BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829259.2.1
(1019 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA... 432 e-118
ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA 432 e-118
ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA 432 e-118
gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (j... 305 2e-080
dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUG... 305 2e-080
ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA 305 2e-080
dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA... 289 1e-075
dbj|AP005879.3| Oryza sativa (japonica cultivar-group) geno... 210 1e-051
gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) c... 210 1e-051
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 210 1e-051
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 210 1e-051
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 210 1e-051
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 210 1e-051
gb|CB649206.1|CB649206 OSJNEb13A07.r OSJNEb Oryza sativa (j... 188 4e-045
gb|CB679083.1|CB679083 OSJNEf02C10.r OSJNEf Oryza sativa (j... 180 1e-042
gb|CB669623.1|CB669623 OSJNEe02D23.r OSJNEe Oryza sativa (j... 174 6e-041
dbj|AK063871.1| Oryza sativa (japonica cultivar-group) cDNA... 159 4e-036
gb|CB672511.1|CB672511 OSJNEe06J08.r OSJNEe Oryza sativa (j... 137 1e-029
dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chro... 137 1e-029
dbj|AP004397.3| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) c... 137 1e-029
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 137 1e-029
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (j... 131 8e-028
gb|CV152471.1|CV152471 LS34-S.SEQ Cold stressed rice cDNA l... 98 1e-017
gb|AU085741.1|AU085741 AU085741 Rice callus Oryza sativa (j... 78 1e-011
gb|AQ914234.1|AQ914234 nbeb0047J20f CUGI Rice BAC Library (... 74 2e-010
gb|CB681121.1|CB681121 OSJNEf06P20.f OSJNEf Oryza sativa (j... 52 6e-004
gb|CF292804.1|CF292804 30DGS--01-M06.b1 Rice leaf plasmid c... 52 6e-004
gb|CF309246.1|CF309246 ABF--03-F21.b1 ABF3-overexpressing t... 52 6e-004
gb|CF314144.1|CF314144 HD--02-I24.g1 OsHDAC1-overexpressing... 52 6e-004
gb|CF315219.1|CF315219 HD--04-A23.b1 OsHDAC1-overexpressing... 52 6e-004
dbj|AB087745.1| Oryza sativa (japonica cultivar-group) OsUG... 52 6e-004
dbj|AK066249.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
gb|AACV01012825.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|XM_476032.1| Oryza sativa (japonica cultivar-group), p... 52 6e-004
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|AC136217.4| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AU093034.1|AU093034 AU093034 Rice callus Oryza sativa (j... 48 0.009
gb|AU161347.1|AU161347 AU161347 Rice callus Oryza sativa (j... 48 0.009
gb|CB681122.1|CB681122 OSJNEf06P20.r OSJNEf Oryza sativa (j... 48 0.009
gb|CB684793.1|CB684793 OSJNEf14K15.f OSJNEf Oryza sativa (j... 48 0.009
gb|CF276200.1|CF276200 14ETL--01-E04.g1 Rice etiolated leaf... 48 0.009
gb|CF277249.1|CF277249 14ETL--02-L11.b1 Rice etiolated leaf... 48 0.009
gb|CF307798.1|CF307798 ABF--01-F19.b1 ABF3-overexpressing t... 48 0.009
gb|CF308368.1|CF308368 ABF--02-C17.g1 ABF3-overexpressing t... 48 0.009
gb|CF308514.1|CF308514 ABF--02-F22.g1 ABF3-overexpressing t... 48 0.009
gb|CF308937.1|CF308937 ABF--02-P01.g1 ABF3-overexpressing t... 48 0.009
gb|CF309124.1|CF309124 ABF--03-D03.g1 ABF3-overexpressing t... 48 0.009
gb|CF309247.1|CF309247 ABF--03-F21.g1 ABF3-overexpressing t... 48 0.009
gb|CF309463.1|CF309463 ABF--03-K15.g1 ABF3-overexpressing t... 48 0.009
gb|CF309751.1|CF309751 ABF--04-A24.g1 ABF3-overexpressing t... 48 0.009
gb|CF309927.1|CF309927 ABF--04-F05.g1 ABF3-overexpressing t... 48 0.009
gb|CF310061.1|CF310061 ABF--04-I11.g1 ABF3-overexpressing t... 48 0.009
gb|CF310156.1|CF310156 ABF--04-K17.g1 ABF3-overexpressing t... 48 0.009
gb|CF310802.1|CF310802 ABF--05-K18.b1 ABF3-overexpressing t... 48 0.009
gb|CF312561.1|CF312561 ABF--08-F24.b1 ABF3-overexpressing t... 48 0.009
gb|CF313990.1|CF313990 HD--02-F13.g1 OsHDAC1-overexpressing... 48 0.009
gb|CF315233.1|CF315233 HD--04-B06.g1 OsHDAC1-overexpressing... 48 0.009
gb|CF320798.1|CF320798 HD--11-N03.b1 OsHDAC1-overexpressing... 48 0.009
gb|CF320976.1|CF320976 HD--12-B04.b1 OsHDAC1-overexpressing... 48 0.009
gb|CF321935.1|CF321935 HD--13-F17.g1 OsHDAC1-overexpressing... 48 0.009
gb|CF336872.1|CF336872 JMT--07-B11.b1 AtJMT-overexpressing ... 48 0.009
gb|AZ046773.1|AZ046773 nbeb0085D08r CUGI Rice BAC Library (... 46 0.037
gb|CB658457.1|CB658457 OSJNEc14I03.f OSJNEc Oryza sativa (j... 44 0.15
>dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L03, full
insert sequence
Length = 1419
Score = 432 bits (218), Expect = e-118
Identities = 450/525 (85%), Gaps = 8/525 (1%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttcgctttcc 542
||||||| ||||||||||| |||||| |||||||||| |||||||||||| || ||||
Sbjct: 1139 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattttgccttcc 1080
Query: 543 agtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggac 602
| | || |||||||||||||| || | || |||||||||||||||||||||||||| |
Sbjct: 1079 acttgaattctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggc 1020
Query: 603 gccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgcattgacta 662
| ||| | || || |||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct: 1019 gtcgtggaccaataaccaaaggtattttctttccagaaactttctcaaatgcattaacta 960
Query: 663 tctccaacactgatgttccttttccggttccaaggttgtatgcttcacatcctatgttag 722
| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 959 tttccaacactgatgttccctttcctgttccaaggttgtatgcttgacatcctat----- 905
Query: 723 atgagctttcaaaaagcttccttaatgcgaaaagatgtccttcagcaaggtcaaccacat 782
|||||||||||| ||||||| || ||| || ||| || |||||||| ||||| ||||
Sbjct: 904 -tgagctttcaaacagcttccgtagtgcagcaatatgcccctcagcaagatcaactacat 846
Query: 783 gagatataatcacgaacccctgtcccatcctttgttgcgtagttatttccaaatattgtt 842
|| ||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||
Sbjct: 845 ga-atataatcacgtacccctgtcccatcttttgttgcatagtcatttccaaatattgta 787
Query: 843 agcgatggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagtt 902
|| || || ||||| || || |||| |||||| ||||||||||| |||||||||||| ||
Sbjct: 786 agtgacggtctcctcccgacagcaacttgctggacgaagggcatgaggttgttaggaatt 727
Query: 903 ccacatgggtcttcaccaaggtatccactggggtgagccccaactggattaaagtaccta 962
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 726 ccacatgggtcttcaccaaggtatccactgggatgagctccaacaggattgaagtaccta 667
Query: 963 agcaaaatgatattccattcaggatctgaat-gtagatatcacgg 1006
|| ||||| || ||||||||| |||||||| ||| |||||||||
Sbjct: 666 agtaaaattatgctccattcagaatctgaatggtatatatcacgg 622
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 1417 caagaaaaagaattgaattagctgactgactatagcaa 1380
