BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_463619.1| Oryza sativa (japonica cultivar-group), p... 720 0.0
dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA... 684 0.0
gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-grou... 567 e-158
dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate... 567 e-158
gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) c... 567 e-158
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 567 e-158
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 567 e-158
dbj|AP003437.3| Oryza sativa (japonica cultivar-group) geno... 567 e-158
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 567 e-158
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 567 e-158
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 567 e-158
dbj|AG205918.1| Oryza sativa (japonica cultivar-group) DNA,... 454 e-124
dbj|AG213996.1| Oryza sativa (japonica cultivar-group) DNA,... 426 e-116
dbj|AG024164.1| Oryza sativa (japonica cultivar-group) DNA,... 420 e-114
dbj|AG023731.1| Oryza sativa (japonica cultivar-group) DNA,... 333 4e-088
gb|AU094286.1|AU094286 AU094286 Rice panicle at flowering s... 234 3e-058
gb|CG408661.1|CG408661 Ds353 Ds insertion lines Oryza sativ... 228 2e-056
dbj|AG024022.1| Oryza sativa (japonica cultivar-group) DNA,... 224 3e-055
gb|C73370.1|C73370 C73370 Rice panicle at flowering stage O... 222 1e-054
dbj|AG213062.1| Oryza sativa (japonica cultivar-group) DNA,... 186 6e-044
dbj|AG209514.1| Oryza sativa (japonica cultivar-group) DNA,... 184 2e-043
dbj|AG213044.1| Oryza sativa (japonica cultivar-group) DNA,... 167 5e-038
dbj|AG208863.1| Oryza sativa (japonica cultivar-group) DNA,... 100 1e-017
dbj|AG210281.1| Oryza sativa (japonica cultivar-group) DNA,... 82 2e-012
dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA... 78 4e-011
dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA... 78 4e-011
dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA... 78 4e-011
ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA 78 4e-011
ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-... 78 4e-011
ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-... 78 4e-011
gb|AACV01022679.1| Oryza sativa (japonica cultivar-group) c... 68 4e-008
gb|CH401260.1| Oryza sativa (japonica cultivar-group) chrom... 68 4e-008
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 68 4e-008
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 68 4e-008
gb|AC147811.2| Oryza sativa (japonica cultivar-group) chrom... 68 4e-008
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 68 4e-008
gb|CB678310.1|CB678310 OSJNEe16B12.f OSJNEe Oryza sativa (j... 60 9e-006
dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA... 60 9e-006
dbj|AP004041.2| Oryza sativa (japonica cultivar-group) geno... 60 9e-006
gb|AACV01017982.1| Oryza sativa (japonica cultivar-group) c... 60 9e-006
dbj|BA000044.2| Oryza sativa (japonica cultivar-group) geno... 60 9e-006
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 60 9e-006
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 60 9e-006
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 60 9e-006
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 60 9e-006
gb|AY360393.2| Oryza sativa (japonica cultivar-group) chrom... 60 9e-006
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 58 3e-005
gb|AC135258.2| Oryza sativa (japonica cultivar-group) chrom... 58 3e-005
dbj|AG021278.1| Oryza sativa (japonica cultivar-group) DNA,... 56 1e-004
ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-004
dbj|AP004066.2| Oryza sativa (japonica cultivar-group) geno... 52 0.002
gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) c... 52 0.002
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 52 0.002
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.002
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.002
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 52 0.002
dbj|AP003751.1| Oryza sativa (japonica cultivar-group) chro... 46 0.13
dbj|AP004575.1| Oryza sativa (japonica cultivar-group) chro... 46 0.13
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 46 0.13
gb|AACV01013343.1| Oryza sativa (japonica cultivar-group) c... 46 0.13
gb|AACV01016477.1| Oryza sativa (japonica cultivar-group) c... 46 0.13
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 46 0.13
dbj|AP005810.4| Oryza sativa (japonica cultivar-group) geno... 46 0.13
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.13
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.13
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.13
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.13
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.13
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.13
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.13
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3303
Score = 720 bits (363), Expect = 0.0
Identities = 761/893 (85%), Gaps = 3/893 (0%)
Strand = Plus / Plus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 559 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 618
Query: 628 gagaagaagctttacattgtgctcatcagcgtgcatggtcttgttcgtggagaaaacatg 687
||||| ||||| ||||||||||||||||| | |||||||| |||||||| || ||||||
Sbjct: 619 gagaaaaagctgtacattgtgctcatcagtcttcatggtctagttcgtggcgataacatg 678
Query: 688 gaactaggtcgtgattctgatacaggtggccaggtgaaatatgtggtcgaacttgcaaga 747
||||| ||||| ||||| ||||| || || |||||||||||||| || ||||| ||||||
Sbjct: 679 gaacttggtcgggattcagatactggaggacaggtgaaatatgttgttgaactcgcaaga 738
Query: 748 gcgatgtcaatgatgcctggagtgtacagggtggacctcttcactcgtcaagtgtcatct 807
|| | ||||||||||||| |||||||| ||||| || || ||||||||||||||||||
Sbjct: 739 gcacttgcaatgatgcctggcgtgtacagagtggatctgtttactcgtcaagtgtcatct 798
Query: 808 cttgacgtggactggagctacggtgagccaaccgagatgttatgcgccggttccaatgat 867
| ||| |||||||||||||| || ||||| || || |||||| | ||||||||| |||
Sbjct: 799 cctgaagtggactggagctatggggagcctactgaaatgttaacctccggttccactgac 858
Query: 868 ggagaggggatgggtgagagtggcggagcctacattgtgcgcataccgtgtgggccgcgg 927
|||||||| | |||||||||| || || |||||||||||||| ||||| || || ||
Sbjct: 859 ggagagggaagcggtgagagtgctggtgcgtacattgtgcgcattccgtgcggtccaagg 918
Query: 928 gataaatacctcaagaaggaagcgttgtggccttacctccaagagtttgtcgatggagcc 987
|| || |||||| || || || |||||||||||||||||||||||||||| |||||
Sbjct: 919 gacaagtacctccgtaaagaggccctgtggccttacctccaagagtttgtcgacggagct 978
Query: 988 cttgcgcatatcctgaacatgtccaaggctctgggagagcaggttggaaatgggaggcca 1047
|| |||||||||||||||||||||||||||||||| || |||||| | ||||||| ||
Sbjct: 979 ctcgcgcatatcctgaacatgtccaaggctctgggggaacaggttagcaatgggaagctg 1038
Query: 1048 gtactgccttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctt 1107
|| |||| || || || ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 1039 gtcttgccatatgtaatccatggccactatgccgatgctggagatgtcgctgctcttctt 1098
Query: 1108 tctggtgcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctg 1167
|||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||
Sbjct: 1099 tctggtgcgctgaatgtgccgatggttctcaccggtcattcacttgggaggaacaagctg 1158
Query: 1168 gaacaactgctgaagcaagggcgcatgtccaaggaggagatcgattcgacatacaagatc 1227
|| || | ||||||||||||||||||| ||||||||||| || || || |||||||||
Sbjct: 1159 gagcagatcatgaagcaagggcgcatgtcgaaggaggagattgactcaacttacaagatc 1218
Query: 1228 atgaggcgtatcgagggtgaggagctggccctggatgcgtcagagcttgtaatcacgagc 1287
|||||||| || |||||||||||||||||| ||||||| | |||||||| || |||||
Sbjct: 1219 atgaggcgcattgagggtgaggagctggccttggatgcagcggagcttgtcataacgagt 1278
Query: 1288 acaaggcaggagattgatgagcagtggggattgtacgatggatttgatgtcaagcttgag 1347
||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||| |||
Sbjct: 1279 acaaggcaggagattgatgagcaatggggactgtatgatggctttgatgtcaagctagag 1338
Query: 1348 aaagtgctgagggcacgggcgaggcgcggggttagctgccatggtcgttacatgcctagg 1407
||||| ||||||| || ||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 1339 aaagttttgagggctcgtgcgaggcgcggagttagctgccacggccgttttatgcctaga 1398
Query: 1408 atggtggtgattcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| |||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 1399 atggtggtaattcctcctgggatggatttcagcagtgttgtggttcctgaaga 1451
Score = 593 bits (299), Expect = e-166
Identities = 640/753 (84%), Gaps = 3/753 (0%)
Strand = Plus / Plus
Query: 1521 gtcaatgcccccaatttgggccgaagtgatgcggttcctgaccaaccctcacaagccgat 1580
|||| |||||||||| ||||| || ||||||||||| ||||||| || |||||||| ||
Sbjct: 1500 gtcactgcccccaatctgggctgaggtgatgcggtttttgaccaatccccacaagccaat 1559
Query: 1581 gatcctggcgttatcaagaccagacccgaagaagaacatcactaccctcgtcaaagcgtt 1640
||| ||||| | |||||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct: 1560 gattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtcaaagcatt 1619
Query: 1641 tggagagtgtcgtccactcagggaacttgcaaaccttactctgatcatgggtaacagaga 1700
|||||| ||||| ||||| ||||||||||||||||| | |||||||||||| ||||| ||
Sbjct: 1620 tggagaatgtcgcccactgagggaacttgcaaacctaattctgatcatggggaacaggga 1679
Query: 1701 tgacatcgacgacatgtctgctggcaatgccagtgtcctcaccacagttctgaagctgat 1760
||||||||| || ||||| ||||||||||| || ||||||||||| || |||||||||||
Sbjct: 1680 tgacatcgatgagatgtccgctggcaatgcaagcgtcctcaccactgtcctgaagctgat 1739
Query: 1761 tgacaagtatgatctgtacggaagcgtggcgttccctaagcatcacaatcaggctgacgt 1820
||||||||||||||||||||||| || || ||||| ||||||||||| ||| | |||||
Sbjct: 1740 cgacaagtatgatctgtacggaagtgttgcattccccaagcatcacaagcagtcagacgt 1799
Query: 1821 cccggagatctatcgcctcgcggccaaaatgaagggcgtcttcatcaaccctgctctcgt 1880
|||||||| ||||||||| | | || |||||||||||||||||||| |||||||| ||
Sbjct: 1800 accggagatttatcgcctcacagggaagatgaagggcgtcttcatcaatcctgctcttgt 1859
Query: 1881 tgagccgtttggtctcaccctgatcgaggctgcggcacacggactcccgatagtcgctac 1940
|||||| || |||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 1860 tgagcctttcggtctcaccctgatcgaggctgcggctcacggtctcccgatcgtcgccac 1919
Query: 1941 caagaatggtggtccggtcgacattacaaatgcattaaacaacggactgctcgttgaccc 2000
|||||| || |||||||| ||||||| |||||| | ||||| |||||||| || |||||
Sbjct: 1920 caagaacggcggtccggttgacattaaaaatgctctgaacaatggactgctggtagaccc 1979
Query: 2001 acacgaccagaacgccatcgctgatgcactgctgaagcttgtggcagacaagaacctgtg 2060
|| |||||| ||||||| || || || ||||||||||| ||||| ||||||||||||||
Sbjct: 1980 gcatgaccagcacgccattgccgacgcgctgctgaagctggtggcggacaagaacctgtg 2039
Query: 2061 gcaggaatgccggagaaacgggctgcgcaacatccacctctactcatggccggagcactg 2120
|||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||
Sbjct: 2040 gcaggagtgccggaagaacggcctgcgcaacatccagctctactcgtggccggagcattg 2099
Query: 2121 ccgcacttacctcaccagggtggccgggtgccggttaaggaacccgaggtggctgaagga 2180
||| || |||||||||||| | ||||| |||||| | ||||||||| | ||||||| |||
Sbjct: 2100 ccggacatacctcaccaggatagccggatgccggatcaggaacccgcgctggctgatgga 2159
Query: 2181 cacaccagcagatgccggagccgatgaggaggagttcctggaggattc---catggacgc 2237
||| || || || || | ||||| |||||||| ||||||||| || ||||||||
Sbjct: 2160 cacgccggcggacgcggccgccgaggaggaggaagccctggaggactcgctcatggacgt 2219
Query: 2238 tcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || || || ||||||||||||||
Sbjct: 2220 ccaggacctctcgctgcgcctgtccatcgacgg 2252
Score = 333 bits (168), Expect = 4e-088
Identities = 383/452 (84%), Gaps = 2/452 (0%)
Strand = Plus / Plus
Query: 2884 cactgtgtcgcgttcctcatcaaagacccccaaaaggtgaaaacggtcgatgagatgagg 2943
||||||||| | ||| |||||||||||||| | ||||||| ||| ||||||||||| ||
Sbjct: 2851 cactgtgtctccttcttcatcaaagaccccaataaggtgaggacgatcgatgagatgcgg 2910
Query: 2944 gagcggctgaggatgcgtggtctccgctgccacatcatgtactgcaggaactcgacaagg 3003
||| || ||||||||||||| ||||| ||||| |||||||||||||||| | ||||||
Sbjct: 2911 gagagggtgaggatgcgtggcctccgatgccatctcatgtactgcaggaatgcaacaagg 2970
Query: 3004 cttcaggttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgc 3063
||||| ||||| ||||| |||||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 2971 cttcaagttgttcctcttctagcatcgaggtcacaagcactcaggtatcttttcgtacgc 3030
Query: 3064 tggggcgtatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatcta 3123
|||||| | |||||||| ||||||||||||||| |||||| || |||||||||||||
Sbjct: 3031 tggggcctgtctgtgggaaacatgtatctgatcgtcggggagcacggcgacaccgatcac 3090
Query: 3124 gaggagatgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaagggt 3183
||||||||||| || ||| |||||||||| |||||| |||| |||||||||||||||||
Sbjct: 3091 gaggagatgctgtcagggttacacaagacggtgatcatccgcggcgtcaccgagaagggc 3150
Query: 3184 tcggaagca-ctggtgaggagcccaggaagctacaagagggacgatgtcgtcccgtctga 3242
|||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||||| || ||
Sbjct: 3151 tcgg-agcagctggtgaggagctcagggagttaccagagggaagatgttgtcccatccga 3209
Query: 3243 gacccccttggctgcgtacacgactggtgagctgaaggccgacgagatcatgcgggctct 3302
|| ||||||| ||| | ||| | ||||| ||||||||||| ||||||||||| |||||
Sbjct: 3210 gagccccttgattgctttcacaaagggtgatctgaaggccgatgagatcatgcgtgctct 3269
Query: 3303 gaagcaagtctccaagacttccagcggcatgt 3334
||| | ||| ||||| || |||| |||||||
Sbjct: 3270 caaggaggtcaccaaggctgccagtggcatgt 3301
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Plus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 2402 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 2461
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 2462 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 2521
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 2522 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 2581
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 2582 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 2641
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 2642 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 2701
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 2702 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 2761
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 2762 ctcacgacggcgccaagcagaccattgccaagctc 2796
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Plus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 162 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 221
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 281
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 282 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 341
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 342 cgcgagaaagaagaagcag 360
Score = 77.8 bits (39), Expect = 4e-011
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 423 gctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcaggtgcg 482
||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||||||
