BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004591.3| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) c... 163 2e-037
dbj|AP005250.3| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 163 2e-037
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
gb|AU165531.1|AU165531 AU165531 Rice panicle at flowering s... 115 3e-023
gb|C27582.1|C27582 C27582 Rice callus cDNA Oryza sativa (ja... 60 2e-006
gb|CB681747.1|CB681747 OSJNEf08G03.r OSJNEf Oryza sativa (j... 58 7e-006
dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA... 58 7e-006
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 58 7e-006
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 58 7e-006
gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|CV730758.1|CV730758 FLO--04-H15.b1 Rice flower lambda ph... 54 1e-004
dbj|AK064329.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK100100.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK101244.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AP003743.4| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|XM_476977.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|XM_506213.1| PREDICTED Oryza sativa (japonica cultivar-... 54 1e-004
ref|XM_506214.1| PREDICTED Oryza sativa (japonica cultivar-... 54 1e-004
dbj|AP003848.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AU075716.1|AU075716 AU075716 Rice panicle (between 3cm t... 48 0.007
gb|AU093966.1|AU093966 AU093966 Rice panicle at flowering s... 48 0.007
gb|AU164359.1|AU164359 AU164359 Rice panicle (between 3cm t... 48 0.007
gb|CA999061.1|CA999061 S234M_G10 Rice cold stress germinati... 44 0.10
gb|CB650947.1|CB650947 OSJNEb15L03.r OSJNEb Oryza sativa (j... 44 0.10
gb|CB651517.1|CB651517 OSJNEb16I04.r OSJNEb Oryza sativa (j... 44 0.10
gb|CB669055.1|CB669055 OSJNEe01E07.f OSJNEe Oryza sativa (j... 44 0.10
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 44 0.10
gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0582D05
Length = 150483
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 141780 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 141721
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 141720 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 141661
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 141660 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 141601
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 141600 ccatgcttac 141591
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 142082 ctactacatcaaaattgggatcaattacaggaataaggac 142043
>gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017194, whole
genome shotgun sequence
Length = 26448
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 6987 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 6928
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 6927 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 6868
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 6867 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 6808
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 6807 ccatgcttac 6798
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 7289 ctactacatcaaaattgggatcaattacaggaataaggac 7250
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0009H02
Length = 155388
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 24641 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 24582
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 24581 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 24522
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 24521 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 24462
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 24461 ccatgcttac 24452
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 24943 ctactacatcaaaattgggatcaattacaggaataaggac 24904
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 1509806 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 1509747
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 1509746 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 1509687
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 1509686 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 1509627
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 1509626 ccatgcttac 1509617
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 1510108 ctactacatcaaaattgggatcaattacaggaataaggac 1510069
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 1715982 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 1715923
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 1715922 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 1715863
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 1715862 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 1715803
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 1715802 ccatgcttac 1715793
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 1716284 ctactacatcaaaattgggatcaattacaggaataaggac 1716245
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 1715982 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 1715923
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 1715922 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 1715863
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 1715862 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 1715803
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 1715802 ccatgcttac 1715793
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 1716284 ctactacatcaaaattgggatcaattacaggaataaggac 1716245
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgcctgaccacggaccaacttatcccacaagcacagca 581
||||||||||||| ||||||||||| | || |||||| ||| ||||| | ||||||||
Sbjct: 1742280 gctatctgtagttgcagcaggatgctcggccctggaccagcttgtcccagaggcacagca 1742221
Query: 582 tctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggcaga 641
| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 1742220 tttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggcaga 1742161
Query: 642 acttccagctgtgggaatattggacaggatttgttgaattgaacttctcgacccataggc 701
||||||||||||||||||| | ||||||| || || ||||||||||| ||||| || |
Sbjct: 1742160 acttccagctgtgggaatacttgacaggagacgtggagttgaacttctcaacccacagcc 1742101
Query: 702 ccatgcttac 711
||||||||||
Sbjct: 1742100 ccatgcttac 1742091
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 1742582 ctactacatcaaaattgggatcaattacaggaataaggac 1742543
>gb|AU165531.1|AU165531 AU165531 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2183, mRNA sequence
Length = 712
Score = 115 bits (58), Expect = 3e-023
Identities = 129/150 (86%), Gaps = 2/150 (1%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgc-ctgaccacggaccaacttatcccacaag-cacag 579
||||||||||||| ||||||||||| | | || |||||| ||| ||||| | | |||||
Sbjct: 159 gctatctgtagttgcagcaggatgctcggccctgggaccagcttgtcccagagggcacag 100
Query: 580 catctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgtactggca 639
||| ||||| |||||||| || || |||||||| |||||||||||||| |||||||||||
Sbjct: 99 catttgcctcggtgactggtaatgcgccgtgtaatagttctccaggcagccgtactggca 40
Query: 640 gaacttccagctgtgggaatattggacagg 669
||||||||||||||||| ||| | ||||||
Sbjct: 39 gaacttccagctgtggggatacttgacagg 10
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 461 ctactacatcaaaattgggatcaattacaggaataaggac 422
>gb|C27582.1|C27582 C27582 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52276_1A, mRNA sequence
Length = 249
Score = 60.0 bits (30), Expect = 2e-006
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 573 agcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgt 632
|||||||||| |||| |||||||| || || |||||| ||||||| | || ||| |||
Sbjct: 180 agcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccga 121
Query: 633 actggcagaacttccagctgtg 654
||||||||||| ||||||||||
Sbjct: 120 actggcagaacctccagctgtg 99
>gb|CB681747.1|CB681747 OSJNEf08G03.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08G03 3', mRNA sequence
Length = 710
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 563 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 622
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 623 ctggcagaacctccagctgtg 643
>dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A12, full
insert sequence
Length = 2495
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 2016 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 1957
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 1956 ctggcagaacctccagctgtg 1936
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 57986 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 58045
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 58046 ctggcagaacctccagctgtg 58066
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 2225283 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 2225224
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 2225223 ctggcagaacctccagctgtg 2225203
>gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025522, whole
genome shotgun sequence
Length = 26935
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 20290 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 20349
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 20350 ctggcagaacctccagctgtg 20370
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 3074472 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 3074413
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 3074412 ctggcagaacctccagctgtg 3074392
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 22258118 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 22258059
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 22258058 ctggcagaacctccagctgtg 22258038
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 26053685 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 26053626
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 26053625 ctggcagaacctccagctgtg 26053605
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 58.0 bits (29), Expect = 7e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| |||||||| || || |||||| ||||||| | || ||| ||| |
Sbjct: 25981861 gcacagcatttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaa 25981802
Query: 634 ctggcagaacttccagctgtg 654
|||||||||| ||||||||||
Sbjct: 25981801 ctggcagaacctccagctgtg 25981781
>gb|CV730758.1|CV730758 FLO--04-H15.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-H15,
mRNA sequence
Length = 497
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 281 ttgaacttctcgacccacatgcccatgtttacatcttcc 243
>dbj|AK064329.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F09, full
insert sequence
Length = 1932
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 1335 ttgaacttctcgacccacatgcccatgtttacatcttcc 1297
>dbj|AK100100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004E20, full
insert sequence
Length = 2443
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 1869 ttgaacttctcgacccacatgcccatgtttacatcttcc 1831
>dbj|AK101244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A07, full
insert sequence
Length = 2439
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 1865 ttgaacttctcgacccacatgcccatgtttacatcttcc 1827
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1118_E12
Length = 119691
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 117545 ttgaacttctcgacccacatgcccatgtttacatcttcc 117583
>gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015343, whole
genome shotgun sequence
Length = 76647
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 39249 ttgaacttctcgacccacatgcccatgtttacatcttcc 39211
>ref|XM_476977.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2439
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 1865 ttgaacttctcgacccacatgcccatgtttacatcttcc 1827
>ref|XM_506213.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1715_A07.12 mRNA
Length = 2443
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 1869 ttgaacttctcgacccacatgcccatgtttacatcttcc 1831
>ref|XM_506214.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1715_A07.12 mRNA
Length = 1935
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 1338 ttgaacttctcgacccacatgcccatgtttacatcttcc 1300
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1715_A07
Length = 130907
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 28092 ttgaacttctcgacccacatgcccatgtttacatcttcc 28130
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 5117450 ttgaacttctcgacccacatgcccatgtttacatcttcc 5117488
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 2229615 ttgaacttctcgacccacatgcccatgtttacatcttcc 2229653
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 5046364 ttgaacttctcgacccacatgcccatgtttacatcttcc 5046402
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 680 ttgaacttctcgacccataggcccatgcttacatcttcc 718
||||||||||||||||| | ||||||| |||||||||||
Sbjct: 5161378 ttgaacttctcgacccacatgcccatgtttacatcttcc 5161416
>gb|AU075716.1|AU075716 AU075716 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40015_1A, mRNA sequence
Length = 290
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 135 ctactacatcaaaattgggatcaattacaggaataaggac 96
>gb|AU093966.1|AU093966 AU093966 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1451, mRNA sequence
Length = 663
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 412 ctactacatcaaaattgggatcaattacaggaataaggac 373
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 522 gctatctgtagttacagcaggatgc 546
||||||||||||| |||||||||||
Sbjct: 108 gctatctgtagttgcagcaggatgc 84
>gb|AU164359.1|AU164359 AU164359 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40272, mRNA sequence
Length = 282
Score = 48.1 bits (24), Expect = 0.007
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 103 ctactacatcaaaatt-ggatcaattacaagaacaaggac 141
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 127 ctactacatcaaaattgggatcaattacaggaataaggac 88
>gb|CA999061.1|CA999061 S234M_G10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 181 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 128
>gb|CB650947.1|CB650947 OSJNEb15L03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15L03 3', mRNA sequence
Length = 803
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 625 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 678
>gb|CB651517.1|CB651517 OSJNEb16I04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16I04 3', mRNA sequence
Length = 692
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 565 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 618
>gb|CB669055.1|CB669055 OSJNEe01E07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01E07 5', mRNA sequence
Length = 753
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 375 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 322
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence,
complete sequence
Length = 144487
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 1392 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 1339
>gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008116, whole
genome shotgun sequence
Length = 6612
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 1490 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 1543
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 6965740 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 6965793
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 34231903 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 34231956
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 33333673 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 33333726
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagta 615
|||||||||||| || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 33243163 cttatcccacaaacatagcatttgcctcggtgactggtaatgtgcagtgtagta 33243216
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 996,327
Number of Sequences: 438736
Number of extensions: 996327
Number of successful extensions: 4695
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4511
Number of HSP's gapped (non-prelim): 168
length of query: 725
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 704
effective length of database: 2,791,206,460
effective search space: 1965009347840
effective search space used: 1965009347840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)