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 1286 tgtatgactgaccgactagatctacat 1260
>ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1419
Score = 432 bits (218), Expect = e-118
Identities = 450/525 (85%), Gaps = 8/525 (1%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttcgctttcc 542
||||||| ||||||||||| |||||| |||||||||| |||||||||||| || ||||
Sbjct: 1139 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattttgccttcc 1080
Query: 543 agtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggac 602
| | || |||||||||||||| || | || |||||||||||||||||||||||||| |
Sbjct: 1079 acttgaattctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggc 1020
Query: 603 gccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgcattgacta 662
| ||| | || || |||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct: 1019 gtcgtggaccaataaccaaaggtattttctttccagaaactttctcaaatgcattaacta 960
Query: 663 tctccaacactgatgttccttttccggttccaaggttgtatgcttcacatcctatgttag 722
| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 959 tttccaacactgatgttccctttcctgttccaaggttgtatgcttgacatcctat----- 905
Query: 723 atgagctttcaaaaagcttccttaatgcgaaaagatgtccttcagcaaggtcaaccacat 782
|||||||||||| ||||||| || ||| || ||| || |||||||| ||||| ||||
Sbjct: 904 -tgagctttcaaacagcttccgtagtgcagcaatatgcccctcagcaagatcaactacat 846
Query: 783 gagatataatcacgaacccctgtcccatcctttgttgcgtagttatttccaaatattgtt 842
|| ||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||
Sbjct: 845 ga-atataatcacgtacccctgtcccatcttttgttgcatagtcatttccaaatattgta 787
Query: 843 agcgatggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagtt 902
|| || || ||||| || || |||| |||||| ||||||||||| |||||||||||| ||
Sbjct: 786 agtgacggtctcctcccgacagcaacttgctggacgaagggcatgaggttgttaggaatt 727
Query: 903 ccacatgggtcttcaccaaggtatccactggggtgagccccaactggattaaagtaccta 962
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 726 ccacatgggtcttcaccaaggtatccactgggatgagctccaacaggattgaagtaccta 667
Query: 963 agcaaaatgatattccattcaggatctgaat-gtagatatcacgg 1006
|| ||||| || ||||||||| |||||||| ||| |||||||||
Sbjct: 666 agtaaaattatgctccattcagaatctgaatggtatatatcacgg 622
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 1417 caagaaaaagaattgaattagctgactgactatagcaa 1380
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 1286 tgtatgactgaccgactagatctacat 1260
>ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1110
Score = 432 bits (218), Expect = e-118
Identities = 450/525 (85%), Gaps = 8/525 (1%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttcgctttcc 542
||||||| ||||||||||| |||||| |||||||||| |||||||||||| || ||||
Sbjct: 1054 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattttgccttcc 995
Query: 543 agtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggac 602
| | || |||||||||||||| || | || |||||||||||||||||||||||||| |
Sbjct: 994 acttgaattctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggc 935
Query: 603 gccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgcattgacta 662
| ||| | || || |||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct: 934 gtcgtggaccaataaccaaaggtattttctttccagaaactttctcaaatgcattaacta 875
Query: 663 tctccaacactgatgttccttttccggttccaaggttgtatgcttcacatcctatgttag 722
| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 874 tttccaacactgatgttccctttcctgttccaaggttgtatgcttgacatcctat----- 820
Query: 723 atgagctttcaaaaagcttccttaatgcgaaaagatgtccttcagcaaggtcaaccacat 782
|||||||||||| ||||||| || ||| || ||| || |||||||| ||||| ||||
Sbjct: 819 -tgagctttcaaacagcttccgtagtgcagcaatatgcccctcagcaagatcaactacat 761
Query: 783 gagatataatcacgaacccctgtcccatcctttgttgcgtagttatttccaaatattgtt 842
|| ||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||
Sbjct: 760 ga-atataatcacgtacccctgtcccatcttttgttgcatagtcatttccaaatattgta 702
Query: 843 agcgatggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagtt 902
|| || || ||||| || || |||| |||||| ||||||||||| |||||||||||| ||
Sbjct: 701 agtgacggtctcctcccgacagcaacttgctggacgaagggcatgaggttgttaggaatt 642
Query: 903 ccacatgggtcttcaccaaggtatccactggggtgagccccaactggattaaagtaccta 962
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 641 ccacatgggtcttcaccaaggtatccactgggatgagctccaacaggattgaagtaccta 582
Query: 963 agcaaaatgatattccattcaggatctgaat-gtagatatcacgg 1006
|| ||||| || ||||||||| |||||||| ||| |||||||||
Sbjct: 581 agtaaaattatgctccattcagaatctgaatggtatatatcacgg 537
>gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 5', mRNA sequence
Length = 884
Score = 305 bits (154), Expect = 2e-080
Identities = 446/540 (82%), Gaps = 5/540 (0%)
Strand = Plus / Minus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 660 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 601
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 600 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 541
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 540 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 481
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 480 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 421
Query: 708 cacatcctatgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcag 767
|||| |||||| | ||||| ||||| || ||| ||||| || |||||| ||||
Sbjct: 420 cacaccctatgct---ggagctctcaaagagtttctgcaatgccgcaatatgtccatcag 364
Query: 768 caaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgttgcgtagtta 827
|||||||||||||||| ||| ||||| || ||||| || ||||| | ||||| || | |
Sbjct: 363 caaggtcaaccacatg-gatgtaatctcggaccccggtaccatctctggttgcataatca 305
Query: 828 tttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcata 887
||||| | |||||| || | ||||||||||||||| |||| ||||||||| | ||||||
Sbjct: 304 tttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcata 245
Query: 888 aggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaact 947
|| ||||| ||| | |||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 244 agattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaact 185
Query: 948 ggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacgg 1006
||||| ||||||||||| | ||| || |||||||||||||||| | |||||||||||||
Sbjct: 184 ggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacgg 125
>dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUGE-2 mRNA for putative
UDP-glucose 4-epimerase, complete cds
Length = 1736
Score = 305 bits (154), Expect = 2e-080
Identities = 446/540 (82%), Gaps = 5/540 (0%)
Strand = Plus / Minus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 1279 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 1220
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 1219 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 1160
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 1159 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 1100