Sbjct: 408 gctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcaggtgcg 467
Query: 483 tcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagacaccat 542
|| ||| | |||||||||| || |||||||||| ||||||||||||| |||||| |
Sbjct: 468 ccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggacaccgt 527
Query: 543 cgg 545
|||
Sbjct: 528 cgg 530
Score = 69.9 bits (35), Expect = 9e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 112 atggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 1 atggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 51
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 2305 gtgcagaggatcatgaacaagatcaagcggtcgtc 2339
>dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full
insert sequence
Length = 3825
Score = 684 bits (345), Expect = 0.0
Identities = 760/895 (84%), Gaps = 5/895 (0%)
Strand = Plus / Plus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 740 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 799
Query: 628 gagaagaagctttacattgtgctcatcagcgtgcatggtcttgttcgtggagaaaacatg 687
||||| ||||| ||||||||||||||||| | |||||||| |||||||| || ||||||
Sbjct: 800 gagaaaaagctgtacattgtgctcatcagtcttcatggtctagttcgtggcgataacatg 859
Query: 688 gaactaggtcgtgattctgatacaggtggccaggtgaaatatgtggtcgaa-cttgcaag 746
||||| ||||| ||||| ||||| || || |||||||||||||| || ||| || |||||
Sbjct: 860 gaacttggtcgggattcagatactggaggacaggtgaaatatgttgttgaagctcgcaag 919
Query: 747 agcgatgtcaatgatgcctgga-gtgtacagggtggacctcttcactcgtcaagtgtcat 805
||| | ||||||||||||| |||||||| ||||| || | ||||||||||||||||
Sbjct: 920 agcacttgcaatgatgcctgggcgtgtacagagtggatctgcttactcgtcaagtgtcat 979
Query: 806 ctcttgacgtggactggagctacggtgagccaaccgagatgttatgcgccggttccaatg 865
||| ||| |||||||||||||| || ||||| || || |||||| | ||||||||| ||
Sbjct: 980 ctcctgaagtggactggagctatggggagcctactgaaatgttaacctccggttccactg 1039
Query: 866 atggagaggggatgggtgagagtggcggagcctacattgtgcgcataccgtgtgggccgc 925
| |||||||| | |||||||||| || || |||||||||||||| ||||| || ||
Sbjct: 1040 acggagagggaagcggtgagagtgctggtgcgtacattgtgcgcattccgtgcggtccaa 1099
Query: 926 gggataaatacctcaagaaggaagcgttgtggccttacctccaagagtttgtcgatggag 985
|||| || |||||| || || || |||||||||||||||||||||||||||| ||||
Sbjct: 1100 gggacaagtacctccgtaaagaggccctgtggccttacctccaagagtttgtcgacggag 1159
Query: 986 cccttgcgcatatcctgaacatgtccaaggctctgggagagcaggttggaaatgggaggc 1045
| || |||||||||||||||||||||||||||||||| || |||||| | ||||||| ||
Sbjct: 1160 ctctcgcgcatatcctgaacatgtccaaggctctgggggaacaggttagcaatgggaagc 1219
Query: 1046 cagtactgccttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcc 1105
|| |||| || || || ||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 1220 tggtcttgccatatgtaatccatggccactatgccgatgctggagatgtcgctgctcttc 1279
Query: 1106 tttctggtgcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagc 1165
|||||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||
Sbjct: 1280 tttctggtgcgctgaatgtgccgatggttctcaccggtcattcacttgggaggaacaagc 1339
Query: 1166 tggaacaactgctgaagcaagggcgcatgtccaaggaggagatcgattcgacatacaaga 1225
|||| || | ||||||||||||||||||| ||||||||||| || || || |||||||
Sbjct: 1340 tggagcagatcatgaagcaagggcgcatgtcgaaggaggagattgactcaacttacaaga 1399
Query: 1226 tcatgaggcgtatcgagggtgaggagctggccctggatgcgtcagagcttgtaatcacga 1285
|||||||||| || |||||||||||||||||| ||||||| | |||||||| || ||||
Sbjct: 1400 tcatgaggcgcattgagggtgaggagctggccttggatgcagcggagcttgtcataacga 1459
Query: 1286 gcacaaggcaggagattgatgagcagtggggattgtacgatggatttgatgtcaagcttg 1345
| ||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||| |
Sbjct: 1460 gtacaaggcaggagattgatgagcaatggggactgtatgatggctttgatgtcaagctag 1519
Query: 1346 agaaagtgctgagggcacgggcgaggcgcggggttagctgccatggtcgttacatgccta 1405
||||||| ||||||| || ||||||||||| ||||||||||| || |||| |||||||
Sbjct: 1520 agaaagttttgagggctcgtgcgaggcgcggagttagctgccacggccgttttatgccta 1579
Query: 1406 ggatggtggtgattcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
| |||||||| |||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 1580 gaatggtggtaattcctcctgggatggatttcagcagtgttgtggttcctgaaga 1634
Score = 577 bits (291), Expect = e-161
Identities = 570/663 (85%)
Strand = Plus / Plus
Query: 1521 gtcaatgcccccaatttgggccgaagtgatgcggttcctgaccaaccctcacaagccgat 1580
|||| |||||||||| |||| || ||||||||||| ||||||| || |||||||| ||
Sbjct: 1683 gtcactgcccccaatccgggctgaggtgatgcggtttttgaccaatccccacaagccaat 1742
Query: 1581 gatcctggcgttatcaagaccagacccgaagaagaacatcactaccctcgtcaaagcgtt 1640
||| ||||| | |||||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct: 1743 gattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtcaaagcatt 1802
Query: 1641 tggagagtgtcgtccactcagggaacttgcaaaccttactctgatcatgggtaacagaga 1700
|||||| ||||| ||||| ||||||||||||||||| | |||||||||||| ||||| ||
Sbjct: 1803 tggagaatgtcgcccactgagggaacttgcaaacctaattctgatcatggggaacaggga 1862
Query: 1701 tgacatcgacgacatgtctgctggcaatgccagtgtcctcaccacagttctgaagctgat 1760
||||||||| || ||||| ||||||||||| || ||||||||||| || |||||||||||
Sbjct: 1863 tgacatcgatgagatgtccgctggcaatgcaagcgtcctcaccactgtcctgaagctgat 1922
Query: 1761 tgacaagtatgatctgtacggaagcgtggcgttccctaagcatcacaatcaggctgacgt 1820
||||||||||||||||||||||| || || ||||| ||||||||||| ||| | |||||
Sbjct: 1923 cgacaagtatgatctgtacggaagtgttgcattccccaagcatcacaagcagtcagacgt 1982
Query: 1821 cccggagatctatcgcctcgcggccaaaatgaagggcgtcttcatcaaccctgctctcgt 1880
|||||||| ||||||||| | | || |||||||||||||||||||| |||||||| ||
Sbjct: 1983 accggagatttatcgcctcacagggaagatgaagggcgtcttcatcaatcctgctcttgt 2042
Query: 1881 tgagccgtttggtctcaccctgatcgaggctgcggcacacggactcccgatagtcgctac 1940
|||||| || |||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 2043 tgagcctttcggtctcaccctgatcgaggctgcggctcacggtctcccgatcgtcgccac 2102
Query: 1941 caagaatggtggtccggtcgacattacaaatgcattaaacaacggactgctcgttgaccc 2000
|||||| || |||||||| ||||||| |||||| | ||||| |||||||| || |||||
Sbjct: 2103 caagaacggcggtccggttgacattaaaaatgctctgaacaatggactgctggtagaccc 2162
Query: 2001 acacgaccagaacgccatcgctgatgcactgctgaagcttgtggcagacaagaacctgtg 2060
|| |||||| ||||||| || || || ||||||||||| ||||| ||||||||||||||
Sbjct: 2163 gcatgaccagcacgccattgccgacgcgctgctgaagctggtggcggacaagaacctgtg 2222
Query: 2061 gcaggaatgccggagaaacgggctgcgcaacatccacctctactcatggccggagcactg 2120
|||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||
Sbjct: 2223 gcaggagtgccggaagaacggcctgcgcaacatccagctctactcgtggccggagcattg 2282
Query: 2121 ccgcacttacctcaccagggtggccgggtgccggttaaggaacccgaggtggctgaagga 2180
||| || |||||||||||| | ||||| |||||| | ||||||||| | ||||||| |||
Sbjct: 2283 ccggacatacctcaccaggatagccggatgccggatcaggaacccgcgctggctgatgga 2342
Query: 2181 cac 2183
|||
Sbjct: 2343 cac 2345
Score = 335 bits (169), Expect = 1e-088
Identities = 387/457 (84%), Gaps = 2/457 (0%)
Strand = Plus / Plus
Query: 2884 cactgtgtcgcgttcctcatcaaagacccccaaaaggtgaaaacggtcgatgagatgagg 2943
||||||||| | ||| |||||||||||||| | ||||||| ||| ||||||||||| ||
Sbjct: 3035 cactgtgtctccttcttcatcaaagaccccaataaggtgaggacgatcgatgagatgcgg 3094
Query: 2944 gagcggctgaggatgcgtggtctccgctgccacatcatgtactgcaggaactcgacaagg 3003
||| || ||||||||||||| ||||| ||||| |||||||||||||||| | ||||||
Sbjct: 3095 gagagggtgaggatgcgtggcctccgatgccatctcatgtactgcaggaatgcaacaagg 3154
Query: 3004 cttcaggttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgc 3063
||||| ||||| ||||| |||||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 3155 cttcaagttgttcctcttctagcatcgaggtcacaagcactcaggtatcttttcgtacgc 3214
Query: 3064 tggggcgtatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatcta 3123
|||||| | |||||||| ||||||||||||||| |||||| || |||||||||||||
Sbjct: 3215 tggggcctgtctgtgggaaacatgtatctgatcgtcggggagcacggcgacaccgatcac 3274
Query: 3124 gaggagatgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaagggt 3183
||||||||||| || ||| |||||||||| |||||| |||| |||||||||||||||||
Sbjct: 3275 gaggagatgctgtcagggttacacaagacggtgatcatccgcggcgtcaccgagaagggc 3334
Query: 3184 tcggaagca-ctggtgaggagcccaggaagctacaagagggacgatgtcgtcccgtctga 3242
|||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||||| || ||
Sbjct: 3335 tcgg-agcagctggtgaggagctcagggagttaccagagggaagatgttgtcccatccga 3393
Query: 3243 gacccccttggctgcgtacacgactggtgagctgaaggccgacgagatcatgcgggctct 3302
|| ||||||| ||| | ||| | ||||| ||||||||||| ||||||||||| |||||
Sbjct: 3394 gagccccttgattgctttcacaaagggtgatctgaaggccgatgagatcatgcgtgctct 3453
Query: 3303 gaagcaagtctccaagacttccagcggcatgtgaatt 3339
||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 3454 caaggaggtcaccaaggctgccagtggcatgtaaatt 3490
Score = 335 bits (169), Expect = 1e-088
Identities = 268/301 (89%)
Strand = Plus / Plus
Query: 245 cgcacatgaacttcaacccctcgcactacttcgtcgaggaggtggtcaagggcgtcgacg 304
|||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 411 cgcacatgaacttcaatccgacgcactacttcgtggaggaggtggtgaagggcgtcgacg 470
Query: 305 agagcgacctccaccggacgtggatcaaggtcgtcgccacccgcaacgcccgcgagcgca 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 471 agagcgacctccaccggacgtggatcaaggtcgtcgccacccgcaacgcccgcgagcgga 530
Query: 365 gcaccaggctcgagaacatgtgctggcggatctggcacctcgcgcgcaagaagaagcagc 424
||||| | |||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 531 gcacccgcctcgagaacatgtgctggcgcatctggcacctcgcgagaaagaagaagcagc 590
Query: 425 tggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcaggtgcgtc 484
||||||| ||||| |||| ||| || || ||| | |||||||| |||||||||||||| |
Sbjct: 591 tggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcaggtgcgcc 650
Query: 485 gtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagacaccatcg 544
| ||| | | |||||||| || |||||||||| ||||||||||||| |||||| |||
Sbjct: 651 gcgagacttctgaggaccttgcagaggatctgtttgaaggcgagaaggcggacaccgtcg 710
Query: 545 g 545
|
Sbjct: 711 g 711
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Plus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 2586 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 2645
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 2646 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 2705
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 2706 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 2765
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 2766 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 2825
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 2826 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 2885
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 2886 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 2945
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 2946 ctcacgacggcgccaagcagaccattgccaagctc 2980
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 2489 gtgcagaggatcatgaacaagatcaagcggtcgtc 2523
>gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0678F11, ***
SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 155574
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Plus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 113861 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 113920
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 113921 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 113980
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 113981 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 114040
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 114041 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 114100
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 114101 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 114160
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 114161 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 114220
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 114221 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 114280
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 114281 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 114340
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 114341 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 114400
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 114401 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 114460
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 114461 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 114520
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 114521 gttagctgccacggccgttttatgcctagaatggtggt 114558
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Plus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 116382 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 116441
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 116442 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 116501
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 116502 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 116561
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 116562 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 116621
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 116622 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 116681
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 116682 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 116741
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 116742 ctcacgacggcgccaagcagaccattgccaagctc 116776
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Plus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 112495 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 112554
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112555 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 112614
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 112615 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 112674
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 112675 cgcgagaaagaagaagcag 112693
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 117196 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 117255
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 117256 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 117315
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 117316 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 117374
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 117375 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 117434
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 117435 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 117491
