BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829517.2.1
(913 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073086.1| Oryza sativa (japonica cultivar-group) cDNA... 291 3e-076
ref|XM_466275.1| Oryza sativa (japonica cultivar-group), mRNA 291 3e-076
emb|AJ486976.1|OSA486976 Oryza sativa (japonica cultivar-gr... 188 4e-045
dbj|AP004055.1| Oryza sativa (japonica cultivar-group) chro... 78 9e-012
dbj|AP004144.3| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
gb|AY538745.1| Oryza sativa (japonica cultivar-group) gluta... 78 9e-012
gb|AACV01004693.1| Oryza sativa (japonica cultivar-group) c... 78 9e-012
dbj|AP004865.3| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 78 9e-012
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 78 9e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 78 9e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 78 9e-012
gb|CA755882.1|CA755882 BR030030000_PLATE_D09_68_077.ab1 OA ... 64 1e-007
gb|CF305673.1|CF305673 HDA1--01-G09.g1 OsHDAC1-overexpressi... 64 1e-007
dbj|AK065921.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
gb|AF402792.1| Oryza sativa (japonica cultivar-group) clone... 64 1e-007
gb|C28507.1|C28507 C28507 Rice callus cDNA Oryza sativa (ja... 60 2e-006
gb|CB685720.1|CB685720 OSJNEf16G07.r OSJNEf Oryza sativa (j... 60 2e-006
gb|CB685719.1|CB685719 OSJNEf16G07.f OSJNEf Oryza sativa (j... 56 3e-005
dbj|AG210548.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.033
ref|NT_107114.1| Oryza sativa (japonica cultivar-group) 46 0.033
gb|AACV01022721.1| Oryza sativa (japonica cultivar-group) c... 46 0.033
gb|CH401261.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.033
gb|AC135459.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|AC138000.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|D39408.1|D39408 RICS0716A Rice shoot Oryza sativa (japon... 44 0.13
gb|AU063464.2|AU063464 AU063464 Rice callus Oryza sativa (j... 44 0.13
gb|AU063357.2|AU063357 AU063357 Rice callus Oryza sativa (j... 44 0.13
gb|CF323342.1|CF323342 HDN--03-J13.g1 OsHDAC1-overexpressin... 44 0.13
dbj|AK069105.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
gb|AF309381.1| Oryza sativa (japonica cultivar-group) clone... 44 0.13
>dbj|AK073086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022J16, full
insert sequence
Length = 963
Score = 291 bits (147), Expect = 3e-076
Identities = 270/311 (86%)
Strand = Plus / Plus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 133 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 192
Query: 97 ggtgtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaa 156
|| |||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 193 ggattggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccagaa 252
Query: 157 ttcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaata 216
||| | ||| |||||||||||||||||||||| || ||||| ||||| | |||||||
Sbjct: 253 ttcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgtaatt 312
Query: 217 ggtgactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttcta 276
||||| |||||||||||| || | |||||||||||||||||||| |||| |||||| ||
Sbjct: 313 ggtgattcttacgcgatagcattatatttggaggacaagtaccctgagcaccctctttta 372
Query: 277 cctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggt 336
|||||||||||| ||| ||| || ||||||| |||||| |||||||||||| |||||
Sbjct: 373 cctcaagaccttaaaatgaaggccttgaatctccagatagcaagcattgtatgctctgga 432
Query: 337 attcaacctct 347
|||||||||||
Sbjct: 433 attcaacctct 443
Score = 119 bits (60), Expect = 3e-024
Identities = 149/179 (83%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 367 aggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatc 426
||||||||||| ||||||||||| |||||||||| | |||||||||||||| |||
Sbjct: 499 aggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagatc 558
Query: 427 gagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtat 486
|| ||||||||| ||||| ||||||||| | ||||||| || || |||||||||
Sbjct: 559 gacagaggtttcgcagctgctgagaacct------agtaaaaggctgtgctgggaagtat 612
Query: 487 gcaacaggagatgaagtccaactggcagatgtattccttgcaccccagatctatgcagc 545
||||||||||||||||||| | ||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 613 gcaacaggagatgaagtccgattggcagacgtattcctcgcacctcagatttatgcagc 671
>ref|XM_466275.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 963
Score = 291 bits (147), Expect = 3e-076
Identities = 270/311 (86%)
Strand = Plus / Plus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 133 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 192
Query: 97 ggtgtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaa 156
|| |||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 193 ggattggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccagaa 252
Query: 157 ttcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaata 216
||| | ||| |||||||||||||||||||||| || ||||| ||||| | |||||||
Sbjct: 253 ttcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgtaatt 312
Query: 217 ggtgactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttcta 276
||||| |||||||||||| || | |||||||||||||||||||| |||| |||||| ||
Sbjct: 313 ggtgattcttacgcgatagcattatatttggaggacaagtaccctgagcaccctctttta 372
Query: 277 cctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggt 336
|||||||||||| ||| ||| || ||||||| |||||| |||||||||||| |||||
Sbjct: 373 cctcaagaccttaaaatgaaggccttgaatctccagatagcaagcattgtatgctctgga 432
Query: 337 attcaacctct 347
|||||||||||
Sbjct: 433 attcaacctct 443
Score = 119 bits (60), Expect = 3e-024