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 1099 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 1040
Query: 708 cacatcctatgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcag 767
|||| |||||| | ||||| ||||| || ||| ||||| || |||||| ||||
Sbjct: 1039 cacaccctatgct---ggagctctcaaagagtttctgcaatgccgcaatatgtccatcag 983
Query: 768 caaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgttgcgtagtta 827
|||||||||||||||| ||| ||||| || ||||| || ||||| | ||||| || | |
Sbjct: 982 caaggtcaaccacatg-gatgtaatctcggaccccggtaccatctctggttgcataatca 924
Query: 828 tttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcata 887
||||| | |||||| || | ||||||||||||||| |||| ||||||||| | ||||||
Sbjct: 923 tttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcata 864
Query: 888 aggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaact 947
|| ||||| ||| | |||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 863 agattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaact 804
Query: 948 ggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacgg 1006
||||| ||||||||||| | ||| || |||||||||||||||| | |||||||||||||
Sbjct: 803 ggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacgg 744
>ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1878
Score = 305 bits (154), Expect = 2e-080
Identities = 446/540 (82%), Gaps = 5/540 (0%)
Strand = Plus / Minus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 1304 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 1245
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 1244 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 1185
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 1184 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 1125
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 1124 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 1065
Query: 708 cacatcctatgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcag 767
|||| |||||| | ||||| ||||| || ||| ||||| || |||||| ||||
Sbjct: 1064 cacaccctatgct---ggagctctcaaagagtttctgcaatgccgcaatatgtccatcag 1008
Query: 768 caaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgttgcgtagtta 827
|||||||||||||||| ||| ||||| || ||||| || ||||| | ||||| || | |
Sbjct: 1007 caaggtcaaccacatg-gatgtaatctcggaccccggtaccatctctggttgcataatca 949
Query: 828 tttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcata 887
||||| | |||||| || | ||||||||||||||| |||| ||||||||| | ||||||
Sbjct: 948 tttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcata 889
Query: 888 aggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaact 947
|| ||||| ||| | |||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 888 agattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaact 829
Query: 948 ggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacgg 1006
||||| ||||||||||| | ||| || |||||||||||||||| | |||||||||||||
Sbjct: 828 ggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacgg 769
>dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059D16, full
insert sequence
Length = 1878
Score = 289 bits (146), Expect = 1e-075
Identities = 444/540 (82%), Gaps = 5/540 (0%)
Strand = Plus / Minus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 1304 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 1245
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 1244 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 1185
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 1184 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 1125
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 1124 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 1065
Query: 708 cacatcctatgttagatgagctttcaaaaagcttccttaatgcgaaaagatgtccttcag 767
|||| |||||| | ||||| ||||| || ||| ||||| || |||||| ||||
Sbjct: 1064 cacaccctatgct---ggagctctcaaagagtttctgcaatgccgcaatatgtccatcag 1008
Query: 768 caaggtcaaccacatgagatataatcacgaacccctgtcccatcctttgttgcgtagtta 827
|||||||||||||||| ||| ||||| || ||| | || ||||| | ||||| || | |
Sbjct: 1007 caaggtcaaccacatg-gatgtaatctcggacctcggtaccatctctggttgcataatca 949
Query: 828 tttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcata 887
||||| | ||||| || | ||||||||||||||| |||| ||||||||| | ||||||
Sbjct: 948 tttcctagtattgccagagctggcctcctgccaacagcaacttgctgaacataaggcata 889
Query: 888 aggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaact 947
|| ||||| ||| | |||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 888 agattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaact 829
Query: 948 ggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacgg 1006
||||| ||||||||||| | ||| || |||||||||||||||| | |||||||||||||
Sbjct: 828 ggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacgg 769
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0024J13
Length = 127614
Score = 210 bits (106), Expect = 1e-051
Identities = 185/210 (88%), Gaps = 1/210 (0%)
Strand = Plus / Plus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
|||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||
Sbjct: 70300 acccctgtcccatcttttgttgcatagtcatttccaaatattgtaagtgacggtctcctc 70359
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
|| || |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 70360 ccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtcttca 70419
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 70420 ccaaggtatccactgggatgagctccaacaggattgaagtacctaagtaaaattatgctc 70479
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
||||||| |||||||| ||| |||||||||
Sbjct: 70480 cattcagaatctgaatggtatatatcacgg 70509
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
|||||||||| | |||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 69307 ctttccagaaactttctcaaatgcattaactatttccaacactgatgttccctttcctgt 69366
Query: 691 tccaaggttgtatgcttcacatcct 715
||||||||||||||||| |||||||
Sbjct: 69367 tccaaggttgtatgcttgacatcct 69391
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 551 tctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgg 610
|||||||||||||| || | || |||||||||||||||||||||||||| || ||| |
Sbjct: 68786 tctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggcgtcgtgga 68845
Query: 611 cccatgaccaaagggattttct 632
|| || |||||||| |||||||
Sbjct: 68846 ccaataaccaaaggtattttct 68867
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatattt 534
||||||| ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 68633 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattt 68684
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 68355 caagaaaaagaattgaattagctgactgactatagcaa 68392
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 68486 tgtatgactgaccgactagatctacat 68512
>gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019597, whole
genome shotgun sequence
Length = 35375
Score = 210 bits (106), Expect = 1e-051