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Plus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 115937 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 115996
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 115997 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 116056
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 116057 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 116116
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 116117 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 116176
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 116177 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 116232
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Plus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 115354 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 115413
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 115414 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 115473
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 115474 gcatcacaagcagtcagacgtaccggagatttatcgcctc 115513
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Plus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 116988 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 117047
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 117048 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 117107
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 114908 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 114967
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 114968 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 115027
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 115028 cttgcaaacct 115038
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 113483 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 113542
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 113543 gagaaaaagctgtacattgtgctcatcag 113571
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 113328 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 113387
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 113388 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 113447
Query: 539 ccatcgg 545
|| ||||
Sbjct: 113448 ccgtcgg 113454
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 115635 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 115691
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 112333 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 112384
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 113672 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 113721
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 114709 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 114752
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 116285 gtgcagaggatcatgaacaagatcaagcggtcgtc 116319
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds
Length = 9181
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Plus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 4700 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 4759
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 4760 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 4819
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 4820 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 4879
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 4880 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 4939
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 4940 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 4999
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 5000 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 5059
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 5060 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 5119
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 5120 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 5179
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 5180 aaggaggagatggactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 5239
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 5240 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 5299
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 5300 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 5359
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 5360 gttagctgccacggccgttttatgcctagaatggtggt 5397
Score = 301 bits (152), Expect = 1e-078
Identities = 334/395 (84%)
Strand = Plus / Plus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 7228 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 7287
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 7288 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 7347
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| | |
Sbjct: 7348 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggnga 7407
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 7408 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 7467
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 7468 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 7527
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 7528 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 7587
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 7588 ctcacgacggcgccaagcagaccattgccaagctc 7622
Score = 274 bits (138), Expect = 3e-070
Identities = 180/194 (92%)
Strand = Plus / Plus
Query: 230 cgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgaggaggtgg 289
||||||| || ||| |||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 3340 cgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggaggaggtgg 3399
Query: 290 tcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccacccgca 349
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3400 tgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccacccgca 3459
Query: 350 acgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacctcgcgc 409
||||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 3460 acgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacctcgcga 3519
Query: 410 gcaagaagaagcag 423
| ||||||||||||
Sbjct: 3520 gaaagaagaagcag 3533
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 8042 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 8101
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 8102 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 8161
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 8162 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 8220
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 8221 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 8280
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 8281 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 8337
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Plus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 6783 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 6842
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 6843 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 6902
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 6903 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 6962
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 6963 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 7022
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 7023 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 7078
Score = 131 bits (66), Expect = 3e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1686 catgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcctcaccac 1745
|||||| | ||| ||||||||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 6206 catggggaccagggatgacatcgatgggatgtccgctggcaatgcaagcgtcctcaccac 6265
Query: 1746 agttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaagcatca 1805
|| ||||||||||| ||||||||||||||||||||||| || || ||||| ||| ||||
Sbjct: 6266 tgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaagtatca 6325
Query: 1806 caatcaggctgacgtcccggagatctatcgcctc 1839
||| ||| | ||||| |||||||| |||||||||
Sbjct: 6326 caagcagtcagacgtaccggagatttatcgcctc 6359
Score = 115 bits (58), Expect = 2e-022
Identities = 103/118 (87%)
Strand = Plus / Plus
Query: 2932 gatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgcagg 2991
||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 7836 gatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgcagg 7895
Query: 2992 aactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 7896 aatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 7953
Score = 113 bits (57), Expect = 7e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 1560 gaccaaccctcacaagccgatgatcctggcgttatcaagaccagacccgaagaagaacat 1619
|||||| || |||||||| ||||||||||| | |||||||| || || |||||||||||
Sbjct: 5768 gaccaatccccacaagccaatgatcctggctctgtcaagacctgatccaaagaagaacat 5827
Query: 1620 cactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaacttgcaaacct 1676
||| ||||| |||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 5828 caccacccttgtcaaagcatttggagaatgtcgcccactgagggaacttgcaaacct 5884
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 4321 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 4380
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 4381 gagaaaaagctgtacattgtgctcatcag 4409
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 4166 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 4225
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 4226 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 4285
Query: 539 ccatcgg 545
|| ||||
Sbjct: 4286 ccgtcgg 4292
Score = 73.8 bits (37), Expect = 6e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| || ||||| |||||||| || |||||||||||||||||||
Sbjct: 6481 agggcgtcttcatcaatccagctcttgttgagcctttcggtctcaccctgatcgagg 6537
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 3173 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 3224
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 4511 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 4560
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 5549 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 5592
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 7131 gtgcagaggatcatgaacaagatcaagcggtcgtc 7165
>gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002933, whole
genome shotgun sequence
Length = 31042
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Plus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 9113 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 9172
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 9173 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 9232
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 9233 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 9292
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 9293 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 9352
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 9353 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 9412
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 9413 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 9472
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 9473 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 9532
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 9533 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 9592
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 9593 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 9652
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 9653 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 9712
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 9713 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 9772
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 9773 gttagctgccacggccgttttatgcctagaatggtggt 9810
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Plus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 11634 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 11693
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 11694 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 11753
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 11754 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 11813
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 11814 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 11873
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 11874 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtttgg 11933
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 11934 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 11993
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 11994 ctcacgacggcgccaagcagaccattgccaagctc 12028
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Plus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 7747 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 7806
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7807 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 7866
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 7867 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 7926
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 7927 cgcgagaaagaagaagcag 7945
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 12448 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 12507
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 12508 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 12567
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 12568 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 12626
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 12627 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 12686
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 12687 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 12743
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Plus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 11189 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 11248
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 11249 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 11308
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 11309 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 11368
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 11369 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 11428
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 11429 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 11484
