25353 C25353 Rice shoot Oryza sativa (japonica... 60 1e-006
dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chro... 60 1e-006
dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AK111340.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AP004674.2| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-006
ref|XM_478515.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-006
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 60 1e-006
emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromoso... 60 1e-006
gb|C28350.1|C28350 C28350 Rice callus cDNA Oryza sativa (ja... 58 5e-006
gb|AU183242.1|AU183242 AU183242 Rice cDNA from immature lea... 58 5e-006
gb|AU183250.1|AU183250 AU183250 Rice cDNA from immature lea... 58 5e-006
gb|AU183876.1|AU183876 AU183876 Rice cDNA from immature lea... 58 5e-006
gb|AU222632.1|AU222632 AU222632 Rice cDNA from immature lea... 58 5e-006
gb|AU225192.1|AU225192 AU225192 Oryza sativa Koshihikari pi... 58 5e-006
gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (j... 58 5e-006
gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (j... 58 5e-006
gb|BP432965.1|BP432965 BP432965 Oryza sativa (japonica cult... 58 5e-006
gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing... 58 5e-006
dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
dbj|AP004026.3| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
dbj|AP003989.4| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
gb|AACV01005666.1| Oryza sativa (japonica cultivar-group) c... 58 5e-006
ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA 58 5e-006
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 58 5e-006
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
gb|C25186.1|C25186 C25186 Rice shoot Oryza sativa (japonica... 56 2e-005
dbj|AP004872.2| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP005398.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AACV01003896.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|C27146.1|C27146 C27146 Rice callus cDNA Oryza sativa (ja... 54 8e-005
gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O1... 54 8e-005
gb|AACV01022039.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
ref|NM_197613.1| Oryza sativa (japonica cultivar-group) put... 54 8e-005
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 54 8e-005
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|AU063923.1|AU063923 AU063923 Rice panicle at flowering s... 52 3e-004
gb|AU222683.1|AU222683 AU222683 Rice shoot Oryza sativa (ja... 52 3e-004
gb|CB651562.1|CB651562 OSJNEb16J04.f OSJNEb Oryza sativa (j... 52 3e-004
gb|CB655114.1|CB655114 OSJNEc08D08.f OSJNEc Oryza sativa (j... 52 3e-004
dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
gb|AACV01010434.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|XM_473787.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
gb|AQ159307.1|AQ159307 nbxb0013F13r CUGI Rice BAC Library O... 50 0.001
gb|AQ329113.1|AQ329113 nbxb0044M08r CUGI Rice BAC Library O... 50 0.001
gb|AQ575578.1|AQ575578 nbxb0087F21r CUGI Rice BAC Library O... 50 0.001
gb|AQ795518.1|AQ795518 nbxb0056M12r CUGI Rice BAC Library O... 50 0.001
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 50 0.001
dbj|AP004644.1| Oryza sativa (japonica cultivar-group) chro... 50 0.001
dbj|AP004657.2| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP005249.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01005750.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01017705.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|XM_480899.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|DU168821.1|DU168821 UCDRdSpm767_3.1 UCD RdSpm Rice Inser... 48 0.005
gb|DU169063.1|DU169063 UCDRdSpm768_3.1 UCD RdSpm Rice Inser... 48 0.005
gb|C25181.1|C25181 C25181 Rice shoot Oryza sativa (japonica... 48 0.005
ref|XM_480898.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.005
dbj|AP003907.3| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|D39971.1|D39971 RICS1669A Rice shoot Oryza sativa (japon... 44 0.075
gb|AU066184.1|AU066184 AU066184 Rice shoot Oryza sativa (ja... 44 0.075
gb|AU066253.1|AU066253 AU066253 Rice shoot Oryza sativa (ja... 44 0.075
gb|AU161551.1|AU161551 AU161551 Rice shoot Oryza sativa (ja... 44 0.075
gb|AU164201.1|AU164201 AU164201 Rice panicle (longer than 1... 44 0.075
gb|AU222867.1|AU222867 AU222867 Rice shoot Oryza sativa (ja... 44 0.075
gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing... 44 0.075
dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.075
dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.075
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 44 0.075
dbj|AP004995.3| Oryza sativa (japonica cultivar-group) geno... 44 0.075
gb|AACV01013383.1| Oryza sativa (japonica cultivar-group) c... 44 0.075
gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) c... 44 0.075
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 44 0.075
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.075
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.075
emb|AL713906.3|CNS07YQ6 Oryza sativa chromosome 12, . BAC O... 42 0.30
ref|NT_107155.1| Oryza sativa (japonica cultivar-group) 42 0.30
gb|AACV01024019.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.30
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
>gb|CF324737.1|CF324737 JMT1--01-F11.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-F11, mRNA sequence
Length = 302
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 48 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 107
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 108 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 167
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 168 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 221
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 453 caccagttcgacctctggttcgacccctccgccgactaccacacctaca 501
||||||||| |||| |||||||||||| ||||||||| |||||||||||
Sbjct: 248 caccagttctacctgtggttcgaccccaccgccgacttccacacctaca 296
>gb|CV722395.1|CV722395 YTPSP--01-A08.b1 TPSP-overexpression transgenic rice yeast two
hybrid lambda phage cDNA library (YTPSP) Oryza sativa
(japonica cultivar-group) cDNA clone YTPSP--01-A08, mRNA
sequence
Length = 514
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 207 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 266
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 267 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 326
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 327 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 380
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 403 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 462