Identities = 185/210 (88%), Gaps = 1/210 (0%)
Strand = Plus / Minus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
|||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||
Sbjct: 25491 acccctgtcccatcttttgttgcatagtcatttccaaatattgtaagtgacggtctcctc 25432
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
|| || |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 25431 ccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtcttca 25372
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 25371 ccaaggtatccactgggatgagctccaacaggattgaagtacctaagtaaaattatgctc 25312
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
||||||| |||||||| ||| |||||||||
Sbjct: 25311 cattcagaatctgaatggtatatatcacgg 25282
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
|||||||||| | |||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 26484 ctttccagaaactttctcaaatgcattaactatttccaacactgatgttccctttcctgt 26425
Query: 691 tccaaggttgtatgcttcacatcct 715
||||||||||||||||| |||||||
Sbjct: 26424 tccaaggttgtatgcttgacatcct 26400
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 551 tctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgg 610
|||||||||||||| || | || |||||||||||||||||||||||||| || ||| |
Sbjct: 27005 tctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggcgtcgtgga 26946
Query: 611 cccatgaccaaagggattttct 632
|| || |||||||| |||||||
Sbjct: 26945 ccaataaccaaaggtattttct 26924
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatattt 534
||||||| ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 27158 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattt 27107
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 27436 caagaaaaagaattgaattagctgactgactatagcaa 27399
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 27305 tgtatgactgaccgactagatctacat 27279
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 210 bits (106), Expect = 1e-051
Identities = 185/210 (88%), Gaps = 1/210 (0%)
Strand = Plus / Plus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
|||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||
Sbjct: 198887 acccctgtcccatcttttgttgcatagtcatttccaaatattgtaagtgacggtctcctc 198946
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
|| || |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 198947 ccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtcttca 199006
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 199007 ccaaggtatccactgggatgagctccaacaggattgaagtacctaagtaaaattatgctc 199066
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
||||||| |||||||| ||| |||||||||
Sbjct: 199067 cattcagaatctgaatggtatatatcacgg 199096
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
|||||||||| | |||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 197894 ctttccagaaactttctcaaatgcattaactatttccaacactgatgttccctttcctgt 197953
Query: 691 tccaaggttgtatgcttcacatcct 715
||||||||||||||||| |||||||
Sbjct: 197954 tccaaggttgtatgcttgacatcct 197978
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 551 tctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgg 610
|||||||||||||| || | || |||||||||||||||||||||||||| || ||| |
Sbjct: 197373 tctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggcgtcgtgga 197432
Query: 611 cccatgaccaaagggattttct 632
|| || |||||||| |||||||
Sbjct: 197433 ccaataaccaaaggtattttct 197454
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatattt 534
||||||| ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 197220 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattt 197271
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 196942 caagaaaaagaattgaattagctgactgactatagcaa 196979
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 197073 tgtatgactgaccgactagatctacat 197099
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078 genomic
scaffold, whole genome shotgun sequence
Length = 4067473
Score = 210 bits (106), Expect = 1e-051
Identities = 185/210 (88%), Gaps = 1/210 (0%)
Strand = Plus / Plus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
|||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||
Sbjct: 2868061 acccctgtcccatcttttgttgcatagtcatttccaaatattgtaagtgacggtctcctc 2868120
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
|| || |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 2868121 ccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtcttca 2868180
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 2868181 ccaaggtatccactgggatgagctccaacaggattgaagtacctaagtaaaattatgctc 2868240
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
||||||| |||||||| ||| |||||||||
Sbjct: 2868241 cattcagaatctgaatggtatatatcacgg 2868270
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
|||||||||| | |||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 2867068 ctttccagaaactttctcaaatgcattaactatttccaacactgatgttccctttcctgt 2867127
Query: 691 tccaaggttgtatgcttcacatcct 715
||||||||||||||||| |||||||
Sbjct: 2867128 tccaaggttgtatgcttgacatcct 2867152
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 551 tctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgg 610
|||||||||||||| || | || |||||||||||||||||||||||||| || ||| |
Sbjct: 2866547 tctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggcgtcgtgga 2866606
Query: 611 cccatgaccaaagggattttct 632
|| || |||||||| |||||||
Sbjct: 2866607 ccaataaccaaaggtattttct 2866628
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatattt 534
||||||| ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 2866394 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattt 2866445
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 2866116 caagaaaaagaattgaattagctgactgactatagcaa 2866153
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 2866247 tgtatgactgaccgactagatctacat 2866273
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 210 bits (106), Expect = 1e-051
Identities = 185/210 (88%), Gaps = 1/210 (0%)
Strand = Plus / Plus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
|||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||
Sbjct: 8274299 acccctgtcccatcttttgttgcatagtcatttccaaatattgtaagtgacggtctcctc 8274358
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
|| || |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 8274359 ccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtcttca 8274418
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 8274419 ccaaggtatccactgggatgagctccaacaggattgaagtacctaagtaaaattatgctc 8274478
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
||||||| |||||||| ||| |||||||||
Sbjct: 8274479 cattcagaatctgaatggtatatatcacgg 8274508
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
|||||||||| | |||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 8273306 ctttccagaaactttctcaaatgcattaactatttccaacactgatgttccctttcctgt 8273365