Identities = 149/179 (83%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 367 aggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaatc 426
||||||||||| ||||||||||| |||||||||| | |||||||||||||| |||
Sbjct: 499 aggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagatc 558
Query: 427 gagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccgggaagtat 486
|| ||||||||| ||||| ||||||||| | ||||||| || || |||||||||
Sbjct: 559 gacagaggtttcgcagctgctgagaacct------agtaaaaggctgtgctgggaagtat 612
Query: 487 gcaacaggagatgaagtccaactggcagatgtattccttgcaccccagatctatgcagc 545
||||||||||||||||||| | ||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 613 gcaacaggagatgaagtccgattggcagacgtattcctcgcacctcagatttatgcagc 671
>emb|AJ486976.1|OSA486976 Oryza sativa (japonica cultivar-group) partial mRNA for glutathione
s-transferase (gst2 gene)
Length = 697
Score = 188 bits (95), Expect = 4e-045
Identities = 254/306 (83%), Gaps = 7/306 (2%)
Strand = Plus / Plus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
|||||||||| |||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 130 gtatttggag-acaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 188
Query: 300 tttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcac 359
||||||| |||||| |||||||||||| ||||| ||||||||||| || || || ||
Sbjct: 189 cttgaatctccagatagcaagcattgtatgctctggaattcaacctcttcacaatcttac 248
Query: 360 agtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaaca 419
|| ||||||||||||| ||||||||||| |||||||||| | |||||||||||
Sbjct: 249 cgtactgaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaaca 308
Query: 420 acaaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccgg 479
||| ||||| ||||||||| ||||| ||||||||| | ||||||| || || ||
Sbjct: 309 acagatcgacagaggtttcgcagctgctgagaacct------agtaaaaggctgtgctgg 362
Query: 480 gaagtatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccagatcta 539
|||||||||||||||||||||||||| | ||||||| |||||||| ||||| ||||| ||
Sbjct: 363 gaagtatgcaacaggagatgaagtccgattggcagacgtattcctcgcacctcagattta 422
Query: 540 tgcagc 545
||||||
Sbjct: 423 tgcagc 428
Score = 139 bits (70), Expect = 3e-030
Identities = 106/118 (89%)
Strand = Plus / Plus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 13 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 72
Query: 97 ggtgtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|| |||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 73 ggattggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 130
>dbj|AP004055.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1304_E10,
*** SEQUENCING IN PROGRESS ***
Length = 106562
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 40239 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 40298
Query: 97 ggt 99
|||
Sbjct: 40299 ggt 40301
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 40438 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 40491
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 41178 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 41237
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 41238 cttgaatctccag 41250
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 41010 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 41069
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 41070 aattggtgattcttacgcgata 41091
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 42202 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 42243
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 41889 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 41948
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 41949 cgacagaggtttc 41961
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1712_E04
Length = 110098
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 92899 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 92840
Query: 97 ggt 99
|||
Sbjct: 92839 ggt 92837
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 92700 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 92647
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 91960 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 91901
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 91900 cttgaatctccag 91888
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 92128 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 92069
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 92068 aattggtgattcttacgcgata 92047
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 90936 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 90895
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 91249 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 91190
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 91189 cgacagaggtttc 91177
>gb|AY538745.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase
(GSTZ3) gene, complete cds
Length = 2622
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 46 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 105
Query: 97 ggt 99
|||
Sbjct: 106 ggt 108
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 245 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 298
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 985 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 1044
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 1045 cttgaatctccag 1057
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 817 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 876
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 877 aattggtgattcttacgcgata 898
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 2009 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 2050