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 463 tcgaccccaccgccgacttccacacctacaagatcatctggaa 505
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full
insert sequence
Length = 1127
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 212 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 271
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 272 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 331
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 332 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 385
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 408 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 467
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 468 tcgaccccaccgccgacttccacacctacaagatcatctggaa 510
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full
insert sequence
Length = 1111
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 217 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 276
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 277 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 336
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 337 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 390
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 413 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 472
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 473 tcgaccccaccgccgacttccacacctacaagatcatctggaa 515
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 61994 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 62053
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 62054 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 62113
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 62114 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 62167
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 62190 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 62249
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 62250 tcgaccccaccgccgacttccacacctacaagatcatctggaa 62292
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 119016 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 118957
Query: 510 tggaaccc 517
||||||||
Sbjct: 118956 tggaaccc 118949
>gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002670, whole
genome shotgun sequence
Length = 40539
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 5601 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 5660
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 5661 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 5720
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5721 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 5774
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 5797 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 5856
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 5857 tcgaccccaccgccgacttccacacctacaagatcatctggaa 5899
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1111
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 217 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 276
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 277 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 336
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 337 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 390
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 413 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 472
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 473 tcgaccccaccgccgacttccacacctacaagatcatctggaa 515
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA
Length = 1127
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 212 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 271
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 272 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 331
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 332 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 385
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 408 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 467
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 468 tcgaccccaccgccgacttccacacctacaagatcatctggaa 510
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan
endotransglycosylase-related protein 5, complete cds
Length = 1280
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 208 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 267
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 268 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 327
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 328 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 381
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 404 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 463
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 464 tcgaccccaccgccgacttccacacctacaagatcatctggaa 506
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 8089411 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 8089470
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 8089471 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 8089530
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 8089531 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 8089584
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 8089607 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 8089666
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 8089667 tcgaccccaccgccgacttccacacctacaagatcatctggaa 8089709
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 8146433 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 8146374
Query: 510 tggaaccc 517
||||||||
Sbjct: 8146373 tggaaccc 8146366
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 486 gactaccacacctacaccatcatctggaacccg 518
|||| ||| ||||||||||||||||||||||||
Sbjct: 8255893 gacttccatacctacaccatcatctggaacccg 8255925
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 465 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 516
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 8250065 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 8250116
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Minus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 10685594 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 10685535
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 10685534 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 10685475
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 10685474 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 10685421
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 10685398 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 10685339