Query: 691 tccaaggttgtatgcttcacatcct 715
||||||||||||||||| |||||||
Sbjct: 8273366 tccaaggttgtatgcttgacatcct 8273390
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 551 tctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgg 610
|||||||||||||| || | || |||||||||||||||||||||||||| || ||| |
Sbjct: 8272785 tctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggcgtcgtgga 8272844
Query: 611 cccatgaccaaagggattttct 632
|| || |||||||| |||||||
Sbjct: 8272845 ccaataaccaaaggtattttct 8272866
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatattt 534
||||||| ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 8272632 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattt 8272683
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 8272354 caagaaaaagaattgaattagctgactgactatagcaa 8272391
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 8272485 tgtatgactgaccgactagatctacat 8272511
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 210 bits (106), Expect = 1e-051
Identities = 185/210 (88%), Gaps = 1/210 (0%)
Strand = Plus / Plus
Query: 798 acccctgtcccatcctttgttgcgtagttatttccaaatattgttagcgatggcctcctg 857
|||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||
Sbjct: 9386886 acccctgtcccatcttttgttgcatagtcatttccaaatattgtaagtgacggtctcctc 9386945
Query: 858 ccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttca 917
|| || |||| |||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 9386946 ccgacagcaacttgctggacgaagggcatgaggttgttaggaattccacatgggtcttca 9387005
Query: 918 ccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattc 977
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 9387006 ccaaggtatccactgggatgagctccaacaggattgaagtacctaagtaaaattatgctc 9387065
Query: 978 cattcaggatctgaat-gtagatatcacgg 1006
||||||| |||||||| ||| |||||||||
Sbjct: 9387066 cattcagaatctgaatggtatatatcacgg 9387095
Score = 113 bits (57), Expect = 2e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 631 ctttccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggt 690
|||||||||| | |||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 9385893 ctttccagaaactttctcaaatgcattaactatttccaacactgatgttccctttcctgt 9385952
Query: 691 tccaaggttgtatgcttcacatcct 715
||||||||||||||||| |||||||
Sbjct: 9385953 tccaaggttgtatgcttgacatcct 9385977
Score = 67.9 bits (34), Expect = 1e-008
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 551 tctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggacgccgttgg 610
|||||||||||||| || | || |||||||||||||||||||||||||| || ||| |
Sbjct: 9385372 tctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggcgtcgtgga 9385431
Query: 611 cccatgaccaaagggattttct 632
|| || |||||||| |||||||
Sbjct: 9385432 ccaataaccaaaggtattttct 9385453
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatattt 534
||||||| ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 9385219 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattt 9385270
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 9384941 caagaaaaagaattgaattagctgactgactatagcaa 9384978
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 9385072 tgtatgactgaccgactagatctacat 9385098
>gb|CB649206.1|CB649206 OSJNEb13A07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13A07 3', mRNA sequence
Length = 869
Score = 188 bits (95), Expect = 4e-045
Identities = 212/251 (84%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 513 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 572
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 573 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 632
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 633 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 692
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 693 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 752
Query: 708 cacatcctatg 718
|||| ||||||
Sbjct: 753 cacaccctatg 763
>gb|CB679083.1|CB679083 OSJNEf02C10.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02C10 3', mRNA sequence
Length = 792
Score = 180 bits (91), Expect = 1e-042
Identities = 211/251 (84%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 513 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 572
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 573 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 632
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| ||| |||||||||
Sbjct: 633 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccaaaagccttct 692
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 693 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 752
Query: 708 cacatcctatg 718
|||| ||||||
Sbjct: 753 cacaccctatg 763
>gb|CB669623.1|CB669623 OSJNEe02D23.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 3', mRNA sequence
Length = 822
Score = 174 bits (88), Expect = 6e-041
Identities = 202/240 (84%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 583 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 642
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 643 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 702
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 703 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 762
Query: 648 caaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgctt 707
||||||| ||||||||||||| ||| || || ||||| || |||||||||||||||||||
Sbjct: 763 caaatgccttgactatctccagcacagaggtacctttaccagttccaaggttgtatgctt 822
>dbj|AK063871.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E09, full
insert sequence
Length = 589
Score = 159 bits (80), Expect = 4e-036
Identities = 164/192 (85%)
Strand = Plus / Minus
Query: 483 tcttgctagcccagttccacaggtctccgcacatttctgtgatgccatatttcgctttcc 542
||||||| ||||||||||| |||||| |||||||||| |||||||||||| || ||||
Sbjct: 192 tcttgctcgcccagttccattggtctctgcacatttcttcgatgccatattttgccttcc 133
Query: 543 agtggagctctctctctgcttttgccggcgatgaaaagagaatctcagcatcaccaggac 602
| | || |||||||||||||| || | || |||||||||||||||||||||||||| |
Sbjct: 132 acttgaattctctctctgctttagcagctgacgaaaagagaatctcagcatcaccagggc 73
Query: 603 gccgttggcccatgaccaaagggattttctttccagaagccttctcaaatgcattgacta 662
| ||| | || || |||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct: 72 gtcgtggaccaataaccaaaggtattttctttccagaaactttctcaaatgcattaacta 13
Query: 663 tctccaacactg 674
| ||||||||||
Sbjct: 12 tttccaacactg 1
Score = 52.0 bits (26), Expect = 6e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 187 caagaaatagaattgaattagctggttgactatagcaa 224
||||||| |||||||||||||||| ||||||||||||
Sbjct: 470 caagaaaaagaattgaattagctgactgactatagcaa 433
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 334 tgtatgaccgaccgactagatctacat 360
|||||||| ||||||||||||||||||
Sbjct: 339 tgtatgactgaccgactagatctacat 313
