BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 103 1e-019
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 60 1e-006
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP005579.3| Oryza sativa (japonica cultivar-group) geno... 44 0.088
gb|AACV01020008.1| Oryza sativa (japonica cultivar-group) c... 44 0.088
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.088
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.088
gb|AC135209.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|AACV01006292.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 42 0.35
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 103 bits (52), Expect = 1e-019
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 320 ctcaagaagggtatgaaggttttggatgtgggatgtggaattgggggacctttaatagaa 379
||||||||||| |||||||| | || ||||| ||||| ||||| ||||| || | |||
Sbjct: 238 ctcaagaagggcatgaaggtcctagacgtggggtgtggcattggaggacccttgagagag 297
Query: 380 atcgccagattcagctcaacatcgataactggactgaacaacaatgactaccacatctca 439
|| ||||||||||||||| ||||| | ||||||||||||||||||| ||||| || |||
Sbjct: 298 attgccagattcagctcagcatcggtgactggactgaacaacaatgcgtaccagatatca 357
Query: 440 aggggcaaggagctca 455
||||||||||| ||||
Sbjct: 358 aggggcaaggaactca 373
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 43694 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 43751
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 7809 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 7756
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 7330 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 7387
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 2456 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 2509
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 110862 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 110805
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 1963963 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 1963910
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 7170340 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 7170283
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 9819007 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 9818954
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 34436503 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 34436446
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 9098982 atcaaggaagtcaaattacac 9099002
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 33544927 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 33544870
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 8933982 atcaaggaagtcaaattacac 8934002
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 10818289 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 10818236
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||| ||||| | ||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 33454417 agctcagcatcggtgactggactgaacaacaatgcgtaccagatatcaaggggcaagg 33454360
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 8936147 atcaaggaagtcaaattacac 8936167
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 7809 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 7756
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggc 445
|||||| ||||| | |||||| ||||||||||||||||||| || |||||||||
Sbjct: 10897478 agctcagcatcggtgactggattgaacaacaatgactaccagatatcaaggggc 10897425
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1740_D06
Length = 187410
Score = 44.1 bits (22), Expect = 0.088
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 ggaagtcaaattacactgattt 251
||||||||||||||||||||||
Sbjct: 77459 ggaagtcaaattacactgattt 77480
>gb|AACV01020008.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020008, whole
genome shotgun sequence
Length = 23956
Score = 44.1 bits (22), Expect = 0.088
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 230 ggaagtcaaattacactgattt 251
||||||||||||||||||||||
Sbjct: 10841 ggaagtcaaattacactgattt 10820
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 44.1 bits (22), Expect = 0.088
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 ggaagtcaaattacactgattt 251
||||||||||||||||||||||
Sbjct: 875286 ggaagtcaaattacactgattt 875307
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 44.1 bits (22), Expect = 0.088
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 ggaagtcaaattacactgattt 251
||||||||||||||||||||||
Sbjct: 4505213 ggaagtcaaattacactgattt 4505234
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 44.1 bits (22), Expect = 0.088
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 ggaagtcaaattacactgattt 251
||||||||||||||||||||||
Sbjct: 13979024 ggaagtcaaattacactgattt 13979045
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.088
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 ggaagtcaaattacactgattt 251
||||||||||||||||||||||
Sbjct: 15183483 ggaagtcaaattacactgattt 15183504
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0071M09, complete sequence
Length = 143595
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 61008 atcaaggaagtcaaattacac 61028
>gb|AACV01006292.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006292, whole
genome shotgun sequence
Length = 10699
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 4215 atcaaggaagtcaaattacac 4235
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 279798 atcaaggaagtcaaattacac 279818
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 atcaaggaagtcaaattacac 245
|||||||||||||||||||||
Sbjct: 8906620 atcaaggaagtcaaattacac 8906640
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 761,264
Number of Sequences: 438736
Number of extensions: 761264
Number of successful extensions: 13399
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12891
Number of HSP's gapped (non-prelim): 508
length of query: 619
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 598
effective length of database: 2,791,206,460
effective search space: 1669141463080
effective search space used: 1669141463080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)