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 10685338 tcgaccccaccgccgacttccacacctacaagatcatctggaa 10685296
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Minus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 35887315 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 35887256
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 35887255 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 35887196
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 35887195 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 35887142
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 35887119 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 35887060
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 35887059 tcgaccccaccgccgacttccacacctacaagatcatctggaa 35887017
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 170 bits (86), Expect = 5e-040
Identities = 152/174 (87%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 8321885 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 8321944
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 8321945 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 8322004
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 8322005 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 8322058
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 8322081 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 8322140
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 8322141 tcgaccccaccgccgacttccacacctacaagatcatctggaa 8322183
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 8378907 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 8378848
Query: 510 tggaaccc 517
||||||||
Sbjct: 8378847 tggaaccc 8378840
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 486 gactaccacacctacaccatcatctggaacccg 518
|||| ||| ||||||||||||||||||||||||
Sbjct: 8488367 gacttccatacctacaccatcatctggaacccg 8488399
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 465 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 516
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 8482539 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 8482590
>gb|CB658472.1|CB658472 OSJNEc14I12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I12 5', mRNA sequence
Length = 597
Score = 163 bits (82), Expect = 1e-037
Identities = 151/174 (86%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 183 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 242
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
| |||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 243 aacgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 302
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 303 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 356
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 379 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 438
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 439 tcgaccccaccgccgacttccacacctacaagatcatctggaa 481
>gb|CF324739.1|CF324739 JMT1--01-F13.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-F13, mRNA sequence
Length = 251
Score = 163 bits (82), Expect = 1e-037
Identities = 151/174 (86%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 48 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 107
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 108 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 167
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
|| || ||||| |||||||| ||| ||||||||||||| |||||||||||||||
Sbjct: 168 tcctccggcgagggcgacggccactacgagatcgacatcgagttcatgggcaac 221
>gb|AU067866.1|AU067866 AU067866 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10287_7A, mRNA sequence
Length = 408
Score = 157 bits (79), Expect = 7e-036
Identities = 145/167 (86%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 239 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 298
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||
Sbjct: 299 agcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttctacctc 358
Query: 336 tcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcat 382
|| || ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 359 tcctccggcgagggcgacggccacgacgagatcgacatcgagttcat 405
>gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-F05, mRNA sequence
Length = 497
Score = 157 bits (79), Expect = 7e-036
Identities = 112/123 (91%)
Strand = Plus / Plus
Query: 267 ggcgagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgc 326
||||||||||||||||||||||||||| || |||||||||||||||||||||| | | |
Sbjct: 9 ggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctcc 68
Query: 327 ttctacctctcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggc 386
||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 69 ttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggc 128
Query: 387 aac 389
|||
Sbjct: 129 aac 131
Score = 125 bits (63), Expect = 3e-026
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 154 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 213
Query: 472 tcgacccctccgccgactaccacacctacaccatcatctggaa 514
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 214 tcgaccccaccgccgacttccacacctacaagatcatctggaa 256
>gb|D39780.1|D39780 RICS1371A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 363
Score = 149 bits (75), Expect = 2e-033
Identities = 108/119 (90%)
Strand = Plus / Plus
Query: 271 agttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttct 330
||||||||||||||||||||||| || |||||||||||||||||||||| | | |||||
Sbjct: 1 agttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttct 60
Query: 331 acctctcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
||||||| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 61 acctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 119
Score = 119 bits (60), Expect = 2e-024
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 435 ggcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccac 494
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 165 ggcgacggcaagaaggagcaccagttctacctctggttcgaccccaccgccgacttccac 224
Query: 495 acctacaccatcatctggaa 514
||||||| |||||||||||
Sbjct: 225 acctacaagatcatctggaa 244
>gb|D39807.1|D39807 RICS1411A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 213
Score = 149 bits (75), Expect = 2e-033
Identities = 108/119 (90%)
Strand = Plus / Plus
Query: 271 agttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttct 330
||||||||||||||||||||||| || |||||||||||||||||||||| | | |||||
Sbjct: 1 agttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttct 60
Query: 331 acctctcgtcgggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaac 389
||||||| || ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 61 acctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 119