>gb|CB672511.1|CB672511 OSJNEe06J08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06J08 3', mRNA sequence
Length = 835
Score = 137 bits (69), Expect = 1e-029
Identities = 165/197 (83%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 639 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 698
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 699 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 758
Query: 588 cagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttct 647
| ||||||||||| || | | |||| || | || ||| |||||||| |||||||||||||
Sbjct: 759 ccgcatcaccagggcgtcttgggccaataatcagaggaattttcttcccagaagccttct 818
Query: 648 caaatgcattgactatc 664
||||||| |||||||||
Sbjct: 819 caaatgccttgactatc 835
>dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0508B09, ***
SEQUENCING IN PROGRESS ***
Length = 144557
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 121458 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 121517
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 121518 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 121577
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 121578 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 121637
Query: 1006 g 1006
|
Sbjct: 121638 g 121638
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 120142 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 120201
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 120202 aggttgtatgcttcaca 120218
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 132827 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 132886
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 132887 aggttgtatgctt 132899
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 119615 cgtatccataagggttcttgctagcccagttcca 119648
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 120655 atgtccatcagcaaggtcaaccacatg 120681
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 119777 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 119822
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0436B06
Length = 148947
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 41911 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 41970
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 41971 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 42030
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 42031 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 42090
Query: 1006 g 1006
|
Sbjct: 42091 g 42091
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 40595 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 40654
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 40655 aggttgtatgcttcaca 40671
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 53281 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 53340
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 53341 aggttgtatgctt 53353
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 40068 cgtatccataagggttcttgctagcccagttcca 40101
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 41108 atgtccatcagcaaggtcaaccacatg 41134
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 40230 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 40275
>gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018313, whole
genome shotgun sequence
Length = 27159
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 15156 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 15215
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 15216 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 15275
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 15276 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 15335
Query: 1006 g 1006
|
Sbjct: 15336 g 15336
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 13840 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 13899
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 13900 aggttgtatgcttcaca 13916
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 26526 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 26585
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 26586 aggttgtatgctt 26598
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 13313 cgtatccataagggttcttgctagcccagttcca 13346
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 14353 atgtccatcagcaaggtcaaccacatg 14379
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 13475 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 13520
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 17327174 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 17327233
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 17327234 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 17327293
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 17327294 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 17327353
Query: 1006 g 1006
|
Sbjct: 17327354 g 17327354
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 17325858 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 17325917
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 17325918 aggttgtatgcttcaca 17325934
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 17338544 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 17338603
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 17338604 aggttgtatgctt 17338616
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 17325331 cgtatccataagggttcttgctagcccagttcca 17325364
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 17326371 atgtccatcagcaaggtcaaccacatg 17326397
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 17325493 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 17325538
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 8794186 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 8794245
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 8794246 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 8794305
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 8794306 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 8794365
Query: 1006 g 1006
|
Sbjct: 8794366 g 8794366
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 8792870 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 8792929
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 8792930 aggttgtatgcttcaca 8792946
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 8805556 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 8805615
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 8805616 aggttgtatgctt 8805628
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 8792343 cgtatccataagggttcttgctagcccagttcca 8792376
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 8793383 atgtccatcagcaaggtcaaccacatg 8793409
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 8792505 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 8792550