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Plus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 10606 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 10665
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 10666 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 10725
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 10726 gcatcacaagcagtcagacgtaccggagatttatcgcctc 10765
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Plus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 12240 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 12299
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 12300 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 12359
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 10160 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 10219
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 10220 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 10279
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 10280 cttgcaaacct 10290
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 8735 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 8794
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 8795 gagaaaaagctgtacattgtgctcatcag 8823
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 8580 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 8639
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 8640 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 8699
Query: 539 ccatcgg 545
|| ||||
Sbjct: 8700 ccgtcgg 8706
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 10887 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 10943
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 7585 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 7636
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 8924 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 8973
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 9961 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 10004
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 11537 gtgcagaggatcatgaacaagatcaagcggtcgtc 11571
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 40179300 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 40179241
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 40179240 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 40179181
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 40179180 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 40179121
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 40179120 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 40179061
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 40179060 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 40179001
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 40179000 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 40178941
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 40178940 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 40178881
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 40178880 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 40178821
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 40178820 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 40178761
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 40178760 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 40178701
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 40178700 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 40178641
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 40178640 gttagctgccacggccgttttatgcctagaatggtggt 40178603
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Minus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 40176779 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 40176720
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 40176719 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 40176660
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 40176659 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 40176600
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 40176599 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 40176540
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 40176539 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 40176480
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 40176479 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 40176420
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 40176419 ctcacgacggcgccaagcagaccattgccaagctc 40176385
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Minus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 40180666 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 40180607
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40180606 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 40180547
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 40180546 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 40180487
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 40180486 cgcgagaaagaagaagcag 40180468
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 40175965 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 40175906
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 40175905 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 40175846
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 40175845 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 40175787
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 40175786 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 40175727
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 40175726 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 40175670
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 40177224 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 40177165
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 40177164 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 40177105
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 40177104 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 40177045
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 40177044 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 40176985
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 40176984 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 40176929
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 40177807 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 40177748
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 40177747 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 40177688
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 40177687 gcatcacaagcagtcagacgtaccggagatttatcgcctc 40177648
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 40176173 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 40176114
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 40176113 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 40176054
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 40178253 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 40178194
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 40178193 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 40178134
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 40178133 cttgcaaacct 40178123
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 40179833 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 40179774
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 40179773 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 40179714
Query: 539 ccatcgg 545
|| ||||
Sbjct: 40179713 ccgtcgg 40179707
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 40179678 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 40179619
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 40179618 gagaaaaagctgtacattgtgctcatcag 40179590
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 40177526 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 40177470
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 40180828 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 40180777
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 40179489 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 40179440
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 40178452 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 40178409
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 40176876 gtgcagaggatcatgaacaagatcaagcggtcgtc 40176842
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 14626683 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 14626624
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 14626623 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 14626564
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 14626563 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 14626504
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 14626503 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 14626444
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 14626443 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 14626384
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 14626383 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 14626324
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 14626323 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 14626264
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 14626263 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 14626204
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 14626203 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 14626144
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 14626143 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 14626084
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 14626083 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 14626024
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 14626023 gttagctgccacggccgttttatgcctagaatggtggt 14625986
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Minus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 14624162 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 14624103
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 14624102 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 14624043
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 14624042 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 14623983
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 14623982 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 14623923
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 14623922 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 14623863
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 14623862 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 14623803
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 14623802 ctcacgacggcgccaagcagaccattgccaagctc 14623768
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Minus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 14628049 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 14627990
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14627989 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 14627930
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 14627929 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 14627870
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 14627869 cgcgagaaagaagaagcag 14627851
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 14623348 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 14623289
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 14623288 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 14623229
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 14623228 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 14623170
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 14623169 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 14623110
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 14623109 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 14623053
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 14624607 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 14624548
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 14624547 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 14624488
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 14624487 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 14624428
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 14624427 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 14624368
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 14624367 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 14624312
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 14625190 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 14625131
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 14625130 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 14625071
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 14625070 gcatcacaagcagtcagacgtaccggagatttatcgcctc 14625031
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 14623556 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 14623497
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 14623496 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 14623437
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 14625636 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 14625577
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 14625576 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 14625517
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 14625516 cttgcaaacct 14625506
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 14627216 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 14627157
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 14627156 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 14627097
Query: 539 ccatcgg 545
|| ||||
Sbjct: 14627096 ccgtcgg 14627090
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 14627061 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 14627002
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 14627001 gagaaaaagctgtacattgtgctcatcag 14626973