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 412 tgaacacgaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 471
||||||| ||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 142 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 201
Query: 472 tcgacccc 479
||||||||
Sbjct: 202 tcgacccc 209
>gb|D24406.1|D24406 RICR1848A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1848_1A, mRNA sequence
Length = 310
Score = 119 bits (60), Expect = 2e-024
Identities = 126/149 (84%)
Strand = Plus / Plus
Query: 216 ctggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttc 275
|||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||||||
Sbjct: 162 ctggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttc 221
Query: 276 agcgtccagatgaagctcatccccggcaactccgccggcaccgtctcgtgcttctacctc 335
|||||||||||||||||| || ||||||||||| |||||||||| | | ||||||||||
Sbjct: 222 agcgtccagatgaagctcgtcggcggcaactccgncggcaccgtcacctccttctacctc 281
Query: 336 tcgtcgggcgacggcgacgggcacgacga 364
| || ||||| |||||||| ||||||||
Sbjct: 282 tnctccggcgagggcgacggncacgacga 310
>gb|AU184071.1|AU184071 AU184071 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0883, mRNA sequence
Length = 408
Score = 113 bits (57), Expect = 1e-022
Identities = 149/176 (84%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 217 tggaccgcagctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttca 276
||||||| |||||||| |||| |||| ||||||| | ||||||| |||||||||||
Sbjct: 200 tggaccggagctccgggtccgggttcacctccaaggacacctacctgttcggcgagttca 259
Query: 277 gcgtccagatgaagctcatc-cccggcaactccgccggcaccgtctcgtgcttctacctc 335
||||||||||||||||| || | || ||||||||||||||||| | | ||||||||||
Sbjct: 260 gcgtccagatgaagctcgtcggcgggnaactccgccggcaccgtaacctccttctacctc 319
Query: 336 tcgtcgggcgacggcg-acgggcacgacg-agatcgacatggagttcatgggcaac 389
|| || ||||| |||| |||| ||||||| |||||||||| |||||||||||||||
Sbjct: 320 tcctccggcgagggcgaacggccacgacgaagatcgacatcgagttcatgggcaac 375
>gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 371
Score = 103 bits (52), Expect = 9e-020
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 443 caagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacac 502
||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 1 caagaaggagcaccagttctacctctggttcgaccccaccgccgacttccacacctacaa 60
Query: 503 catcatctggaa 514
|||||||||||
Sbjct: 61 gatcatctggaa 72
>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full
insert sequence
Length = 1234
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 497 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 556
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 557 ctggaaccc 565
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 278 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 337
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 338 gaagctcgtccccggc 353
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 404 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 445
>gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010438, whole
genome shotgun sequence
Length = 16114
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 6366 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 6425
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 6426 ctggaaccc 6434
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 9736 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 9677
Query: 510 tggaaccc 517
||||||||
Sbjct: 9676 tggaaccc 9669
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 5992 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 6051
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 6052 gaagctcgtccccggc 6067
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 9829 cacgacgagatcgacctggagttcctcggcaacg 9796
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 6273 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 6314
>ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 966
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 429 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 488
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 489 ctggaaccc 497
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 210 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 269
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 270 gaagctcgtccccggc 285
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 336 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 377
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 453420 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 453361
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 453360 ctggaaccc 453352
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 450051 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 450110
Query: 510 tggaaccc 517
||||||||
Sbjct: 450111 tggaaccc 450118
Score = 71.9 bits (36), Expect = 3e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 413441 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 413382
Query: 510 tgga 513
||||
Sbjct: 413381 tgga 413378
Score = 52.0 bits (26), Expect = 3e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| |||||||||
Sbjct: 404930 cacgacgagatcgacctggagttcctgggcaacg 404897
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 453794 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 453735
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 453734 gaagctcgtccccggc 453719
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 453513 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 453472
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 449958 cacgacgagatcgacctggagttcctcggcaacg 449991
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 8272951 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 8272892
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 8272891 ctggaaccc 8272883
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 8269581 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 8269640
Query: 510 tggaaccc 517
||||||||
Sbjct: 8269641 tggaaccc 8269648
Score = 71.9 bits (36), Expect = 3e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 8235530 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 8235471
Query: 510 tgga 513
||||
Sbjct: 8235470 tgga 8235467
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 460 tcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
||||||| |||||||||||| ||||||||| |||||||||| || | ||||||||||
Sbjct: 9886521 tcgacctgtggttcgaccccaccgccgacttccacacctacgccgtgctctggaaccc 9886578
Score = 52.0 bits (26), Expect = 3e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| |||||||||
Sbjct: 8226927 cacgacgagatcgacctggagttcctgggcaacg 8226894