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 1696 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 1755
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 1756 cgacagaggtttc 1768
>gb|AACV01004693.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004693, whole
genome shotgun sequence
Length = 39114
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 25903 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 25962
Query: 97 ggt 99
|||
Sbjct: 25963 ggt 25965
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 26102 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 26155
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 26842 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 26901
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 26902 cttgaatctccag 26914
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 26674 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 26733
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 26734 aattggtgattcttacgcgata 26755
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 27866 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 27907
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 27553 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 27612
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 27613 cgacagaggtttc 27625
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0020C11
Length = 163328
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 27873 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 27814
Query: 97 ggt 99
|||
Sbjct: 27813 ggt 27811
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 27674 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 27621
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 26934 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 26875
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 26874 cttgaatctccag 26862
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 27102 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 27043
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 27042 aattggtgattcttacgcgata 27021
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 25910 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 25869
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 26223 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 26164
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 26163 cgacagaggtttc 26151
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 2617188 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 2617129
Query: 97 ggt 99
|||
Sbjct: 2617128 ggt 2617126
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 2616989 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 2616936
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 2616249 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 2616190
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 2616189 cttgaatctccag 2616177
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 2616417 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 2616358
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 2616357 aattggtgattcttacgcgata 2616336
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 2615225 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 2615184
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 2615538 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 2615479
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 2615478 cgacagaggtttc 2615466
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 7754163 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 7754104
Query: 97 ggt 99
|||
Sbjct: 7754103 ggt 7754101
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 7753964 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 7753911
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 7753224 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 7753165
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 7753164 cttgaatctccag 7753152
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 7753392 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 7753333
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 7753332 aattggtgattcttacgcgata 7753311
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 7752200 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 7752159
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 7752513 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 7752454
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 7752453 cgacagaggtttc 7752441
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 21207227 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 21207168
Query: 97 ggt 99
|||
Sbjct: 21207167 ggt 21207165
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 21207028 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 21206975
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 21206288 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 21206229
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 21206228 cttgaatctccag 21206216
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 21206456 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 21206397
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 21206396 aattggtgattcttacgcgata 21206375
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 21205264 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 21205223