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 14624909 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 14624853
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 14628211 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 14628160
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 14626872 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 14626823
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 14625835 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 14625792
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 14624259 gtgcagaggatcatgaacaagatcaagcggtcgtc 14624225
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0678F11
Length = 154292
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 41714 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 41655
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 41654 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 41595
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 41594 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 41535
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 41534 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 41475
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 41474 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 41415
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 41414 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 41355
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 41354 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 41295
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 41294 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 41235
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 41234 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 41175
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 41174 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 41115
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 41114 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 41055
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 41054 gttagctgccacggccgttttatgcctagaatggtggt 41017
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Minus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 39193 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 39134
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 39133 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 39074
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 39073 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 39014
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 39013 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 38954
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 38953 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 38894
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 38893 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 38834
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 38833 ctcacgacggcgccaagcagaccattgccaagctc 38799
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Minus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 43080 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 43021
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43020 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 42961
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 42960 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 42901
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 42900 cgcgagaaagaagaagcag 42882
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 38379 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 38320
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 38319 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 38260
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 38259 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 38201
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 38200 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 38141
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 38140 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 38084
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 39638 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 39579
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 39578 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 39519
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 39518 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 39459
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 39458 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 39399
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 39398 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 39343
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 40221 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 40162
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 40161 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 40102
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 40101 gcatcacaagcagtcagacgtaccggagatttatcgcctc 40062
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 38587 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 38528
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 38527 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 38468
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 40667 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 40608
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 40607 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 40548
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 40547 cttgcaaacct 40537
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 42247 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 42188
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 42187 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 42128
Query: 539 ccatcgg 545
|| ||||
Sbjct: 42127 ccgtcgg 42121
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 42092 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 42033
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 42032 gagaaaaagctgtacattgtgctcatcag 42004
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 39940 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 39884
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 43242 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 43191
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 41903 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 41854
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 40866 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 40823
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 39290 gtgcagaggatcatgaacaagatcaagcggtcgtc 39256
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 14386921 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 14386862
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 14386861 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 14386802
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 14386801 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 14386742
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 14386741 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 14386682
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 14386681 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 14386622
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 14386621 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 14386562
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 14386561 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 14386502
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 14386501 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 14386442
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 14386441 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 14386382
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 14386381 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 14386322
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 14386321 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 14386262
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 14386261 gttagctgccacggccgttttatgcctagaatggtggt 14386224
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Minus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 14384400 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 14384341
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 14384340 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 14384281
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 14384280 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 14384221
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 14384220 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 14384161
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 14384160 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtttgg 14384101
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 14384100 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 14384041
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 14384040 ctcacgacggcgccaagcagaccattgccaagctc 14384006
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Minus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 14388287 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 14388228
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14388227 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 14388168
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 14388167 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 14388108
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 14388107 cgcgagaaagaagaagcag 14388089
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 14383586 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 14383527
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 14383526 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 14383467
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 14383466 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 14383408
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 14383407 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 14383348
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 14383347 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 14383291
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 14384845 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 14384786
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 14384785 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 14384726
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 14384725 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 14384666
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 14384665 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 14384606
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 14384605 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 14384550
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 14385428 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 14385369
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 14385368 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 14385309
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 14385308 gcatcacaagcagtcagacgtaccggagatttatcgcctc 14385269
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 14383794 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 14383735
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 14383734 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 14383675
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 14385874 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 14385815
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 14385814 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 14385755
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 14385754 cttgcaaacct 14385744
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 14387454 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 14387395
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 14387394 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 14387335
Query: 539 ccatcgg 545
|| ||||
Sbjct: 14387334 ccgtcgg 14387328
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 14387299 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 14387240
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 14387239 gagaaaaagctgtacattgtgctcatcag 14387211
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 14385147 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 14385091
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 14388449 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 14388398
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 14387110 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 14387061
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 14386073 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 14386030
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 14384497 gtgcagaggatcatgaacaagatcaagcggtcgtc 14384463
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 39588642 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 39588583
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 39588582 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 39588523
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 39588522 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 39588463
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 39588462 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 39588403
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 39588402 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 39588343
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 39588342 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 39588283
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 39588282 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 39588223
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 39588222 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 39588163
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 39588162 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 39588103