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 8273325 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 8273266
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 8273265 gaagctcgtccccggc 8273250
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 8273044 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 8273003
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 8269488 cacgacgagatcgacctggagttcctcggcaacg 8269521
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 27417050 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 27416991
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 27416990 ctggaaccc 27416982
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 27413680 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 27413739
Query: 510 tggaaccc 517
||||||||
Sbjct: 27413740 tggaaccc 27413747
Score = 71.9 bits (36), Expect = 3e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 27379629 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 27379570
Query: 510 tgga 513
||||
Sbjct: 27379569 tgga 27379566
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 460 tcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
||||||| |||||||||||| ||||||||| |||||||||| || | ||||||||||
Sbjct: 29030620 tcgacctgtggttcgaccccaccgccgacttccacacctacgccgtgctctggaaccc 29030677
Score = 52.0 bits (26), Expect = 3e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| |||||||||
Sbjct: 27371026 cacgacgagatcgacctggagttcctgggcaacg 27370993
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 27417424 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 27417365
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 27417364 gaagctcgtccccggc 27417349
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 27417143 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 27417102
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 27413587 cacgacgagatcgacctggagttcctcggcaacg 27413620
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
complete sequence
Length = 129037
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 32621 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 32562
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 32561 ctggaaccc 32553
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 29252 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 29311
Query: 510 tggaaccc 517
||||||||
Sbjct: 29312 tggaaccc 29319
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 32995 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 32936
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 32935 gaagctcgtccccggc 32920
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 32714 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 32673
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 29159 cacgacgagatcgacctggagttcctcggcaacg 29192
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 89.7 bits (45), Expect = 1e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 449 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 508
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 30556913 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 30556854
Query: 509 ctggaaccc 517
|||||||||
Sbjct: 30556853 ctggaaccc 30556845
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 30553544 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 30553603
Query: 510 tggaaccc 517
||||||||
Sbjct: 30553604 tggaaccc 30553611
Score = 71.9 bits (36), Expect = 3e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 30516931 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 30516872
Query: 510 tgga 513
||||
Sbjct: 30516871 tgga 30516868
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 460 tcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
||||||| |||||||||||| ||||||||| |||||||||| || | ||||||||||
Sbjct: 32180524 tcgacctgtggttcgaccccaccgccgacttccacacctacgccgtgctctggaaccc 32180581
Score = 52.0 bits (26), Expect = 3e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| |||||||||
Sbjct: 30508420 cacgacgagatcgacctggagttcctgggcaacg 30508387
Score = 48.1 bits (24), Expect = 0.005
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 227 ctccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagat 286
||||||| |||| ||| | |||||| | |||| ||| | ||||||||||||| | ||||
Sbjct: 30557287 ctccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagat 30557228
Query: 287 gaagctcatccccggc 302
||||||| ||||||||
Sbjct: 30557227 gaagctcgtccccggc 30557212
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||| ||||||
Sbjct: 30557006 gcacgacgagatcgacttcgagttcctggggaacgtgagcgg 30556965
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 30553451 cacgacgagatcgacctggagttcctcggcaacg 30553484
>ref|XM_473792.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 570
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 418 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 477
Query: 510 tggaaccc 517
||||||||
Sbjct: 478 tggaaccc 485
Score = 44.1 bits (22), Expect = 0.075
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaacg 390
||||||||||||||| |||||||| | |||||||
Sbjct: 325 cacgacgagatcgacctggagttcctcggcaacg 358
>gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11H13 5', mRNA sequence
Length = 701
Score = 83.8 bits (42), Expect = 9e-014
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 248 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 307
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcg 341
|||||| |||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 308 aagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcg 361
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 373 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 414
>gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15H04 5', mRNA sequence
Length = 787
Score = 83.8 bits (42), Expect = 9e-014
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 248 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 307
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcg 341
|||||| |||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 308 aagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcg 361
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 373 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 414
>gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09H12 5', mRNA sequence
Length = 782
Score = 83.8 bits (42), Expect = 9e-014
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 248 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 307
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcg 341
|||||| |||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 308 aagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcg 361