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 16396192 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 16396251
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 16396252 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 16396311
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 16396312 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 16396371
Query: 1006 g 1006
|
Sbjct: 16396372 g 16396372
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 16394876 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 16394935
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 16394936 aggttgtatgcttcaca 16394952
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 16407562 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 16407621
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 16407622 aggttgtatgctt 16407634
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 16394349 cgtatccataagggttcttgctagcccagttcca 16394382
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 16395389 atgtccatcagcaaggtcaaccacatg 16395415
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 16394511 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 16394556
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 137 bits (69), Expect = 1e-029
Identities = 154/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | |||||
Sbjct: 17565261 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataaggcat 17565320
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
||| ||||| ||| | |||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 17565321 aagattgttgggaatgccacatggatcttccccaaggtatccgctaggatgagccccaac 17565380
Query: 947 tggattaaagtacctaagcaaaatgatattccattcaggatctg-aatgtagatatcacg 1005
|||||| ||||||||||| | ||| || |||||||||||||||| | ||||||||||||
Sbjct: 17565381 tggattgaagtacctaagtagaataatcttccattcaggatctgtacggtagatatcacg 17565440
Query: 1006 g 1006
|
Sbjct: 17565441 g 17565441
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| ||||||||||||| ||| || || ||||| || ||||||
Sbjct: 17563945 ccagaagccttctcaaatgccttgactatctccagcacagaggtacctttaccagttcca 17564004
Query: 695 aggttgtatgcttcaca 711
|||||||||||||||||
Sbjct: 17564005 aggttgtatgcttcaca 17564021
Score = 65.9 bits (33), Expect = 4e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 635 ccagaagccttctcaaatgcattgactatctccaacactgatgttccttttccggttcca 694
|||||||||||||||||||| || ||| |||||| ||| || || ||||| || |||| |
Sbjct: 17576631 ccagaagccttctcaaatgccttcactgtctccagcacagaagtacctttaccagttcta 17576690
Query: 695 aggttgtatgctt 707
|||||||||||||
Sbjct: 17576691 aggttgtatgctt 17576703
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 468 cgtatccataagggctcttgctagcccagttcca 501
|||||||||||||| |||||||||||||||||||
Sbjct: 17563418 cgtatccataagggttcttgctagcccagttcca 17563451
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 757 atgtccttcagcaaggtcaaccacatg 783
|||||| ||||||||||||||||||||
Sbjct: 17564458 atgtccatcagcaaggtcaaccacatg 17564484
Score = 44.1 bits (22), Expect = 0.15
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 555 tctctgcttttgccggcgatgaaaagagaatctcagcatcaccagg 600
|||||||||| || || ||||||| |||||||| |||||||||||
Sbjct: 17563580 tctctgctttagcaggtaatgaaaatagaatctccgcatcaccagg 17563625
>gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249_2A, mRNA sequence
Length = 312
Score = 131 bits (66), Expect = 8e-028
Identities = 136/158 (86%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 850 gcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacatg 909
||||||||||||| |||| ||||||||| | |||||||| ||||| ||| | |||||||
Sbjct: 266 gcctcctgccaacagcaacttgctgaacataaggcataagattgttgggaatgccacatg 207
Query: 910 ggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaaa 969
| ||||| ||||||||||| || || ||||||||||||||||| ||||||||||| | ||
Sbjct: 206 gatcttccccaaggtatccgctaggatgagccccaactggattgaagtacctaagtagaa 147
Query: 970 tgatattccattcaggatctg-aatgtagatatcacgg 1006
| || |||||||||||||||| | |||||||||||||
Sbjct: 146 taatcttccattcaggatctgtacggtagatatcacgg 109
>gb|CV152471.1|CV152471 LS34-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 734
Score = 97.6 bits (49), Expect = 1e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 181 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 122
Query: 528 catatttcgctttccagtggagctctctctctgcttttgccggcgatgaaaagagaatct 587
|| ||||||||||||||| ||| || |||||||||| || || ||||||| |||||||
Sbjct: 121 caaatttcgctttccagttgagttccttctctgctttagcaggtaatgaaaatagaatct 62
Query: 588 cagcatcaccagg 600
| |||||||||||
Sbjct: 61 ccgcatcaccagg 49
>gb|AU085741.1|AU085741 AU085741 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249, mRNA sequence
Length = 708
Score = 77.8 bits (39), Expect = 1e-011
Identities = 113/135 (83%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 468 cgtatccataagggctcttgctagcccagttccacaggtctccgcacatttctgtgatgc 527
|||||||||||||| ||||||||||||||||||| | || | |||||||| |||||
Sbjct: 137 cgtatccataagggttcttgctagcccagttccattgatccctacacatttcatcgatgc 78
Query: 528 catatttcgctttccag-tggagctctctctctgcttttgccggcgatg-aaaagagaat 585
|| |||||||||||||| ||||| || |||||||||| || || ||| |||| |||||
Sbjct: 77 caaatttcgctttccagttggagttccttctctgctttagcaggtaatgaaaaatagaat 18
Query: 586 ctcagcatcaccagg 600
||| |||||||||||
Sbjct: 17 ctccgcatcaccagg 3
>gb|AQ914234.1|AQ914234 nbeb0047J20f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0047J20f, DNA sequence
Length = 763
Score = 73.8 bits (37), Expect = 2e-010
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 827 atttccaaatattgttagcgatggcctcctgccaactgcaatttgctgaacgaagggcat 886
|||||| | |||||| || | ||||||||||||||| |||| ||||||||| | ||||
Sbjct: 554 atttcctagtattgtcagagctggcctcctgccaacagcaacttgctgaacataatgcat 613
Query: 887 aaggttgttaggagttccacatgggtcttcaccaaggtatccactggggtgagccccaac 946
|| ||| | ||| | |||||| | ||||| |||| |||||| || || |||||||||||
Sbjct: 614 aaaattggtgggaatgccacattgatcttccccaaagtatccgctaggatgagccccaac 673
Query: 947 tggattaaagtacctaa 963
|||||| ||||||||||
Sbjct: 674 tggattgaagtacctaa 690
>gb|CB681121.1|CB681121 OSJNEf06P20.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06P20 5', mRNA sequence
Length = 751
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 555 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 496
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 495 gggtcctcaccaatgtacccgcttgggtgagctccaac 458
>gb|CF292804.1|CF292804 30DGS--01-M06.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-M06, mRNA sequence
Length = 544
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 228 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 169
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 168 gggtcctcaccaatgtacccgcttgggtgagctccaac 131