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 39588102 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 39588043
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 39588042 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 39587983
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 39587982 gttagctgccacggccgttttatgcctagaatggtggt 39587945
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Minus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 39586121 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 39586062
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 39586061 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 39586002
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 39586001 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 39585942
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 39585941 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 39585882
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 39585881 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtttgg 39585822
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 39585821 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 39585762
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 39585761 ctcacgacggcgccaagcagaccattgccaagctc 39585727
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Minus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 39590008 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 39589949
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39589948 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 39589889
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 39589888 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 39589829
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 39589828 cgcgagaaagaagaagcag 39589810
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 39585307 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 39585248
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 39585247 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 39585188
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 39585187 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 39585129
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 39585128 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 39585069
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 39585068 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 39585012
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 39586566 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 39586507
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 39586506 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 39586447
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 39586446 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 39586387
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 39586386 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 39586327
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 39586326 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 39586271
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 39587149 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 39587090
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 39587089 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 39587030
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 39587029 gcatcacaagcagtcagacgtaccggagatttatcgcctc 39586990
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 39585515 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 39585456
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 39585455 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 39585396
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 39587595 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 39587536
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 39587535 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 39587476
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 39587475 cttgcaaacct 39587465
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 39589175 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 39589116
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 39589115 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 39589056
Query: 539 ccatcgg 545
|| ||||
Sbjct: 39589055 ccgtcgg 39589049
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 39589020 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 39588961
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 39588960 gagaaaaagctgtacattgtgctcatcag 39588932
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 39586868 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 39586812
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 39590170 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 39590119
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 39588831 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 39588782
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 39587794 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 39587751
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 39586218 gtgcagaggatcatgaacaagatcaagcggtcgtc 39586184
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 567 bits (286), Expect = e-158
Identities = 595/698 (85%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 40098630 caggtgaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacaga 40098571
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||| || || ||||||||||||||||||| ||| |||||||||||||| || |||||
Sbjct: 40098570 gtggatctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcct 40098511
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| || |||||| | ||||||||| ||| |||||||| | |||||||||| || ||
Sbjct: 40098510 actgaaatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcg 40098451
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||| ||||| || || |||| || |||||| || || || |||||
Sbjct: 40098450 tacattgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtgg 40098391
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 40098390 ccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggct 40098331
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||| || |||||| | ||||||| || || |||| || || || ||||| ||||||
Sbjct: 40098330 ctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactat 40098271
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 40098270 gccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctc 40098211
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
|| || || ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 40098210 accggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcg 40098151
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 40098150 aaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggcc 40098091
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
||||||| | |||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct: 40098090 ttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaatgggga 40098031
Query: 1318 ttgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggg 1377
|||| ||||| |||||||||||||| |||||||| ||||||| || |||||||||||
Sbjct: 40098030 ctgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtgcgaggcgcgga 40097971
Query: 1378 gttagctgccatggtcgttacatgcctaggatggtggt 1415
||||||||||| || |||| |||||||| ||||||||
Sbjct: 40097970 gttagctgccacggccgttttatgcctagaatggtggt 40097933
Score = 307 bits (155), Expect = 2e-080
Identities = 335/395 (84%)
Strand = Plus / Minus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 40096109 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 40096050
Query: 2489 gctaccaggacgatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttca 2548
||||| ||||||||| | || ||||||| ||||||||||||||||||||| || ||||
Sbjct: 40096049 gctacggcgacgatggcagcgccagcaagaggatgctgcaggtgatccaggaggtgttca 40095990
Query: 2549 gagcagtccgatcggactcccagatgttcaagatctcagggttcacgctgtcgactgcca 2608
| || ||||| |||||||||||||||| || |||||| |||||| |||||||||| || |
Sbjct: 40095989 gggctgtccggtcggactcccagatgtccaggatctccgggttcgcgctgtcgacggcga 40095930
Query: 2609 tgccgttgtccgagacactccagcttctgcagctcggcaagatcccagcgaccgacttcg 2668
||||| || | ||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 40095929 tgccgctgccggagacgctcaagcttctgcagctgggcaagatcccaccgaccgacttcg 40095870
Query: 2669 acgccctcatctgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatgg 2728
|||| |||||||| ||||||||||||||||||||||| || |||||||| | || |||
Sbjct: 40095869 acgcgctcatctgcggcagcggcagcgaggtgtactaccccagcacggcgcagtgtgtgg 40095810
Query: 2729 acgctgaaggaaagctgcgcccagatcaggactatctgatgcacatcagccaccgctggt 2788
|||| | || | ||||||||| || |||||||| ||| ||||||||| |||||| ||||
Sbjct: 40095809 acgccggggggaggctgcgccccgaccaggactacctgctgcacatcaaccaccggtggt 40095750
Query: 2789 cccatgacggcgcgaggcagaccatagcgaagctc 2823
| || |||||||| | ||||||||| || ||||||
Sbjct: 40095749 ctcacgacggcgccaagcagaccattgccaagctc 40095715
Score = 283 bits (143), Expect = 3e-073
Identities = 185/199 (92%)
Strand = Plus / Minus
Query: 225 ggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgagga 284
|||||||||||| || ||| |||||||||||||||| || ||||||||||||| |||||
Sbjct: 40099996 ggcggcgagcccgcgtggcccgcacatgaacttcaatccgacgcactacttcgtggagga 40099937
Query: 285 ggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40099936 ggtggtgaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgccac 40099877
Query: 345 ccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcacct 404
|||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct: 40099876 ccgcaacgcccgcgagcggagcacccgcctcgagaacatgtgctggcgcatctggcacct 40099817
Query: 405 cgcgcgcaagaagaagcag 423
|||| | ||||||||||||
Sbjct: 40099816 cgcgagaaagaagaagcag 40099798
Score = 200 bits (101), Expect = 4e-048
Identities = 250/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 40095295 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 40095236
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
| || ||||||||||||| ||||||||||| || ||| |||||||||| |||||| |||
Sbjct: 40095235 agcacggcgacaccgatcacgaggagatgctgtcagggttacacaagacggtgatcatcc 40095176
Query: 3164 gtggcgtcaccgagaagggttcggaagca-ctggtgaggagcccaggaagctacaagagg 3222
| ||||||||||||||||| |||| |||| |||||||||||| |||| || ||| |||||
Sbjct: 40095175 gcggcgtcaccgagaagggctcgg-agcagctggtgaggagctcagggagttaccagagg 40095117
Query: 3223 gacgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggcc 3282
|| ||||| ||||| || |||| ||||||| ||| | ||| | ||||| |||||||||
Sbjct: 40095116 gaagatgttgtcccatccgagagccccttgattgctttcacaaagggtgatctgaaggcc 40095057
Query: 3283 gacgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatt 3339
|| ||||||||||| ||||| ||| | ||| ||||| || |||| ||||||| ||||
Sbjct: 40095056 gatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagtggcatgtaaatt 40095000
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 40096554 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 40096495
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 40096494 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 40096435
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 40096434 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 40096375
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 40096374 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 40096315
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 40096314 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 40096259
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 40097137 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 40097078
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 40097077 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 40097018
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 40097017 gcatcacaagcagtcagacgtaccggagatttatcgcctc 40096978
Score = 119 bits (60), Expect = 1e-023
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 2930 tcgatgagatgagggagcggctgaggatgcgtggtctccgctgccacatcatgtactgca 2989
||||||||||| ||||| || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 40095503 tcgatgagatgcgggagagggtgaggatgcgtggcctccgatgccatctcatgtactgca 40095444
Query: 2990 ggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggt 3049
|||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 40095443 ggaatgcaacaaggcttcaagttgttcctcttctagcatcgaggtcacaagcactcaggt 40095384
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 40097583 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 40097524
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 40097523 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 40097464
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 40097463 cttgcaaacct 40097453
Score = 85.7 bits (43), Expect = 2e-013
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
||||||||||||| ||||| |||| ||| || || ||| | |||||||| ||||||||||
Sbjct: 40099163 agcagctggagcttgagggaatcctgaggatttctgcacggaggaaggagcaggagcagg 40099104
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| || ||| | |||||||||| || |||||||||| ||||||||||||| ||||
Sbjct: 40099103 tgcgccgcgagacttcggaggaccttgcagaggatctgtttgaaggcgagaaggcggaca 40099044
Query: 539 ccatcgg 545
|| ||||
Sbjct: 40099043 ccgtcgg 40099037
Score = 85.7 bits (43), Expect = 2e-013
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 571 aagaagaagttccagaggaacttctctgaccttaccgtc---tggtctgacgacaataag 627
|||||||||||||||||||||||||| || || |||||| ||||| ||||| || |||
Sbjct: 40099008 aagaagaagttccagaggaacttctcagagctcaccgtcagctggtccgacgagaacaag 40098949
Query: 628 gagaagaagctttacattgtgctcatcag 656
||||| ||||| |||||||||||||||||
Sbjct: 40098948 gagaaaaagctgtacattgtgctcatcag 40098920
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 40096856 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 40096800
Score = 71.9 bits (36), Expect = 2e-009
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 111 gatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagc 162
|||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 40100158 gatggcggggaacgagtggatcaatggctacctggaggcgatactggacagc 40100107
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatac 710
|||||||| |||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 40098819 catggtctagttcgtggcgataacatggaacttggtcgggattcagatac 40098770
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 40097782 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 40097739