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 373 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 414
>gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09P24 5', mRNA sequence
Length = 817
Score = 83.8 bits (42), Expect = 9e-014
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 241 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 300
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcg 341
|||||| |||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 301 aagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcg 354
Score = 44.1 bits (22), Expect = 0.075
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | ||||| |||| |||||||||||
Sbjct: 366 gcacgacgagatcgacttctagttcctggggaacgcgagcgg 407
>gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15H06 5', mRNA sequence
Length = 695
Score = 83.8 bits (42), Expect = 9e-014
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 242 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 301
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcg 341
|||||| |||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 302 aagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcg 355
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 367 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 408
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full
insert sequence
Length = 1101
Score = 83.8 bits (42), Expect = 9e-014
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 260 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 319
Query: 288 aagctcatccccggcaactccgccggcaccgtctcgtgcttctacctctcgtcg 341
|||||| |||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 320 aagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcg 373
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 385 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 426
>gb|CB652674.1|CB652674 OSJNEc02O21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02O21 5', mRNA sequence
Length = 625
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 199 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 258
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 259 aagctcgtccccggcaactccgccggcaccgtc 291
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 414 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 455
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 6226979 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 6227038
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 6227039 aagctcgtccccggcaactccgccggcaccgtc 6227071
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 6220292 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 6220351
Query: 510 tggaaccc 517
||||||||
Sbjct: 6220352 tggaaccc 6220359
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 6215253 cagatcaagctcgtccccggcaactccgccggcaccgtc 6215291
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 6239378 aagctcgtccccggcaactccgccggcaccgtc 6239346
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 6227194 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 6227235
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 6215552 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 6215611
Query: 510 tggaaccc 517
||||||||
Sbjct: 6215612 tggaaccc 6215619
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 162060 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 162119
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 162120 aagctcgtccccggcaactccgccggcaccgtc 162152
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 155373 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 155432
Query: 510 tggaaccc 517
||||||||
Sbjct: 155433 tggaaccc 155440
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 150334 cagatcaagctcgtccccggcaactccgccggcaccgtc 150372
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 162275 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 162316
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 150633 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 150692
Query: 510 tggaaccc 517
||||||||
Sbjct: 150693 tggaaccc 150700
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 69269 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 69328
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 69329 aagctcgtccccggcaactccgccggcaccgtc 69361
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 62582 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 62641
Query: 510 tggaaccc 517
||||||||
Sbjct: 62642 tggaaccc 62649
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 57543 cagatcaagctcgtccccggcaactccgccggcaccgtc 57581
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 81668 aagctcgtccccggcaactccgccggcaccgtc 81636
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 69484 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 69525
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 57842 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 57901
Query: 510 tggaaccc 517
||||||||
Sbjct: 57902 tggaaccc 57909
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 34839 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 34780
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 34779 aagctcgtccccggcaactccgccggcaccgtc 34747
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 41526 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 41467
Query: 510 tggaaccc 517
||||||||
Sbjct: 41466 tggaaccc 41459
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 46565 cagatcaagctcgtccccggcaactccgccggcaccgtc 46527
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 22435 aagctcgtccccggcaactccgccggcaccgtc 22467
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 34624 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 34583
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 46266 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 46207
Query: 510 tggaaccc 517
||||||||
Sbjct: 46206 tggaaccc 46199
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 10139812 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 10139871
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 10139872 aagctcgtccccggcaactccgccggcaccgtc 10139904
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 10133125 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 10133184
Query: 510 tggaaccc 517
||||||||
Sbjct: 10133185 tggaaccc 10133192
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 10128086 cagatcaagctcgtccccggcaactccgccggcaccgtc 10128124
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 10152216 aagctcgtccccggcaactccgccggcaccgtc 10152184
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 10140027 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 10140068