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 21205577 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 21205518
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 21205517 cgacagaggtttc 21205505
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 77.8 bits (39), Expect = 9e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 37 ctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaa 96
||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 21432946 ctgtactcgtactggcggagctcgtgctcgcaccgcgtccgcatcgccctcaacctcaaa 21432887
Query: 97 ggt 99
|||
Sbjct: 21432886 ggt 21432884
Score = 75.8 bits (38), Expect = 4e-011
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 101 tggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
|||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 21432747 tggagtacgagtacaaggcggtgaacctgctcaagggggagcactctgatccag 21432694
Score = 73.8 bits (37), Expect = 1e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||
Sbjct: 21432007 gtatttggaggacaagtaccctgagcaccctcttttacctcaagaccttaaaatgaaggc 21431948
Query: 300 tttgaatcaccag 312
||||||| ||||
Sbjct: 21431947 cttgaatctccag 21431935
Score = 67.9 bits (34), Expect = 9e-009
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 153 agaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgt 212
||||||| | ||| |||||||||||||||||||||| || ||||| ||||| | ||||
Sbjct: 21432175 agaattcatgaaggttaatcctatgaagttcgtcccggcattggtcgatggagatgctgt 21432116
Query: 213 aataggtgactcttacgcgata 234
||| ||||| ||||||||||||
Sbjct: 21432115 aattggtgattcttacgcgata 21432094
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 21430983 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 21430942
Score = 58.0 bits (29), Expect = 9e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 366 gaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaacaaat 425
|||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||
Sbjct: 21431296 gaggttcattgagaagaaggttggtacaggggagagcatcccatggactcaacaacagat 21431237
Query: 426 cgagagaggtttc 438
||| |||||||||
Sbjct: 21431236 cgacagaggtttc 21431224
>gb|CA755882.1|CA755882 BR030030000_PLATE_D09_68_077.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030030000_PLATE_D09_68_077.ab1 similar to (AF402792)
putative glutathione S-transferase OsGSTZ2 [Oryza sativa
subsp. japonica] [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 594
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||| ||| |||| |||||||||||||||||||||||| |||||
Sbjct: 171 cagctcctgctctcaccgaatccggatcgttctcaatctcaaaggtgtggattatgagta 230
Query: 114 caag 117
||||
Sbjct: 231 caag 234
>gb|CF305673.1|CF305673 HDA1--01-G09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--01-G09, mRNA sequence
Length = 499
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||| ||| |||| |||||||||||||||||||||||| |||||
Sbjct: 136 cagctcctgctctcaccgaatccggatcgttctcaatctcaaaggtgtggattatgagta 195
Query: 114 caag 117
||||
Sbjct: 196 caag 199
>dbj|AK065921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048G20, full
insert sequence
Length = 1013
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||| ||| |||| |||||||||||||||||||||||| |||||
Sbjct: 145 cagctcctgctctcaccgaatccggatcgttctcaatctcaaaggtgtggattatgagta 204
Query: 114 caag 117
||||
Sbjct: 205 caag 208
>dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043B09, full
insert sequence
Length = 1250
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||| ||| |||| |||||||||||||||||||||||| |||||
Sbjct: 147 cagctcctgctctcaccgaatccggatcgttctcaatctcaaaggtgtggattatgagta 206
Query: 114 caag 117
||||
Sbjct: 207 caag 210
>gb|AF402792.1| Oryza sativa (japonica cultivar-group) clone C61372_1A putative
glutathione S-transferase OsGSTZ2 mRNA, complete cds
Length = 1014
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||| ||||| ||| |||| |||||||||||||||||||||||| |||||
Sbjct: 111 cagctcctgctctcaccgaatccggatcgttctcaatctcaaaggtgtggattatgagta 170
Query: 114 caag 117
||||
Sbjct: 171 caag 174
>gb|C28507.1|C28507 C28507 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61372_1A, mRNA sequence
Length = 423
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 84 tctcaatctcaaaggtgtggattacgagtacaag 117
|||||||||||||||||||||||| |||||||||
Sbjct: 140 tctcaatctcaaaggtgtggattatgagtacaag 173
>gb|CB685720.1|CB685720 OSJNEf16G07.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf16G07 3', mRNA sequence
Length = 703
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 464 taaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
||||||| || || ||||||||||||||||||||||||||||
Sbjct: 662 taaaaggctgtgctgggaagtatgcaacaggagatgaagtcc 621
>gb|CB685719.1|CB685719 OSJNEf16G07.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf16G07 5', mRNA sequence
Length = 665
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 478 gggaagtatgcaacaggagatgaagtcc 505
||||||||||||||||||||||||||||
Sbjct: 25 gggaagtatgcaacaggagatgaagtcc 52
>dbj|AG210548.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF1033_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF1033, genomic survey sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 295 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 354
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 355 ctcaaggggctggactacgagtacaag 381
>ref|NT_107114.1| Oryza sativa (japonica cultivar-group)
Length = 457033
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 170813 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 170872
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 170873 ctcaaggggctggactacgagtacaag 170899