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 40096206 gtgcagaggatcatgaacaagatcaagcggtcgtc 40096172
>dbj|AG205918.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7015_0_103_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NE7015, genomic survey sequence
Length = 627
Score = 454 bits (229), Expect = e-124
Identities = 488/573 (85%), Gaps = 1/573 (0%)
Strand = Plus / Plus
Query: 817 gactggagctacggtgagccaaccgagatgttatgcgccggttccaatgatggagagggg 876
||||||||||| || ||||| || || |||||| | ||||||||| ||| ||||||||
Sbjct: 1 gactggagctatggggagcctactgaaatgttaacctccggttccactgacggagaggga 60
Query: 877 atgggtgagagtggcggagcctacattgtgcgcataccgtgtgggccgcgggataaatac 936
| |||||||||| || || |||||||||||||| ||||| || || |||| || |||
Sbjct: 61 agcggtgagagtgctggtgcgtacattgtgcgcattccgtgcggtccaagggacaagtac 120
Query: 937 ctcaagaaggaagcgttgtggccttacctccaagagtttgtcgatggagcccttgcgcat 996
||| || || || |||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 121 ctccgtaaagaggccctgtggccttacctccaagagtttgtcgacggagctctcgcgcat 180
Query: 997 atcctgaacatgtccaaggctctgggagagcaggttggaaatgggaggccagtactgcct 1056
|||||||||||||||||||||||||| || |||||| | ||||||| || || ||||
Sbjct: 181 atcctgaacatgtccaaggctctgggggaacaggttagcaatgggaagctggtcttgcca 240
Query: 1057 tacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctttctggtgcg 1116
|| || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 241 tatgtaatccatggccactatgccgatgctggagatgtcgctgctcttctttctggtgcg 300
Query: 1117 ctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaactg 1176
||||||||||| ||||| ||||| || || ||||||||||||||||||||||| || |
Sbjct: 301 ctgaatgtgccgatggttctcaccggtcattcacttgggaggaacaagctggagcagatc 360
Query: 1177 ctgaagcaagggcgcatgtccaaggaggagatcgattcgacatacaagatcatgaggcgt 1236
||||||||||||||||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 361 atgaagcaagggcgcatgtcgaaggaggagattgactcaacttacaagatcatgaggcgc 420
Query: 1237 atcgagggtgaggagctggccctggatgcgtcagagcttgtaatcacgagcacaaggcag 1296
|| |||||||||||||||||| ||||||| || |||||||| || ||||| ||||||||
Sbjct: 421 attgagggtgaggagctggccttggatgcatcggagcttgtcataacgagtacaaggcat 480
Query: 1297 gagattgatgagcagtggggattgtacgatggatttgatgtcaagcttgagaaagtgctg 1356
|||||||||||||| |||||| |||| ||||| |||||||||||||| |||||||| ||
Sbjct: 481 gagattgatgagcaatggggactgtatgatggctttgatgtcaagctagagaaagttttg 540
Query: 1357 agggcacgggcgaggcg-cggggttagctgcca 1388
||||| || |||||||| ||| |||||||||||
Sbjct: 541 agggctcgtgcgaggcgccggagttagctgcca 573
>dbj|AG213996.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12049T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9050, genomic survey sequence
Length = 513
Score = 426 bits (215), Expect = e-116
Identities = 393/453 (86%)
Strand = Plus / Plus
Query: 953 tgtggccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtcca 1012
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 25 tgtggccttacctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtcca 84
Query: 1013 aggctctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggc 1072
|||||||||| || |||||| | ||||||| || || |||| || || || ||||| |
Sbjct: 85 aggctctgggggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggcc 144
Query: 1073 actatgccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatgg 1132
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 145 actatgccgatgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatgg 204
Query: 1133 tgctcactggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgca 1192
| ||||| || || ||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 205 ttctcaccggtcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgca 264
Query: 1193 tgtccaaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagc 1252
|||| ||||||||||| || || || ||||||||||||||||| || |||||||||||||
Sbjct: 265 tgtcgaaggaggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagc 324
Query: 1253 tggccctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagt 1312
||||| ||||||| | |||||||| || ||||| ||||||||||||||||||||||| |
Sbjct: 325 tggccttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatgagcaat 384
Query: 1313 ggggattgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggc 1372
||||| |||| ||||| |||||||||||||| || ||||| ||||||| || |||| ||
Sbjct: 385 ggggactgtatgatggctttgatgtcaagctaganaaagttttgagggctcgtgcgaagc 444
Query: 1373 gcggggttagctgccatggtcgttacatgccta 1405
|||| |||||||||| || |||| |||||||
Sbjct: 445 gcgganttagctgccacggccgttttatgccta 477
>dbj|AG024164.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND3060_0_102_1A, 3'
flanking sequence of Tos17 insertion in rice strain
ND3060, genomic survey sequence
Length = 729
Score = 420 bits (212), Expect = e-114
Identities = 460/543 (84%)
Strand = Plus / Plus
Query: 723 gaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagggtgga 782
||||||||| || ||||| |||||||| | ||||||||||||| |||||||| |||||
Sbjct: 1 gaaatatgttgttgaactcgcaagagcacttgcaatgatgcctggcgtgtacagagtgga 60
Query: 783 cctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagccaaccga 842
|| || ||||||||||||||||||| ||| |||||||||||||| || ||||| || ||
Sbjct: 61 tctgtttactcgtcaagtgtcatctcctgaagtggactggagctatggggagcctactga 120
Query: 843 gatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcctacat 902
|||||| | ||||||||| ||| |||||||| | |||||||||| || || |||||
Sbjct: 121 aatgttaacctccggttccactgacggagagggaagcggtgagagtgctggtgcgtacat 180
Query: 903 tgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtggcctta 962
||||||||| ||||| || || |||| || |||||| || || || ||||||||||
Sbjct: 181 tgtgcgcattccgtgcggtccaagggacaagtacctccgtaaagaggccctgtggcctta 240
Query: 963 cctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggctctggg 1022
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 241 cctccaagagtttgtcgacggagctctcgcgcatatcctgaacatgtccaaggctctggg 300
Query: 1023 agagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactatgccga 1082
|| |||||| | ||||||| || || |||| || || || ||||| |||||||||||
Sbjct: 301 ggaacaggttagcaatgggaagctggtcttgccatatgtaatccatggccactatgccga 360
Query: 1083 tgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctcactgg 1142
|||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 361 tgctggagatgtcgctgctcttctttctggtgcgctgaatgtgccgatggttctcaccgg 420
Query: 1143 ccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtccaagga 1202
|| ||||||||||||||||||||||| || | ||||||||||||||||||| || ||
Sbjct: 421 tcattcacttgggaggaacaagctggagcagatcatgaagcaagggcgcatgtcgaanga 480
Query: 1203 ggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggccctgga 1262
|||||| || || || ||||||||||||||||| || |||||||||||||||||| ||||
Sbjct: 481 ggagattgactcaacttacaagatcatgaggcgcattgagggtgaggagctggccttgga 540
Query: 1263 tgc 1265
|||
Sbjct: 541 tgc 543
>dbj|AG023731.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND2003_0_102_1A, 3'
flanking sequence of Tos17 insertion in rice strain
ND2003, genomic survey sequence
Length = 481
Score = 333 bits (168), Expect = 4e-088
Identities = 380/450 (84%), Gaps = 1/450 (0%)
Strand = Plus / Plus
Query: 817 gactggagctacggtgagccaaccgagatgttatgcgccggttccaatgatggagagggg 876
||||||||||| || ||||| || || |||||| | ||||||||| ||| ||||||||
Sbjct: 1 gactggagctatggggagcctactgaaatgttaacctccggttccactgacggagaggga 60
Query: 877 atgggtgagagtggcggagcctacattgtgcgcataccgtgtgggccgcgggataaatac 936
| |||||||||| || || |||||||||||||| ||||| || || |||| || |||
Sbjct: 61 ancggtgagagtgctggtgcgtacattgtgcgcattccgtgcggtccaagggacaagtac 120
Query: 937 ctcaagaaggaagcgttgtggccttacctccaagagtttgtcgatggagcccttgcgcat 996
||| || || || |||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 121 ctccgtaaagaggccctgtggccttacctccaagagtttgtcgacggagctctcgcgcat 180
Query: 997 atcctgaacatgtccaaggctctgggagagcaggttggaaatgggaggccagtact-gcc 1055
|||||||||||||||||||||||||| || |||||| | ||||||| || || | |||
Sbjct: 181 atcctgaacatgtccaaggctctgggggaacaggttagcaatgggaagctggtcttngcc 240
Query: 1056 ttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctttctggtgc 1115
|| || || ||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 241 atatgtaatccatggccactatgccgatgctggagatgtcgctgctcttctttctggtgc 300
Query: 1116 gctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaact 1175
|||||||||||| ||||| ||||| || || ||||||||||||||||||||||| || |
Sbjct: 301 gctgaatgtgccgatggttctcaccggtcattcacttgggaggaacaagctggagcagat 360
Query: 1176 gctgaagcaagggcgcatgtccaaggaggagatcgattcgacatacaagatcatgaggcg 1235
||||||||||||||||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 361 catgaagcaagggcgcatgtcgaaggaggagattgactcaacttacaagatcatgaggcg 420
Query: 1236 tatcgagggtgaggagctggccctggatgc 1265
|| |||||| ||||||||||| |||||||
Sbjct: 421 cattgagggtnaggagctggccttggatgc 450
>gb|AU094286.1|AU094286 AU094286 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3926, mRNA sequence
Length = 614
Score = 234 bits (118), Expect = 3e-058
Identities = 279/330 (84%), Gaps = 2/330 (0%)
Strand = Plus / Plus
Query: 3011 ttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgctggggcg 3070
|||| ||||| |||||||| |||||||| |||||||||||||||| ||| |||||||||
Sbjct: 1 ttgttcctcttctagcatcgaggtcacaagcactcaggtatcttttcgtacgctggggcc 60
Query: 3071 tatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatctagaggaga 3130
| |||||||| ||||||||||||||| |||||| || ||||||||||||| |||||||
Sbjct: 61 tgtctgtgggaaacatgtatctgatcgtcggggagcacggcgacaccgatcacgaggaga 120
Query: 3131 tgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaagggttcggaag 3190
|||| || ||| |||||||||| |||||| |||| ||||||||||||||||| |||| ||
Sbjct: 121 tgctgtcagggttacacaagacggtgatcatccgcggcgtcaccgagaagggctcgg-ag 179
Query: 3191 ca-ctggtgaggagcccaggaagctacaagagggacgatgtcgtcccgtctgagaccccc 3249
|| |||||||||||| |||| || ||| ||||||| ||||| ||||| || |||| ||||
Sbjct: 180 cagctggtgaggagctcagggagttaccagagggaagatgttgtcccatccgagagcccc 239
Query: 3250 ttggctgcgtacacgactggtgagctgaaggccgacgagatcatgcgggctctgaagcaa 3309
||| ||| | ||| | ||||| ||||||||||| ||||||||||| ||||| ||| |
Sbjct: 240 ttgattgctttcacaaagggtgatctgaaggccgatgagatcatgcgtgctctcaaggag 299
Query: 3310 gtctccaagacttccagcggcatgtgaatt 3339
||| ||||| || |||| ||||||| ||||
Sbjct: 300 gtcaccaaggctgccagtggcatgtaaatt 329
>gb|CG408661.1|CG408661 Ds353 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 271
Score = 228 bits (115), Expect = 2e-056
Identities = 230/267 (86%), Gaps = 1/267 (0%)
Strand = Plus / Plus
Query: 1096 gctgctctcctttctggtgcgctgaatgtgccaatggtgctcactggccactcacttggg 1155
|||||||| |||||||||||||||| | |||| ||||| ||||| | || |||||||||
Sbjct: 3 gctgctcttctttctggtgcgctgattttgccgatggttctcacccgtcattcacttggg 62
Query: 1156 aggaacaagctggaacaactgctgaagcaagggcgcatgtccaaggaggagatcgattcg 1215
|||||||||||||| || | ||||||||||||||||||| ||||||||||| || ||
Sbjct: 63 aggaacaagctggagcagatcatgaagcaagggcgcatgtcgaaggaggagattgactca 122
Query: 1216 acatacaagatcatgaggcgtatcgagggtgaggagctggccctggatgcgtcagagctt 1275
|| ||||||||||||||||| || |||||||||||||||||| ||||||| | ||||||
Sbjct: 123 acttacaagatcatgaggcgcattgagggtgaggagctggccttggatgcagcggagctt 182
Query: 1276 gtaatcac-gagcacaaggcaggagattgatgagcagtggggattgtacgatggatttga 1334
|| || || || ||||||||||||||||||||||| |||||| |||| ||||| |||||
Sbjct: 183 gtcataacttagtacaaggcaggagattgatgagcaatggggactgtatgatggctttga 242
Query: 1335 tgtcaagcttgagaaagtgctgagggc 1361
||||||||| |||||||| |||||||
Sbjct: 243 tgtcaagctagagaaagttttgagggc 269
>dbj|AG024022.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND3010_0_706_1A, 3'
flanking sequence of Tos17 insertion in rice strain
ND3010, genomic survey sequence
Length = 372
Score = 224 bits (113), Expect = 3e-055
Identities = 200/229 (87%)
Strand = Plus / Minus
Query: 1187 ggcgcatgtccaaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtg 1246
|||||||||| ||||||||||| || || || ||||||||||||||||| || |||||||
Sbjct: 357 ggcgcatgtcgaaggaggagattgactcaacttacaagatcatgaggcgcattgagggtg 298
Query: 1247 aggagctggccctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatg 1306
||||||||||| ||||||| | |||||||| || ||||| |||||||||||||||||||
Sbjct: 297 aggagctggccttggatgcagcggagcttgtcataacgagtacaaggcaggagattgatg 238
Query: 1307 agcagtggggattgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacggg 1366
|||| |||||| |||| ||||| |||||||||||||| |||||||| ||||||| || |
Sbjct: 237 agcaatggggactgtatgatggctttgatgtcaagctagagaaagttttgagggctcgtg 178
Query: 1367 cgaggcgcggggttagctgccatggtcgttacatgcctaggatggtggt 1415
|||||||||| ||||||||||| || |||| |||||||| ||||||||
Sbjct: 177 cgaggcgcggagttagctgccacggccgttttatgcctagaatggtggt 129
>gb|C73370.1|C73370 C73370 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3926_1A, mRNA sequence
Length = 459
Score = 222 bits (112), Expect = 1e-054
Identities = 277/331 (83%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 3010 gttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgctggggc 3069
||||| ||||| |||||||| |||||||| |||||||||||||||| ||| |||||||||
Sbjct: 1 gttgtncctcttctagcatcgaggtcacaagcactcaggtatctttncgtacgctggggc 60
Query: 3070 gtatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatctagaggag 3129
| | |||||| ||||||||||| ||| ||||| || ||||||||||||| ||||||
Sbjct: 61 ctgtntgtgggaaacatgtatctnatcgtnggggagcacggcgacaccgatcacgaggag 120
Query: 3130 atgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaagggttcggaa 3189
||||| || ||| |||||||||| |||||| |||| ||||||||||||||||| |||| |
Sbjct: 121 atgctgtcagggttacacaagacggtgatcatccgcggcgtcaccgagaagggctcgg-a 179
Query: 3190 gca-ctggtgaggagcccaggaagctacaagagggacgatgtcgtcccgtctgagacccc 3248
||| |||||||||||| |||| || ||| ||||||| ||||| ||||| || |||| |||
Sbjct: 180 gcagctggtgaggagctcagggagttaccagagggaagatgttgtcccatccgagagccc 239
Query: 3249 cttggctgcgtacacgactggtgagctgaaggccgacgagatcatgcgggctctgaagca 3308
|||| ||| | ||| | ||||| ||||||||||| ||||||||||| ||||| ||| |
Sbjct: 240 cttgattgctttcacaaagggtgatctgaaggccgatgagatcatgcgtgctctcaagga 299
Query: 3309 agtctccaagacttccagcggcatgtgaatt 3339
||| ||||| || |||| ||||||| ||||
Sbjct: 300 ggtcaccaaggctgccagtggcatgtaaatt 330
>dbj|AG213062.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF9857_0_702_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NF9857, genomic survey sequence
Length = 607
Score = 186 bits (94), Expect = 6e-044
Identities = 246/296 (83%), Gaps = 3/296 (1%)
Strand = Plus / Plus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| |||||||| || ||||| || |||||| ||||||| || || || |||||||||
Sbjct: 88 aacaatggactgctggtagacccgcatgaccagcacgccattgccgacgcgctgctgaag 147