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 10128385 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 10128444
Query: 510 tggaaccc 517
||||||||
Sbjct: 10128445 tggaaccc 10128452
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 27838549 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 27838608
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 27838609 aagctcgtccccggcaactccgccggcaccgtc 27838641
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 27831862 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 27831921
Query: 510 tggaaccc 517
||||||||
Sbjct: 27831922 tggaaccc 27831929
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 27826823 cagatcaagctcgtccccggcaactccgccggcaccgtc 27826861
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 467 ctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
||||||||||||| ||| || |||||||| |||||||||| ||||||||||
Sbjct: 12967261 ctggttcgaccccaccgacggctaccacaactacaccatcttctggaaccc 12967311
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 27850953 aagctcgtccccggcaactccgccggcaccgtc 27850921
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 27838764 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 27838805
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 27827122 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 27827181
Query: 510 tggaaccc 517
||||||||
Sbjct: 27827182 tggaaccc 27827189
Score = 44.1 bits (22), Expect = 0.075
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 464 cctctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||||||||| | ||||||| ||| |||| ||||| ||||||||||
Sbjct: 7141174 cctctggttcgaccccgctgccgacttccatgactactccatcctctggaaccc 7141121
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaac 389
||||||||||||||| | |||||| ||||||||
Sbjct: 12967151 cacgacgagatcgacttcgagttcctgggcaac 12967183
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 228 tccggcgccggcttcaactccaagaagcagtacctgtacggcgagttcagcgtccagatg 287
|||||| |||||||| | |||||||| ||||||||||||||| ||| | | |||||
Sbjct: 28761494 tccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcagatc 28761553
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 28761554 aagctcgtccccggcaactccgccggcaccgtc 28761586
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 28754807 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 28754866
Query: 510 tggaaccc 517
||||||||
Sbjct: 28754867 tggaaccc 28754874
Score = 61.9 bits (31), Expect = 3e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 282 cagatgaagctcatccccggcaactccgccggcaccgtc 320
||||| |||||| ||||||||||||||||||||||||||
Sbjct: 28749768 cagatcaagctcgtccccggcaactccgccggcaccgtc 28749806
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 467 ctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
||||||||||||| ||| || |||||||| |||||||||| ||||||||||
Sbjct: 13230512 ctggttcgaccccaccgacggctaccacaactacaccatcttctggaaccc 13230562
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 288 aagctcatccccggcaactccgccggcaccgtc 320
|||||| ||||||||||||||||||||||||||
Sbjct: 28773893 aagctcgtccccggcaactccgccggcaccgtc 28773861
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 356 gcacgacgagatcgacatggagttcatgggcaacgcgagcgg 397
|||||||||||||||| | |||||| |||| |||||||||||
Sbjct: 28761709 gcacgacgagatcgacttcgagttcctggggaacgcgagcgg 28761750
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 28750067 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 28750126
Query: 510 tggaaccc 517
||||||||
Sbjct: 28750127 tggaaccc 28750134
Score = 44.1 bits (22), Expect = 0.075
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 464 cctctggttcgacccctccgccgactaccacacctacaccatcatctggaaccc 517
|||||||||||||||| | ||||||| ||| |||| ||||| ||||||||||
Sbjct: 7156118 cctctggttcgaccccgctgccgacttccatgactactccatcctctggaaccc 7156065
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 357 cacgacgagatcgacatggagttcatgggcaac 389
||||||||||||||| | |||||| ||||||||
Sbjct: 13230402 cacgacgagatcgacttcgagttcctgggcaac 13230434
>gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0065O07r, DNA sequence
Length = 448
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 358 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 299
Query: 510 tggaaccc 517
||||||||
Sbjct: 298 tggaaccc 291
>gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017696, whole
genome shotgun sequence
Length = 20538
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 3087 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 3028
Query: 510 tggaaccc 517
||||||||
Sbjct: 3027 tggaaccc 3020
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 906
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 439 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 498
Query: 510 tggaaccc 517
||||||||
Sbjct: 499 tggaaccc 506
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 134091 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 134032
Query: 510 tggaaccc 517
||||||||
Sbjct: 134031 tggaaccc 134024
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 486 gactaccacacctacaccatcatctggaacccg 518
|||| ||| ||||||||||||||||||||||||
Sbjct: 296564 gacttccatacctacaccatcatctggaacccg 296596
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 465 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 516
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 290736 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 290787
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 450 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 509
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 7736097 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 7736038
Query: 510 tggaaccc 517
||||||||
Sbjct: 7736037 tggaaccc 7736030
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 486 gactaccacacctacaccatcatctggaacccg 518
|||| ||| ||||||||||||||||||||||||
Sbjct: 7898570 gacttccatacctacaccatcatctggaacccg 7898602
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 465 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 516
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 7892742 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 7892793
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,044,647
Number of Sequences: 438736
Number of extensions: 1044647
Number of successful extensions: 38034
Number of sequences better than 0.5: 191
Number of HSP's better than 0.5 without gapping: 198
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34833
Number of HSP's gapped (non-prelim): 3199
length of query: 529
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 508
effective length of database: 2,791,206,460
effective search space: 1417932881680
effective search space used: 1417932881680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)