>gb|AACV01022721.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022721, whole
genome shotgun sequence
Length = 70948
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 48467 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 48526
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 48527 ctcaaggggctggactacgagtacaag 48553
>gb|CH401261.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000098
genomic scaffold, whole genome shotgun sequence
Length = 1076157
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 616045 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 615986
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 615985 ctcaaggggctggactacgagtacaag 615959
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 7230428 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 7230487
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 7230488 ctcaaggggctggactacgagtacaag 7230514
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 7711727 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 7711786
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 7711787 ctcaaggggctggactacgagtacaag 7711813
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24,
complete sequence
Length = 137721
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 105228 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 105169
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 105168 ctcaaggggctggactacgagtacaag 105142
>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0024M06, complete sequence
Length = 51144
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 4540 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 4481
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 4480 ctcaaggggctggactacgagtacaag 4454
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 46.1 bits (23), Expect = 0.033
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||| | |||||||||||||||||| |||| | |||||| || ||||
Sbjct: 7781814 ctgaagctctactccttctggcgcagctcgtgctcgtaccgcgtccgcatagccctcagc 7781873
Query: 91 ctcaaaggtgtggattacgagtacaag 117
||||| || |||| ||||||||||||
Sbjct: 7781874 ctcaaggggctggactacgagtacaag 7781900
>gb|D39408.1|D39408 RICS0716A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 252
Score = 44.1 bits (22), Expect = 0.13
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 55 agctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtac 114
|||||||||||| || | | ||| ||||| ||||| ||||||||| | ||||| ||||||
Sbjct: 46 agctcgtgctcctacagggtccggatcgccctcaacctcaaaggtattgattatgagtac 105
Query: 115 aaggcggtga 124
| ||| ||||
Sbjct: 106 agggcagtga 115
>gb|AU063464.2|AU063464 AU063464 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61903, mRNA sequence
Length = 423
Score = 44.1 bits (22), Expect = 0.13
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 55 agctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtac 114
|||||||||||| || | | ||| ||||| ||||| ||||||||| | ||||| ||||||
Sbjct: 51 agctcgtgctcctacagggtccggatcgccctcaacctcaaaggtattgattatgagtac 110
Query: 115 aaggcggtga 124
| ||| ||||
Sbjct: 111 agggcagtga 120
>gb|AU063357.2|AU063357 AU063357 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61018, mRNA sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.13
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 55 agctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtac 114
|||||||||||| || | | ||| ||||| ||||| ||||||||| | ||||| ||||||
Sbjct: 51 agctcgtgctcctacagggtccggatcgccctcaacctcaaaggtattgattatgagtac 110
Query: 115 aaggcggtga 124
| ||| ||||
Sbjct: 111 agggcagtga 120
>gb|CF323342.1|CF323342 HDN--03-J13.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--03-J13, mRNA sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.13
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 55 agctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtac 114
|||||||||||| || | | ||| ||||| ||||| ||||||||| | ||||| ||||||
Sbjct: 23 agctcgtgctcctacagggtccggatcgccctcaacctcaaaggtattgattatgagtac 82
Query: 115 aaggcggtga 124
| ||| ||||
Sbjct: 83 agggcagtga 92
>dbj|AK069105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I03, full
insert sequence
Length = 1182
Score = 44.1 bits (22), Expect = 0.13
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 55 agctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtac 114
|||||||||||| || | | ||| ||||| ||||| ||||||||| | ||||| ||||||
Sbjct: 95 agctcgtgctcctacagggtccggatcgccctcaacctcaaaggtattgattatgagtac 154
Query: 115 aaggcggtga 124
| ||| ||||
Sbjct: 155 agggcagtga 164
>gb|AF309381.1| Oryza sativa (japonica cultivar-group) clone S4892 putative
glutathione S-transferase OsGSTZ1 mRNA, complete cds
Length = 1200
Score = 44.1 bits (22), Expect = 0.13
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 55 agctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtac 114
|||||||||||| || | | ||| ||||| ||||| ||||||||| | ||||| ||||||
Sbjct: 87 agctcgtgctcctacagggtccggatcgccctcaacctcaaaggtattgattatgagtac 146
Query: 115 aaggcggtga 124
| ||| ||||
Sbjct: 147 agggcagtga 156
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,197,388
Number of Sequences: 438736
Number of extensions: 1197388
Number of successful extensions: 16173
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15811
Number of HSP's gapped (non-prelim): 362
length of query: 913
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 892
effective length of database: 2,791,206,460
effective search space: 2489756162320
effective search space used: 2489756162320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)