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 453 gggattttctttccagaagctttctcgaatgc 422
>gb|CF309246.1|CF309246 ABF--03-F21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-F21, mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 272 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 213
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 212 gggtcctcaccaatgtacccgcttgggtgagctccaac 175
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 497 gggattttctttccagaagctttctcgaatgc 466
>gb|CF314144.1|CF314144 HD--02-I24.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--02-I24, mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 417 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 476
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 477 gggtcctcaccaatgtacccgcttgggtgagctccaac 514
>gb|CF315219.1|CF315219 HD--04-A23.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--04-A23, mRNA sequence
Length = 649
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 409 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 350
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 349 gggtcctcaccaatgtacccgcttgggtgagctccaac 312
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 635 gggattttctttccagaagctttctcgaatgc 604
>dbj|AB087745.1| Oryza sativa (japonica cultivar-group) OsUGE-1 mRNA for UDP-glucose
4-epimerase, complete cds
Length = 1346
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 748 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 689
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 688 gggtcctcaccaatgtacccgcttgggtgagctccaac 651
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 973 gggattttctttccagaagctttctcgaatgc 942
>dbj|AK066249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051I17, full
insert sequence
Length = 3495
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 2677 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 2618
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 2617 gggtcctcaccaatgtacccgcttgggtgagctccaac 2580
>gb|AACV01012825.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012825, whole
genome shotgun sequence
Length = 24986
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 18519 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 18578
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 18579 gggtcctcaccaatgtacccgcttgggtgagctccaac 18616
>ref|XM_476032.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1065
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 662 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 603
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 602 gggtcctcaccaatgtacccgcttgggtgagctccaac 565
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 887 gggattttctttccagaagctttctcgaatgc 856
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 1049255 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 1049196
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 1049195 gggtcctcaccaatgtacccgcttgggtgagctccaac 1049158
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0030I14, complete sequence
Length = 159035
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 62356 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 62297
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 62296 gggtcctcaccaatgtacccgcttgggtgagctccaac 62259
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 11830014 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 11829955
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 11829954 gggtcctcaccaatgtacccgcttgggtgagctccaac 11829917
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 29130327 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 29130268
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 29130267 gggtcctcaccaatgtacccgcttgggtgagctccaac 29130230
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 52.0 bits (26), Expect = 6e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||||| ||||||||||| |||||||| || | || ||
Sbjct: 29414331 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtttgggatgccgcag 29414272
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 29414271 gggtcctcaccaatgtacccgcttgggtgagctccaac 29414234
>gb|AU093034.1|AU093034 AU093034 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61726, mRNA sequence
Length = 701
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 245 gggattttctttccagaagctttctcgaatgc 214
>gb|AU161347.1|AU161347 AU161347 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61839, mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 69 gggattttctttccagaagctttctcgaatgc 38
>gb|CB681122.1|CB681122 OSJNEf06P20.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06P20 3', mRNA sequence
Length = 841
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 530 gggattttctttccagaagctttctcgaatgc 561
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgtt 895
|||||||||||||| || | ||||| ||||||||||| ||||||||
Sbjct: 755 ggcctcctgccaacagcgacctgctggacgaagggcatgaggttgtt 801
>gb|CB684793.1|CB684793 OSJNEf14K15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14K15 5', mRNA sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 139 gggattttctttccagaagctttctcgaatgc 108
>gb|CF276200.1|CF276200 14ETL--01-E04.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-E04, mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 541 gggattttctttccagaagctttctcgaatgc 572
>gb|CF277249.1|CF277249 14ETL--02-L11.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-L11, mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 494 gggattttctttccagaagctttctcgaatgc 525
>gb|CF307798.1|CF307798 ABF--01-F19.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-F19, mRNA sequence
Length = 448
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgc 654
|||||||||||||||||||| ||||| |||||
Sbjct: 350 gggattttctttccagaagctttctcgaatgc 319
Score = 44.1 bits (22), Expect = 0.15
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| || | ||| | ||||||||||| |||||||| || | || ||
Sbjct: 124 ggcctcctgccaacagcgacctgccggacgaagggcatgaggttgtttgggatgccgcag 65
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaac 946
||||| ||||||| ||| || || |||||||| |||||
Sbjct: 64 gggtcctcaccaatgtacccgcttgggtgagctccaac 27
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,611,267
Number of Sequences: 438736
Number of extensions: 1611267
Number of successful extensions: 10102
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9687
Number of HSP's gapped (non-prelim): 397
length of query: 1019
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 998
effective length of database: 2,791,206,460
effective search space: 2785624047080
effective search space used: 2785624047080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)