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|| ||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 148 ctggtggcggacaagaacctgtggcaggagtgccggaagaacggcctgcgcaacatccag 207
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
|||||||| ||||||||||| ||||| || |||||||||||| | ||||| |||||| |
Sbjct: 208 ctctactcgtggccggagcattgccggacatacctcaccaggatagccggatgccggatc 267
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||| | ||||||| |||||| || || || || | ||||| |||||||| |
Sbjct: 268 aggaacccgcgctggctgatggacacgccggcggacgcggccgccgaggaggaggaagcc 327
Query: 2218 ctggaggattc---catggacgctcaggacctgtcactccgtctgtccatcgacgg 2270
|||||||| || |||||||| |||||||| || || || ||||||||||||||
Sbjct: 328 ctggaggactcgctcatggacgtccaggacctctcgctgcgcctgtccatcgacgg 383
Score = 58.0 bits (29), Expect = 3e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 2429 ccatgaacaaatacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggact 2488
|||||||||| ||||| ||||| ||||| ||||| | ||||||||||||| |||||||
Sbjct: 533 ccatgaacaagtacccgctcctccgccgacgccgcaggctgttcgtcatagccgtggact 592
Query: 2489 gctac 2493
|||||
Sbjct: 593 gctac 597
Score = 46.1 bits (23), Expect = 0.13
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2326 gtgcagaagatcatgaacaacatcaagcagtcgtc 2360
||||||| |||||||||||| ||||||| ||||||
Sbjct: 436 gtgcagaggatcatgaacaagatcaagcggtcgtc 470
>dbj|AG209514.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7022_0_101_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NE7022, genomic survey sequence
Length = 724
Score = 184 bits (93), Expect = 2e-043
Identities = 165/189 (87%)
Strand = Plus / Plus
Query: 1227 catgaggcgtatcgagggtgaggagctggccctggatgcgtcagagcttgtaatcacgag 1286
||||||||| || |||||||||||||||||| ||||||| | |||||||| || |||||
Sbjct: 1 catgaggcgcattgagggtgaggagctggccttggatgcagcggagcttgtcataacgag 60
Query: 1287 cacaaggcaggagattgatgagcagtggggattgtacgatggatttgatgtcaagcttga 1346
||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||| ||
Sbjct: 61 tacaaggcaggagattgatgagcaatggggactgtatgatggctttgatgtcaagctaga 120
Query: 1347 gaaagtgctgagggcacgggcgaggcgcggggttagctgccatggtcgttacatgcctag 1406
|||||| ||||||| || ||||||||||| ||||||||||| || |||| ||||||||
Sbjct: 121 gaaagttttgagggctcgtgcgaggcgcggagttagctgccacggccgttttatgcctag 180
Query: 1407 gatggtggt 1415
||||||||
Sbjct: 181 aatggtggt 189
Score = 117 bits (59), Expect = 4e-023
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 1546 gtgatgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagac 1605
||||||||||| ||||||| || |||||||| ||||| ||||| | |||||||| ||
Sbjct: 539 gtgatgcggtttttgaccaatccccacaagccaatgattctggctctgtcaagacctgat 598
Query: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaa 1665
|| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 599 ccaaagaagaacatcaccacccttgtcaaagcatttggagaatgtcgcccactgagggaa 658
Query: 1666 cttgcaaacct 1676
|||||||||||
Sbjct: 659 cttgcaaacct 669
Score = 48.1 bits (24), Expect = 0.033
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1417 attcctccgggaatggatttcagcaatgttgtagttcatgaaga 1460
|||||||| || ||||||||||||| |||||| |||| ||||||
Sbjct: 340 attcctcctgggatggatttcagcagtgttgtggttcctgaaga 383
>dbj|AG213044.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF9854_0_404_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NF9854, genomic survey sequence
Length = 542
Score = 167 bits (84), Expect = 5e-038
Identities = 141/160 (88%)
Strand = Plus / Minus
Query: 1680 tctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtcct 1739
|||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||||
Sbjct: 356 tctgatcatggggaacagggatgacatcgatgagatgtccgctggcaatgcaagcgtcct 297
Query: 1740 caccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccctaa 1799
|||||| || ||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 296 caccactgtcctgaagctgatcgacaagtatgatctgtacggaagtgttgcattccccaa 237
Query: 1800 gcatcacaatcaggctgacgtcccggagatctatcgcctc 1839
||||||||| ||| | ||||| |||||||| |||||||||
Sbjct: 236 gcatcacaagcagtcagacgtaccggagatttatcgcctc 197
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 75 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 19
>dbj|AG208863.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE4049_0_706_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NE4049, genomic survey sequence
Length = 213
Score = 99.6 bits (50), Expect = 1e-017
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
|||||||||||| ||| ||||||||| | |||||||| ||||||||||||||| |||||
Sbjct: 103 tcaggtatcttttcgtacgctggggcctgtctgtgggaaacatgtatctgatcgtcgggg 162
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagac 3152
| || ||| ||||||||| ||||||||||| || ||| ||||||||||
Sbjct: 163 agcacggcnacaccgatcacgaggagatgctgtcagggttacacaagac 211
>dbj|AG210281.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF0047_0_702_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NF0047, genomic survey sequence
Length = 504
Score = 81.8 bits (41), Expect = 2e-012
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1853 agggcgtcttcatcaaccctgctctcgttgagccgtttggtctcaccctgatcgagg 1909
|||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 335 agggcgtcttcatcaatcctgctcttgttgagcctttcggtctcaccctgatcgagg 279
>dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L08, full
insert sequence
Length = 3326
Score = 77.8 bits (39), Expect = 4e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct: 618 catggtctggtccgtggtgagaacatggagctaggacgagattcagatactggtggccag 677
Query: 721 gtgaaatatgtggtcgaacttgc 743
|| ||||||||||| ||||||||
Sbjct: 678 gtcaaatatgtggttgaacttgc 700
>dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B04, full
insert sequence
Length = 3259
Score = 77.8 bits (39), Expect = 4e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct: 591 catggtctggtccgtggtgagaacatggagctaggacgagattcagatactggtggccag 650
Query: 721 gtgaaatatgtggtcgaacttgc 743
|| ||||||||||| ||||||||
Sbjct: 651 gtcaaatatgtggttgaacttgc 673
>dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H16, full
insert sequence
Length = 3489
Score = 77.8 bits (39), Expect = 4e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct: 652 catggtctggtccgtggtgagaacatggagctaggacgagattcagatactggtggccag 711
Query: 721 gtgaaatatgtggtcgaacttgc 743
|| ||||||||||| ||||||||
Sbjct: 712 gtcaaatatgtggttgaacttgc 734
>ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3259
Score = 77.8 bits (39), Expect = 4e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct: 591 catggtctggtccgtggtgagaacatggagctaggacgagattcagatactggtggccag 650
Query: 721 gtgaaatatgtggtcgaacttgc 743
|| ||||||||||| ||||||||
Sbjct: 651 gtcaaatatgtggttgaacttgc 673
>ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13
mRNA
Length = 3490
Score = 77.8 bits (39), Expect = 4e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct: 653 catggtctggtccgtggtgagaacatggagctaggacgagattcagatactggtggccag 712
Query: 721 gtgaaatatgtggtcgaacttgc 743
|| ||||||||||| ||||||||
Sbjct: 713 gtcaaatatgtggttgaacttgc 735
>ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13
mRNA
Length = 3327
Score = 77.8 bits (39), Expect = 4e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 661 catggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccag 720
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct: 619 catggtctggtccgtggtgagaacatggagctaggacgagattcagatactggtggccag 678
Query: 721 gtgaaatatgtggtcgaacttgc 743
|| ||||||||||| ||||||||
Sbjct: 679 gtcaaatatgtggttgaacttgc 701
>gb|AACV01022679.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022679, whole
genome shotgun sequence
Length = 17522
Score = 67.9 bits (34), Expect = 4e-008
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 17276 gggaacgagtggatcaacgggtacctggaggcgatcct 17313
>gb|CH401260.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000097
genomic scaffold, whole genome shotgun sequence
Length = 385661
Score = 67.9 bits (34), Expect = 4e-008
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 368386 gggaacgagtggatcaacgggtacctggaggcgatcct 368349
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 67.9 bits (34), Expect = 4e-008
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 6752940 gggaacgagtggatcaacgggtacctggaggcgatcct 6752903
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 67.9 bits (34), Expect = 4e-008
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 7185182 gggaacgagtggatcaacgggtacctggaggcgatcct 7185145
Score = 58.0 bits (29), Expect = 3e-005
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 1114 gcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaa 1173
|||||||| ||||| |||||| | || || ||||| || ||| ||||||||||||| ||
Sbjct: 7181491 gcgctgaacgtgccgatggtgatgacggggcactcgctggggcggaacaagctggagcag 7181432
Query: 1174 ctgctgaagcaagggcgcatg 1194
|||||||||| |||||||||
Sbjct: 7181431 ctgctgaagctggggcgcatg 7181411
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0026P08 map near C827S, complete sequence
Length = 148676
Score = 67.9 bits (34), Expect = 4e-008
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 98325 gggaacgagtggatcaacgggtacctggaggcgatcct 98288
Score = 58.0 bits (29), Expect = 3e-005
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 1114 gcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaa 1173
|||||||| ||||| |||||| | || || ||||| || ||| ||||||||||||| ||
Sbjct: 94634 gcgctgaacgtgccgatggtgatgacggggcactcgctggggcggaacaagctggagcag 94575
Query: 1174 ctgctgaagcaagggcgcatg 1194
|||||||||| |||||||||
Sbjct: 94574 ctgctgaagctggggcgcatg 94554
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 67.9 bits (34), Expect = 4e-008
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 7251076 gggaacgagtggatcaacgggtacctggaggcgatcct 7251039
Score = 58.0 bits (29), Expect = 3e-005
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 1114 gcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaa 1173
|||||||| ||||| |||||| | || || ||||| || ||| ||||||||||||| ||
Sbjct: 7247385 gcgctgaacgtgccgatggtgatgacggggcactcgctggggcggaacaagctggagcag 7247326
Query: 1174 ctgctgaagcaagggcgcatg 1194
|||||||||| |||||||||
Sbjct: 7247325 ctgctgaagctggggcgcatg 7247305
>gb|CB678310.1|CB678310 OSJNEe16B12.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16B12 5', mRNA sequence
Length = 690
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 162 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 211
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full
insert sequence
Length = 3858
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 194 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 243
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1115_A07
Length = 165126
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 8917 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 8966
>gb|AACV01017982.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017982, whole
genome shotgun sequence
Length = 2943
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 1628 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 1677
>dbj|BA000044.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
centromeric region
Length = 1992366
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 456383 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 456432
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 12165204 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 12165253
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 4153804 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 4153853
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 11755810 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 11755859
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 12404888 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 12404937
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
complete sequence
Length = 164501
Score = 60.0 bits (30), Expect = 9e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 110 cgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 74203 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 74252
>ref|NT_107144.1| Oryza sativa (japonica cultivar-group)
Length = 965832
Score = 58.0 bits (29), Expect = 3e-005
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 1114 gcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaa 1173
|||||||| ||||| |||||| | || || ||||| || ||| ||||||||||||| ||
Sbjct: 964769 gcgctgaacgtgccgatggtgatgacggggcactcgctggggcggaacaagctggagcag 964710
Query: 1174 ctgctgaagcaagggcgcatg 1194
|||||||||| |||||||||
Sbjct: 964709 ctgctgaagctggggcgcatg 964689
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0097K08 map C827S, complete sequence
Length = 137870
Score = 58.0 bits (29), Expect = 3e-005
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 1114 gcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaa 1173
|||||||| ||||| |||||| | || || ||||| || ||| ||||||||||||| ||
Sbjct: 1064 gcgctgaacgtgccgatggtgatgacggggcactcgctggggcggaacaagctggagcag 1123
Query: 1174 ctgctgaagcaagggcgcatg 1194
|||||||||| |||||||||
Sbjct: 1124 ctgctgaagctggggcgcatg 1144
>dbj|AG021278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06818T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2767, genomic survey sequence
Length = 649
Score = 56.0 bits (28), Expect = 1e-004
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 3268 ggtgagctgaaggccgacgagatcatgcgggctctgaagcaagtctccaagacttccagc 3327
||||| ||||||||||| ||||||||||| ||||| ||| | ||| ||||| || ||||
Sbjct: 40 ggtgatctgaaggccgatgagatcatgcgtgctctcaaggaggtcaccaaggctgccagt 99
Query: 3328 ggcatgtgaatt 3339
||||||| ||||
Sbjct: 100 ggcatgtaaatt 111
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3201
Score = 56.0 bits (28), Expect = 1e-004
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 112 atggccgggaacgagtggatcaatgggtacctggaggcgatcctcgac 159
||||| |||||||| |||||||| | |||||||||||||||||||||
Sbjct: 1 atggcggggaacgactggatcaacagctacctggaggcgatcctcgac 48
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,248,596
Number of Sequences: 438736
Number of extensions: 7248596
Number of successful extensions: 122320
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116846
Number of HSP's gapped (non-prelim): 5394
length of query: 3527
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 3505
effective length of database: 2,790,767,724
effective search space: 9781640872620
effective search space used: 9781640872620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)